|
|
Homology
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: D8LDL2_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDL2_ECTSI) HSP 1 Score: 245 bits (625), Expect = 1.200e-71 Identity = 119/148 (80.41%), Postives = 128/148 (86.49%), Query Frame = 2
Query: 278 AAVSRRHGARHISSTARAMHGDHEEGFEHSQIVDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
AA+ R ISSTARA HGDHEEGFEH+Q V +TWEN G + TT AKCGMNLMRVAH HGIDLEGACEGVCACSTCHVI+S EV+D LP+ASEDEEDMLD AFGLTETSRLGCQVIV PEM+GI+VKLPAATRNFYVDGHVPQPH
Sbjct: 53 AALQHLERRRGISSTARACHGDHEEGFEHAQTVQITWENKDGLKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVKLPAATRNFYVDGHVPQPH 199
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A836C6V2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V2_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.260e-55 Identity = 97/139 (69.78%), Postives = 107/139 (76.98%), Query Frame = 2
Query: 305 RHISSTARAMHGDHEEGFEHSQIVDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
R ISST A HGD E F ++ V + W N GE T A GMNLMRVAH H I+LEGACEGVCACSTCHVIL ++Y LP+ SEDEEDMLDQAFGLT TSRLGCQV+V PEM+GI V LPAATRNFYVDGHVP+PH
Sbjct: 47 RCISSTRTARHGDESE-FANAPNVTINWRNKHGEVRTVDAPVGMNLMRVAHKHDIELEGACEGVCACSTCHVILEDDIYAALPEPSEDEEDMLDQAFGLTATSRLGCQVVVTPEMDGITVTLPAATRNFYVDGHVPKPH 184
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A6U3SGD3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SGD3_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.420e-45 Identity = 80/103 (77.67%), Postives = 89/103 (86.41%), Query Frame = 2
Query: 413 TTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
T KA+ G +L++ AH H IDLEGACEGVCACSTCHVILS +V+D LP+ASEDEEDMLD AFGL+ TSRLGCQVIV EMEG+ V LPAATRNFYVDGHVPQPH
Sbjct: 70 TVKARVGESLLQTAHRHHIDLEGACEGVCACSTCHVILSDDVFDSLPEASEDEEDMLDMAFGLSATSRLGCQVIVTDEMEGMEVNLPAATRNFYVDGHVPQPH 172
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A6T5LJJ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LJJ2_HETAK) HSP 1 Score: 170 bits (430), Expect = 4.510e-45 Identity = 86/142 (60.56%), Postives = 104/142 (73.24%), Query Frame = 2
Query: 296 HGARHISSTARAMHGDHEEGFEHSQIVDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
H R ISS+ HG + + +V + +++ KG Q T KA+ GMN+MRVAHA+ I+LEGACEGV ACSTCHV+L G ++D L ASE+EEDMLDQA GLT TSRLGCQV V +MEG + LPA TRNFYVDGHVPQPH
Sbjct: 29 HQKRGISSSFPHFHGHDDHDVATNPLVSLHFKSKKGMQ-TVKARVGMNVMRVAHANNIELEGACEGVIACSTCHVVLEGALFDRLAAASEEEEDMLDQAPGLTPTSRLGCQVEVTEDMEGATITLPAITRNFYVDGHVPQPH 169
