mRNA_H-paniculata_contig32118.8645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32118.8645.1
Unique NamemRNA_H-paniculata_contig32118.8645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A813B7B0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B7B0_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 7.410e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCA+GVGGADAVDVMA
Sbjct:  170 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAVGVGGADAVDVMA 212
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A662Y503_9STRA (Aconitase domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y503_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.370e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  157 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 199
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: K3W6K0_GLOUD (Aconitate hydratase, mitochondrial n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W6K0_GLOUD)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  181 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 223
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A836CC46_9STRA (Aconitate hydratase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC46_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  182 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 224
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A8K1CDT1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDT1_PYTOL)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  177 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 219
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A2D4BXR5_PYTIN (Aconitate hydratase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXR5_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  175 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 217
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A6H5KUD2_9PHAE (Aconitate hydratase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  173 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 215
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A8H3F0X9_9LECA (Aconitate hydratase, mitochondrial n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3F0X9_9LECA)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  157 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 199
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A061S7A7_9CHLO (Aconitate hydratase, mitochondrial n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S7A7_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  167 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 209
[Close]
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Match: A0A2A4NZY2_9BACT (Aconitate hydratase A n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A4NZY2_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 3.800e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 129
            IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
Sbjct:  146 IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32118.8645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813B7B0_9DINO7.410e-2097.67Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A662Y503_9STRA3.370e-19100.00Aconitase domain-containing protein (Fragment) n=2... [more]
K3W6K0_GLOUD3.800e-19100.00Aconitate hydratase, mitochondrial n=2 Tax=Pythiac... [more]
A0A836CC46_9STRA3.800e-19100.00Aconitate hydratase, mitochondrial n=1 Tax=Tribone... [more]
A0A8K1CDT1_PYTOL3.800e-19100.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BXR5_PYTIN3.800e-19100.00Aconitate hydratase, mitochondrial n=1 Tax=Pythium... [more]
A0A6H5KUD2_9PHAE3.800e-19100.00Aconitate hydratase, mitochondrial n=2 Tax=Ectocar... [more]
A0A8H3F0X9_9LECA3.800e-19100.00Aconitate hydratase, mitochondrial n=1 Tax=Heterod... [more]
A0A061S7A7_9CHLO3.800e-19100.00Aconitate hydratase, mitochondrial n=2 Tax=Tetrase... [more]
A0A2A4NZY2_9BACT3.800e-19100.00Aconitate hydratase A n=1 Tax=Planctomycetes bacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32118contigH-paniculata_contig32118:1943..2071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog115417.EPrPW00000020856
Preferred nameACO2
KEGG rclassRC00497,RC00498,RC00618
KEGG koko:K01681
KEGG ReactionR01324,R01325,R01900
KEGG Pathwayko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00173,M00740
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000002,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006520,GO:0006536,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009064,GO:0009295,GO:0009605,GO:0009607,GO:0009987,GO:0015980,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031012,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0032502,GO:0035821,GO:0035900,GO:0042645,GO:0043167,GO:0043169,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0044003,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044416,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055114,GO:0061008,GO:0062039,GO:0062040,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0075136,GO:0080134,GO:0097159,GO:1901363,GO:1901564,GO:1901605
EggNOG free text desc.Aconitate hydratase, mitochondrial
EggNOG OGs1MDC0@121069,COG1048@1,KOG0453@2759
EC4.2.1.3
COG Functional cat.CE
BiGG ReactioniMM904.YLR304C,iND750.YLR304C
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.415858-CDS-H-paniculata_contig32118:1942..20711622929990.415858-CDS-H-paniculata_contig32118:1942..2071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32118 1943..2071 -
1691481100.6273592-CDS-H-paniculata_contig32118:1942..20711691481100.6273592-CDS-H-paniculata_contig32118:1942..2071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32118 1943..2071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32118.8645.1prot_H-paniculata_contig32118.8645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32118 1943..2071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32118.8645.1

>prot_H-paniculata_contig32118.8645.1 ID=prot_H-paniculata_contig32118.8645.1|Name=mRNA_H-paniculata_contig32118.8645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
IVLENYAFPGGLMIGTDSHTPNAGGLGMCAIGVGGADAVDVMA
back to top

mRNA from alignment at H-paniculata_contig32118:1943..2071-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32118.8645.1 ID=mRNA_H-paniculata_contig32118.8645.1|Name=mRNA_H-paniculata_contig32118.8645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig32118:1943..2071- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGTCCTTGAAAACTACGCCTTCCCCGGAGGGTTGATGATTGGAACGGA
TTCGCACACTCCGAACGCTGGCGGGCTCGGCATGTGCGCGATTGGTGTCG
GTGGAGCCGATGCCGTAGACGTTATGGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig32118:1943..2071-

>mRNA_H-paniculata_contig32118.8645.1 ID=mRNA_H-paniculata_contig32118.8645.1|Name=mRNA_H-paniculata_contig32118.8645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig32118:1943..2071- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGTCCTTGAAAACTACGCCTTCCCCGGAGGGTTGATGATTGGAACGGA
TTCGCACACTCCGAACGCTGGCGGGCTCGGCATGTGCGCGATTGGTGTCG
GTGGAGCCGATGCCGTAGACGTTATGGCTATCGTCCTTGAAAACTACGCC
TTCCCCGGAGGGTTGATGATTGGAACGGATTCGCACACTCCGAACGCTGG
CGGGCTCGGCATGTGCGCGATTGGTGTCGGTGGAGCCGATGCCGTAGACG
TTATGGCT
back to top