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A7S2W496_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W496_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.070e-44 Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 2
Query: 365 SQIVDVTWENAK-GEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
+ +V + W + K G+ HTT ++ G +L+ AH GIDLEGACEG ACSTCHV+L+ EV+DGLP+ASE+EEDMLDQAFGLTETSRLGCQV++ P M ++LP ATRNFYVDGHVP PH
Sbjct: 38 ADLVTLRWAHKKTGQVHTTHSRVGDSLLEAAHRSGIDLEGACEGSVACSTCHVVLAPEVFDGLPEASEEEEDMLDQAFGLTETSRLGCQVVITPGMHETTIELPVATRNFYVDGHVPTPH 157
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A4D9D0M2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0M2_9STRA) HSP 1 Score: 166 bits (421), Expect = 7.690e-44 Identity = 76/135 (56.30%), Postives = 102/135 (75.56%), Query Frame = 2
Query: 317 STARAMHGDHEEGFEHSQIVDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
+TAR HG ++ +++ +++ W KGE+ TT G +++ AH H ++LEGACEGVCACSTCHVIL V++ L D SE+EEDMLDQAFGLT TSRLGCQV ++ +M G+ +KLP+ATRNFY+DGHVP+PH
Sbjct: 37 ATARVAHGSGKD-LKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMNGLKIKLPSATRNFYIDGHVPKPH 170
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A7R9YEK4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEK4_9STRA) HSP 1 Score: 165 bits (417), Expect = 5.130e-43 Identity = 90/177 (50.85%), Postives = 109/177 (61.58%), Query Frame = 2
Query: 260 LLMRIGAAVSRRHGARHISSTARAMHGDHEEGFEHSQIVDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEG-----------------------VCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
+L R + + + GAR HG E F + V + W + G T+A GM+L++VAH GI+LEGACEG VCACSTCHVIL +VYDGL +ASE+EEDMLDQAFGLT TSRLGCQV V M+G++V+LPAATRNFYVDGHVPQPH
Sbjct: 17 MLRRAASLLLQPAGARAFHRARALAHGGAE--FLGNATVKLRWRDKSGVDTETEAHVGMSLLQVAHRQGIELEGACEGGLGAVEAAFQRALRRTSWRFALGVCACSTCHVILQADVYDGLDEASEEEEDMLDQAFGLTPTSRLGCQVRVDESMDGMVVQLPAATRNFYVDGHVPQPH 191
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: W2JPT8_PHYPR (2Fe-2S ferredoxin-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2JPT8_PHYPR) HSP 1 Score: 157 bits (398), Expect = 6.530e-41 Identity = 84/157 (53.50%), Postives = 104/157 (66.24%), Query Frame = 2
Query: 251 GPLLLMRIGAAVSRRHGARHISSTARAMHGDHEEGFEHSQIVDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
G LL R G A + R ++A A+HGD + F ++ V + ++ +AK GM+++ VAHA+ IDLEGACE ACSTCHVIL V+D L +A EDEEDMLD AFGLT+TSRLGCQV V + EG V LP ATRNFYVDGHVP+PH
Sbjct: 6 GQRLLSRTGPA----NAPRFFHASAAALHGDMSK-FANNPTVHIKFKLRDDSIKEVEAKTGMSILDVAHANDIDLEGACESSMACSTCHVILEDPVFDELEEACEDEEDMLDMAFGLTDTSRLGCQVFVTEDFEGTTVSLPKATRNFYVDGHVPKPH 157
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A1Z5K9M2_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9M2_FISSO) HSP 1 Score: 157 bits (396), Expect = 1.070e-40 Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 2
Query: 374 VDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
+ VT+ + +A+ G +L++ AH + IDLEGACEGVCACSTCH+I+ ++YD LPD SEDEEDMLD AFGLT+TSRLGCQVIV +MEG K+PAATRNFYVDGH P+PH
Sbjct: 38 ITVTFLQPDKTRKEVQARVGESLLQTAHRNEIDLEGACEGVCACSTCHLIMPQDLYDILPDPSEDEEDMLDMAFGLTDTSRLGCQVIVTKDMEGTEFKMPAATRNFYVDGHKPKPH 153
BLAST of mRNA_H-paniculata_contig3214.8653.1 vs. uniprot
Match: A0A0G4ISV6_PLABS (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISV6_PLABS) HSP 1 Score: 156 bits (395), Expect = 1.100e-40 Identity = 72/124 (58.06%), Postives = 91/124 (73.39%), Query Frame = 2
Query: 350 EGFEHSQIVDVTWENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGEVYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATRNFYVDGHVPQPH 721
EG Q + W G++ T+ + G NL+ AHA+ IDLEGACE ACSTCHV+L +VY+ LP+ S++E DMLD A+GLTETSRLGCQVIV P+M+G+ +KLPAATRNF VDG VP+PH
Sbjct: 20 EGGAGKQTISAIWVEPSGQETPTRLEVGENLLNAAHANDIDLEGACECSLACSTCHVVLEPKVYEALPEPSDEENDMLDMAYGLTETSRLGCQVIVRPDMDGMRIKLPAATRNFAVDGFVPKPH 143
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 245.7 |
| Seed ortholog evalue | 1.9e-62 |
| Seed eggNOG ortholog | 2880.D8LDL2 |
| Preferred name | FDX1L |
| KEGG ko | ko:K22071 |
| Hectar predicted targeting category | mitochondrion |
| GOs | GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006091,GO:0006629,GO:0006694,GO:0006700,GO:0006790,GO:0007553,GO:0007554,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008610,GO:0009055,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0010566,GO:0010817,GO:0010893,GO:0016043,GO:0016125,GO:0016226,GO:0016491,GO:0019216,GO:0019218,GO:0019222,GO:0022607,GO:0022900,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032350,GO:0032352,GO:0034754,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048037,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090030,GO:0090031,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:2000026 |
| EggNOG free text desc. | 2 iron, 2 sulfur cluster binding |
| EggNOG OGs | COG0633@1,KOG3309@2759 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03029 |
| Exons | 6 |
| Model size | 2916 |
| Cds size | 639 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3214.8653.1 >prot_H-paniculata_contig3214.8653.1 ID=prot_H-paniculata_contig3214.8653.1|Name=mRNA_H-paniculata_contig3214.8653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MVTALRNVVRPVVAFSSRASRCASSGTIGTSRYHTSKCHQSSSAEAVASS
GVPSAGPLLLMRIGAAVSRRHGARHISSTARAMHGDHEEGFEHSQIVDVT
WENAKGEQHTTKAKCGMNLMRVAHAHGIDLEGACEGVCACSTCHVILSGE
VYDGLPDASEDEEDMLDQAFGLTETSRLGCQVIVAPEMEGILVKLPAATR
NFYVDGHVPQPH* back to topmRNA from alignment at H-paniculata_contig3214:7082..17387+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3214.8653.1 ID=mRNA_H-paniculata_contig3214.8653.1|Name=mRNA_H-paniculata_contig3214.8653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10306bp|location=Sequence derived from alignment at H-paniculata_contig3214:7082..17387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTATGGGCACGACATGCACGTGCACTACACTCAGACACAGCACGGTCAT
CAAACGTGTGGCGTGTCTCCGGTTCTCTATTCGGGATGGTTACAGCATTG
AGAAATGTTGTGCGGCCAGTCGTCGCTTTCTCCTCCCGTGCTAGTCGGTG
TGCATCTAGTGGTACAATAGGAACAAGTCGCTACCATACGAGCAAATGCC
ATCAAAGTTCTTCAGCTGAAGCAGTAGCTTCTAGCGGGGTGCCAAGTGCA
GGTCCACTATTATTGATGAGGATAGGAGCAGCAGTGAGTCGGAGACATGG
GGCGAGGCATATCTCATCTACAGCAAGAGGTGAATAAGCAGAAGTAGTGG
TACCGGAGGCGTACCTGTTTGGCGTTTCCAACTCTCCAACTACCTCGATA
TTGTCGCAGTTGAAGTCACAGTTGTACAGACAGTAGTCAAGTACAGGTGC
AAATATATGTACTCCCTCTGCAGTCAACGAATGTGTCACAGCTAGTCAGA
GGAAGTCAGGTCACCACGCTGCCTGTACGGTGTCGGCAGCGATTGTTGTC
TGCCATGAAATGGTTGTTGTGCGAAGTAGCTGTCATCAGTCGCCACAAGA
AGTTAAAAATCATAAGTTTTTGGGAAGCTATGGCGGCGGGTATACCAGGT
ATTGGTTGCGCATTCCTGTCTGCTCTTTCTTCGTGTAATTTACGACCGCT
GCGCACTACTATAGATGTACAGCAGAGCACATGAATAGTAAAGGCCGCCG
ATAAGCTTTGGATGAACTGCAGGTGTAGGCCTAAACAAGAGAATTGTAAT
GTCTTGAGGCTCTCTATTTTCGGTATCCTCTCCGTCATTGACATCTTAAT
CTTAGTGTCGCCTGTGCTAACTTCAGCACCAGTCTCAAAGCCCACCGCCT
CGAATCCTCGAGCACAGTTGCAAAATCAGTGGTGGAAGTTCGGTCCTGGG
ATTGCCACGAACGCAGAAAAACTCACTTCGTAATCGAAATTACATTGAAC
TTTTCTTTCAATCCTGCGAGGGCTGTTCTCCACAAGATCCTAAACACGCA
ATCTCCACCTGCAAAAAAAAGGGTAAACTCAGTTGTATTTGTCATTACGG
AGATAGGGAGCCGTCGTTGTTCAGACAGATAATTGGTATAACCTATCACA
ACGATTATTACTCTAGGTAGCACTCGACCCCAATTGTCAAATATATGGTG
GTTCGAAAATAACCTCCAGCGCTCAAACGGTTGACTCACGGAGCGGCACG
CGCTGAGCACCTCTATGGTCGGCAGGTGATCGTACACGTTGAACAAATGA
GAAAACGCTGTCTACTGTAGAAATTACCGCGTGCGGCTAACGGGACCAAC
CTAAGAATACTGGGTATTTCACAGTACCGCAAATAGTAGGAAATCCCAAA
TTACTGGGCCAAGTAGTGAGTAGTTCCCCCCAGTAAATACTGGCGATATT
GAATACCCCAGTATTAACTTTGAACAACCGGGGTATTTTGTAATACCACC
ATTATTTGTTCTTTTATGTATGAATGTATGTATGTTTGATACAAATTGAG
CATGAGCGATAACAGCGGCACCAACAGCTCGACAGCACTCGTGGTGGGCT
CACGCACGGTGACAGGAGACACTACGGTAGGTCCAACGTCGACTATTCAG
GCGACACGCTCGAGTCACCCCGCGGTGGCATCCCCGAGTCACTGTGCCGC
CGCGCCAGCAGCGACTCAGCATAACGTGGCGGGGTCCTTCTCCGATCGGT
GTACAGGCGGCGCACCTGACGATAAGGTCATAGCGCCCGAGTTACCGTAG
ACGTTCTGAATGGATACACAGGTCCCCGTTGATTTGTAGGACGTCGTGAA
ATAGGAGAGCCTTCATACTGTACCCTCTGGGTTCGTCCGTAGCAAGAAGT
CCGTGTTGATTTATTTTGTCAATTGATCCACGTCAACCCCCCAAATTATT
AGGCAGTCCCCCATTCAATTCTGGAACCGTCATTTGATTCTCTGTATAGT
GCGATATTTCGTAGTATCGCCAGTATTTATTCTGAAAACGTTGGGTAATA
AAAATGATCCCATTTACGTACTCCTAAAAATACTAGTGTACATTGACTAC
TATGCTCCACTGACAGGACCTTGGAGTGTTTTTTTAAAGTGAGTCGTAAG
AAGGGCTACCAGTCCAATAGGATTGTCCCCCAATCCATCGCGTGTTCGTT
TGGCCTCGGCTACTGTGTGTCATCTTTCTGTCGTTCAGTTGTGGCAAGAC
AGTCAGAGCACAATGGTTGGGGCCAGTATCACCCTCCTCCTCTCTTTCTC
CCTCCGTGCTGTCGTCTGTAGCAGACATAAACTATTCTCGTCGTTTGATA
CAATACAACTTGATCGGTTTACTTAATAGTAAAAGCCGGACGTATCACAC
CGGGGTGCCAACTCTTTTCAAACGCGAACATCTCGACAACCACAGCGCTA
GGTACCGACAGCCATTAGTGTGTCGCTGGAAACATCATGCCGAGCTCTGT
CGATGAGATGGGCTCTTTCAACTGCGTAGGGTCCCCGTTCTCGAGATAGT
GTGTCTCGAAAATGTTTGCCCACCGTTGCGATACGTCCGGGTCTTCGGGT
AAACGATCCATGCGTTTTTCTGTTGGCTGTGCACTTGGGTGAAGAGCAGG
GACAACAGAAGACGCCAGTTGAGATTGGAGTCATAACCTTTGCTACTCTA
AAGCACAATCATAGCCAAACAGACCACGAGCGCTGCTTTTCTTCGTGAAT
GCTAATTGTAACCGCATTTTTCACTCTACAGTCTGTGATGGCTACCAACC
ATTTGCTGTTACTATCAATCCCTCGCTGTTTTCTTCGTCGCACGTCTTGC
CCTTATTTGACCGTTGGGGCAACGGATGGGCTTTGGGTCTGGGTACACAC
TCATTCCGCGGCTCGGTGACAATGTCCAAATCATGGACTGTACAAAAAAC
ACAGCGATGCACGGTGACCACGAAGAAGGGTTCGAGCACTCCCAAATGTG
AGAAAGGGGGATTTCTGCCATTAGGTATTTGAAGAAATGAAGATAGCCAG
TACTAGAGGGACGGCCAAGTCATGCAGTCCGCGTTTGAATTGGTGGGTGC
CCCGCCCCTTAAGCATTCACATCATGTCAAGATCCATATTTTTTTTTGTC
AGAACGTTCTGACTGGTGTAAATTTATTTCCCTTGTCAAACTCTACGCTT
GTGAGGATTTTCTGTTTGTTTGCTTTTTGCAAGAAGCTTTTGCGTAGGAG
TAGCCAATTTCGCCTTTCGAATACTTGGTCCCTTGATGTCTGTCTCTGTT
TGTCTTTCATTAATTTTGCGGTTGGCTCAATTTGACTTGACTTGGTTTGG
ACGACTGCCCCGGTGTTTCCGCTGTGTCCCCCTGGACGTTCAACGTTTAT
TTACACGCTCGATGTAGTGTGGACGTGACGTGGGAGAATGCTAAGGGCGA
GCAGCATACAACCAAAGCCAAGTGCGGGATGAATCTGATGCGAGTAGCTC
ACGCGCACGGAATCGACTTGGAAGGTTAGCAGCTTTCCTCAGAGCAACTG
GCAGTTTCTTGTCTGTACTTCGTTGCACGCAATGTAGTTACACACATTTT
CTTGTTGAACCATGGGAGGGGCGGGGGCGTAGTCATGTTTTGCATACCTT
AGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTTAACCCCCGGAAG
GCTGAGGCAAAAACCTTTACCGCTGCTTCCATACTGAGGTGTTTACCCAA
GCATGTCTACATTTACTCCAACAGAACAGTTATTTATTCCTCTGCGGGGT
AGACACCACCCTGGTTTGGCCGTAATACCTTAGTTGCTTTTGTTTTGTTT
TAACCCCCGGAAGGATGAGGCAAAAACCTTTACCGATCCTTCCATATTTG
CATACCTCATTTGTTAAGACTATTGACTACGCGTCCTACGCGTCCTCGGC
AGGACAGGGAACGGGGGACTATGTCAGAACTCTATCGCCAAGTACAGCAT
AGCAGCATCACCACATGCACCCATTGTCGAGGACACTTTCGCCAGCAGAG
CAGCATCTACTCTCCTACTAGAATACTGTTCGGAAAACGTACCCTGGAGT
AAAACCGAGTCATCGGTAAAAGAGAATGGATGAGTGTACAAAACATGACA
AAAAGCCATAAAACAAAGTGGGGGTATGCTCAGCATCTTGAAGCTGGTAC
ACGACTGATTATTATCCACAAAACAAGCAAACCAAACCAGGGGTGCGTTA
CGTCAGTTATACGTGTCTACCTCGTGTGACGTTATGTACCCTGTAACTGT
AATCGTAACTCGTAGTGGAGATGACCACGTTTACGCCCGTGCATATCTTG
CTTGTCCTAAACCCACGGACTCGCTGCGCTCGCAATGGCTGGCTAGACTT
GCATGAAGATTCGTTTTGTAAGAGTCACTTAAGTGTAGCCTTGAAAAGAT
GTTCCGAATCTACGGCGGCCACCTCACTAATACCGTAGCAATCAGCAAGG
ATTTTCATCAGCAAAATAATCAAACACCGGGGGTGTTATGCTTGTGTTCT
TTCATTTGCATGTGCTTTTGTTTCTTTATATCTTTTCCAAGTCAAAGTAT
CAAAGTATCGTACGGTACACATGCAGTTTCTGTTAAGTCTTGATTCCCTT
CTATTTTTCATTTAGATTGCCGATATACATTTTCTGTTCTCGTTCTTGTT
TGTTGATTGTTCAGGTGCCTGCGAGGGCGTGTGTGCTTGCTCAACATGTC
ACGTGATCTTATCGGGGGAGGTGTACGACGGTCTGCCGGACGCTAGTGAG
GACGAGGAAGATATGCTTGACCAAGCCTTCGGACTCACAGAAACGTGAGG
CGTGGAACATGAATTTATATATTTTATATATACACTTCTTTTGTGCCATT
AGCAAAGTCGGTTGTGTTGGCAGATCATATCTCCAGATATCGGACTGTTC
AGAGGCTGGAGTTGCAATCGTTGGAAAGCTAAATTCTGATGAGCTCATAC
GCGCTGTTCCGAAGTGTAATCCGATTTGTGTATCAGAATTACTGGCCGTT
CAAGGTTGAGCAATCTTTGACCATTTTCCACCTGTTTTTTCGATTTTCAA
GTTTTTCCATCGGCAAAACACGACAACGAGCAAAACATGTTTTTTTGTAT
CAGCCCACATGTTTTTTTCGCCCCGCGCGCTCTTCATGGATTTCGCCAAA
TTCTCTGAAATTTTCCGGGAACAACCCCGAAAACATGTAGAATTGTAACT
AGAAAATAATTCGGAGATGGTTACGTTCCTACATAAATTCCACCGACTGT
AGTTATGGCACAGAGGAAGTATACTATTTAGGTGAGACGTGCACGTGTCC
CCAAAGTTCGGGTCTAACCCGTGCAGCTTGACGAGCTAAATTTTGTATTT
TTTTTGTATTTTGTTTTTTTTTTGTATTGTAGCATTGCTTCGCCCTGGCC
CTTCGACCTTGACCTTTCGCACCTAGCGTTTTATCTAGTATGAGTTTACA
GTACCAGTGTATCAATTACATACTTGTTCTGCCGAGGAAGTTACAATCGA
CCGAAATAAATCCTACTTTAAACGCCAAATACTGGTAAAGGCGATGATCG
TGTTTTATTTTTAGACAGGCAACAAGGGCATCTATATATCCATCTAGCTA
GCAGCGTGTGTCGGCTCGACCTATCGCTTTGCGTGTTGTCCGTTGGAATT
CATTCGGTGGTAAACTACAATCGATGTGTTTTTTTTTCCCGCCCAGTTGG
ACGGGAAGGTTGGAGTTGACTTGATTTTATTCTCGTGAATGTGAAAGGGC
CGTGATGTGACATACTCCAGTGGTATAGATTACACAGTAGCTTGGTCAAT
GAAATTCTTAGTATAGAGTTCACGACACTATACCGTCGTATCACCTACGG
ATAGGAGTGAAATTCAATTTTCCCTTGTTTTTAAGATCCAAAATGAGAAA
TTCACCAGCCAATTCGAAAGTGAAGGGCGCCAGCAGGTGAAATTAAACCG
CCAGGCTGGCGGGCACACGCGTGTTTTTTTTTTTTTGCCCTCTAAATATG
AATTTTCTACTCATCGGTTGCTCACAACGTAGCCTGTCCCATCAGCTCAC
TTGCAATTTCAGGTTTCGCGGCCGAACGTCAGTTGGTGTCGAGTTCGCGA
CGGTAGCTTACGATAGAAAGGAGCAGAATGACACATGAATGATTTGATGA
AAACATAAGTGCAAGGTCCGCTGCGCTGCGGTGCGTCGAATGCGGGCTAC
AGATTTAGACATACCCGGACAACACTGCAAGCTTCAGCATATACCTGGAT
AGCTGAGATCTTTTATAAGCTCAGGCCTCCCTCCATGGTTGAACTTGAAT
ATATTTTTGTCCACATTGTGTGAAATCGAGCGGTTTCTTGTCTCAACGTT
CTCAGCTTTGTTGTAGGAAGGTGTTCTCCGCTGCGCTGCAGCAGCAGCAG
CAGCAGCAGCAGCAACGACACGTTCACATGGATGAGCCTGTGTGCTCCTC
TTTGCTCTGTTATGCGTCGTCGTTTTTTGTGACATGTCGACAGGTCGCGT
CTGGGATGTCAAGTAATTGTCGCGCCAGAGATGGAGGGCATTTTGGTGAG
TCTCATTCCTCTGTTATCATGTCGCACGTAAGGATAGTGCTAAAAAGGGT
GGCCATTGCCGGACTGTTTTCAACTCTGTCACGTACATTCCAACCATGAG
TACAAAAACTCGAGTTGTTGCGATGCAGCGCCTCAGAGTAGCGTGTAATG
CCGCGGAGGCCTCTTGTATCGAATTGTATCTAGAAACCCAAGGTATACCT
AGCCTAACCTGCCTAAGTTGGGCATCAGCTTGTTCAGTCCGCATTTTGGT
GGATTTTGTCCACTTGCGTACCGTATACCTTTTCCTGTCCGAGCGTAGCG
AGCCGTTGCGTTGTGTTGTGTGTGTGGGTCGACCACAACTTGAGGGTTGT
GCAGGTGTAGCCGTGTCTGTCTGTACTGGTAATAAGGGGACGTACAGCGT
TACAGCGTCTGACCGAAACGATCAACAGTTTATGCGGTGATATTGCGTCG
TGAATTCGTCGCAAGTGGGCTACATCCCATGTCTAACAAGAGTTTAGTGG
TCGAAACACAGGTGACAGTACTGAGCTTAAATGTGCATATTTGACTAGGA
TGAGTAGACTCTTTATTAAAAGACATGGTATTTAGAATATTATAAGGTGA
TTCGAGAGATAAGCATCATGGTCATTATCATAGTCGTGGCCACTAAAATG
GTTGAACAAACATACACATGAGAAAAAGAGAAAAAAAAAAGAGAAAAGAG
CTTCTGACGTTGGTAAAAATCGGCCAAACTGTGCCTTATGGTCTTTATGC
ACGCCACCGCGCAGTTGGAGTGTGAAAGACACGAAGACGTTAGACAATTC
CTAACATTGGAAAAAGCGTTAGTCATTTACTCTCGACATGGTGTGCCAAG
TTCAGCTCTTATAATACGTATTTTGCCGCGCGAGCGTCATACTGTAAAGC
AGTTGAAAAAAATTACAAACTGCTGGACAACGATTGCAGGAATACCTTAT
AACTAGTATGGCCGCGGCTACGCCTGTGCAGTTTGTATTTTTCCACGACC
GACGTACTAATTGTCCTCCCAGCGGGGGCTCGTGTACCGAATAACACTAC
TCGCTACGCTGGTGAAGATTCGTTTTTCGGAAGAGTTACGTGAGTACAGA
TTTAAGAAGGTGTGCGGAGACGACGACAGCTGTTTCAGTTGATGAAGATT
ATCTGCGAAAAACACGAACAGTGTCCTGTCGAAACGACCTTGCGGAGATC
TGTCGATTGACAGGTTCTTTCGGTCGCGTAAGATCCCCGTTCTCGAGATC
GAGTTGCGTTAGGAAAACGTACCCACCCCGGTATAAAACCTCTGGGTTTT
AGGTTATGGTGTCAGATTTGACTGAATGTACCACTTTTGCTTGAAGGAAA
TACCAACTCTCCGAGATGGGTTCTCCCATATCTCTGTTTGCTCCCATATC
TCTGTTTGCTCCCATATCTCTGTTTGCACTTGTTTCGTCCCCCTTATGCA
GGTAAAACTTCCGGCTGCCACAAGAAATTTCTACGTGGACGGACACGTTC
CTCAACCACACTGATTGGCCCACAATTGAGCGAGCCATTCTCCCGGACCC
GCTTGTTAACATATTGGATGGAGGTTGTTGGCGGTCCATTCATGGCGATC
AAGGGTTGAAAAGCTTTGTAACTGTGATGATTAGGGTTGTGTATATTGAC
ATCTATCGCATTGGATAAATCGCTATGTCTGATGTAACGTATAGGTGTTC
GCCGTTACCAGGGACACATTATGAGATATCTATCATTAGCCGTCGAAAGT
ACGAAATACCACTCTTTAACCGTGTTACGTCGCCGTTTGGCGTTCGTGTG
TGTTATACCAGCCACAGCTGTAGTACCACAGAGGCACATGATGAGCTTCA
GAAAGTGCTGCAGACTCGGCAATTTCAAGAACCTGCTGGTCCAGCCAGCT
CGGCTGCCTGCCTCGTATGTCAGACGTTTACCATAGCGCCGAATGTCAGC
TTGTAGATGAGGTTGAAAAGGATGAATACACATCAATCATAATATGTGAA
AAATAATGAGCGTTTTCCAAACAAATCCGTGTGGGCCCCCTGCTCGCGGG
GGCGCTCTCCCGGACGTTCCGTGACGGAGGCTGAGCTGATTTTCTCTCGA
TATATCGTAACATAGAGCTACAAAAAGTATGTCCTTCTATTTCATTTGGT
AAGGTGGTGATCGTTATTGTCGTTTCGAAACAGATTTTCAAATCTGCACT
CAAGTGACTTCTGATGAATGAACCTTCATGCGATGGTCGAGCGTCGCCGG
CCAATTACTGAGCGCAGCGATGAAGCAGTCAGTGCTGTCACCAGCGCCAG
CCCCCACTGCGAGCGCAGCGACTCCGTGTGTCAAAGACAAGCATCAACCG
TACGGGTGTAATGGTGTTTCTACTGCTAGTCATGTCGTTGAAGGTGACCG
ATGCACACCGCTGGTGATGAATATAGCTCATATAACGAACGTTGCAGCTT
GAAGGTCCGGCAATGAATGCGTCACTGCGGTTAGGGGCGTCCGAGTTGGT
ATCGGTTTACTACATCTTCCCCATGGAGGATTTGAAGCTGTTGGTAGCCT
TGGGACATTCGTCAAGTGCGTAACGGAGGATGAGTAGTAGTCCAGTGGTG
CGTGCCAAGGCCGCGGCTGATATCAGCTGGGGAGGTCATGCGGTCTTCTT
GAGGCCAGCTGAAGAGACCATGCGCTCCTCTTCTGTGTTTGTTGGGTATA
GTCTGTTTTCGTTCCGTTTGTTCGTATTGTTTTGTGTGCTTATGCCGTTG
CTCGTTATTTTATTTTTATTTTTTATGTGGTTTATCGAGAAAACACCGCA
GAAAGCACGTTTGAAAATCTCAAAGCCCCGTGATGATGTCCATCAATAAC
AACACTGTAACAACTGTATTATCATAAGCACGACTTGATAACCCTCCTCT
TCTTCATAGTCATGATGGCCATGATAATCATCACCATCATCGCTCGATTT
TTGTTGGCTATTGGTGGGGTCACATCTGCGCTTTAGTTCATTCTTGTTGG
TTGGTTGGTTTCAAGAGAGCAAGGAGACCGTTGAGAATAGTACAATAATA
ACTACCTTATTTCCTTTCTATTCCGCTCAAGGCACCATGACTTCTCAACT
TTCGCAGCAAAGTTGCCAATTCTTCAATCATCCCGACTGGAGTGCTGGAA
CCGTGGTGCGGTGTCTGGATGCAGTTGTTGCTCCACAGACACTACAACCT
CTGACCATTGATTGCTATAGTTTTCCATCGTCATACATCATTGTATAACG
ATCATTTCGTTCCCGTTATTTCAGATCATGAAGTATCCTCTCCCCCAGAA
CCACAGATGAACATAAAAATGAAATGAAAACAGTACCATCCTGTATTATC
CAAAAATATATAAATAACAGAGAGATGACATGCAGTGTACCCTGGTTTTA
GTCGTAGCATCTCATCGTGCTTTTACTCTTACAATCTGGTCTCAATGAGA
CCTGTCAGATTTGCCCGTCACATTTTCTTGAGATGGTTTTGCGAGTTAGG
CCATCTCCTACAGCGTCAACAATAGTCTCCAATCGAAATACATAAATTGT
TATTTTTCGCTGTGCAAAAATCTGATAATGAAAGAATTATTCGTAGCCTT
TAGACCCTTTCTTTTTCCAGAAACGTTGTATATAGCACTAATACAAGTAT
ACCTCTTTTAATATCGGTCATGGCTGTCGATAAATCGGGTAAAAATGGAG
TTTGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3214:7082..17387+ >mRNA_H-paniculata_contig3214.8653.1 ID=mRNA_H-paniculata_contig3214.8653.1|Name=mRNA_H-paniculata_contig3214.8653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig3214:7082..17387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTACAGCATTGAGAAATGTTGTGCGGCCAGTCGTCGCTTTCTCCTC
CCGTGCTAGTCGGTGTGCATCTAGTGGTACAATAGGAACAAGTCGCTACC
ATACGAGCAAATGCCATCAAAGTTCTTCAGCTGAAGCAGTAGCTTCTAGC
GGGGTGCCAAGTGCAGGTCCACTATTATTGATGAGGATAGGAGCAGCAGT
GAGTCGGAGACATGGGGCGAGGCATATCTCATCTACAGCAAGAGATGGTT
ACAGCATTGAGAAATGTTGTGCGGCCAGTCGTCGCTTTCTCCTCCCGTGC
TAGTCGGTGTGCATCTAGTGGTACAATAGGAACAAGTCGCTACCATACGA
GCAAATGCCATCAAAGTTCTTCAGCTGAAGCAGTAGCTTCTAGCGGGGTG
CCAAGTGCAGGTCCACTATTATTGATGAGGATAGGAGCAGCAGTGAGTCG
GAGACATGGGGCGAGGCATATCTCATCTACAGCAAGAGCGATGCACGGTG
ACCACGAAGAAGGGTTCGAGCACTCCCAAATCGATGCACGGTGACCACGA
AGAAGGGTTCGAGCACTCCCAAATTGTGGACGTGACGTGGGAGAATGCTA
AGGGCGAGCAGCATACAACCAAAGCCAAGTGCGGGATGAATCTGATGCGA
GTAGCTCACGCGCACGGAATCGACTTGGAAGTGTGGACGTGACGTGGGAG
AATGCTAAGGGCGAGCAGCATACAACCAAAGCCAAGTGCGGGATGAATCT
GATGCGAGTAGCTCACGCGCACGGAATCGACTTGGAAGGTGCCTGCGAGG
GCGTGTGTGCTTGCTCAACATGTCACGTGATCTTATCGGGGGAGGTGTAC
GACGGTCTGCCGGACGCTAGTGAGGACGAGGAAGATATGCTTGACCAAGC
CTTCGGACTCACAGAAACGTGCCTGCGAGGGCGTGTGTGCTTGCTCAACA
TGTCACGTGATCTTATCGGGGGAGGTGTACGACGGTCTGCCGGACGCTAG
TGAGGACGAGGAAGATATGCTTGACCAAGCCTTCGGACTCACAGAAACGT
CGCGTCTGGGATGTCAAGTAATTGTCGCGCCAGAGATGGAGGGCATTTTG
GTCGCGTCTGGGATGTCAAGTAATTGTCGCGCCAGAGATGGAGGGCATTT
TGGTAAAACTTCCGGCTGCCACAAGAAATTTCTACGTGGACGGACACGTT
CCTCAACCACACTGAGTAAAACTTCCGGCTGCCACAAGAAATTTCTACGT
GGACGGACACGTTCCTCAACCACACTGA back to top
|