mRNA_H-paniculata_contig3208.8637.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3208.8637.1
Unique NamemRNA_H-paniculata_contig3208.8637.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: A0A6H5JUF1_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF1_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 6.970e-88
Identity = 135/235 (57.45%), Postives = 170/235 (72.34%), Query Frame = 1 
Query:    1 AWAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGG-LGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQ----PNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELLVSQ 690
            AWAGGSAS FNKW   +P+ VE+ AL+ PGRM RS E+ LTS+  +V+G+A+AL TM LLDKPFALFGHS G+LV++ELARKL +D G  P  L+VS C PP M VGG   P +SQLPRD  VDHL+ LGGMP ELRDQ E++D+FLP IRADY A E Y+    P  +  P+ CP++CLGG ED  A R+DL  W++LT  EFRL+ F GGHFFL+ +G+  VL +L  +L  +
Sbjct:   27 AWAGGSASSFNKWTSKMPEAVELHALEFPGRMRRSKEDSLTSVSAIVEGVAQALVTMGLLDKPFALFGHSFGSLVMFELARKLKEDAGKIPVYLVVSGCCPPDMCVGGGRSPPISQLPRDALVDHLIGLGGMPEELRDQTELVDYFLPPIRADYTAYEGYRYEPRPGDDSRPITCPIICLGGEEDGGAPRSDLELWSSLTAGEFRLQMFGGGHFFLQGEGEQAVLTFLGNVLTEK 261
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: A0A838P9F7_9BACT (Thioesterase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A838P9F7_9BACT)

HSP 1 Score: 171 bits (432), Expect = 3.260e-47
Identity = 97/226 (42.92%), Postives = 127/226 (56.19%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELL 681
            +AGG A ++ +W DSLP ++E+  +QLPGR +R  EE  T +  +V  I++AL  +  LDKPFA FGHSMGALV +E AR+L   NG KP  L VS C  P +        +  LP  E +  L  L GMP E ++  E++   LP++RAD    E Y    E  PL CP+   GG +D    R DL  W   TT  F LR F G HFFL+   QA +L+ LS  L
Sbjct:   28 YAGGGAHIYREWLDSLPVSIEVCPIQLPGRGARMMEEPFTQMSSLVQAISEAL--LPYLDKPFACFGHSMGALVGFEFARRLRSQNGPKPIHLFVSGCFAPDIPDSD---PLHNLPDSELLAELHRLNGMPKEAQENAELMRLMLPTLRADCTVTETYTHTKEP-PLDCPISAFGGLQDQMVSRDDLEAWRKHTTASFSLRMFPGDHFFLQTAAQALLLRVLSREL 247
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: A0A7W1JCP2_9BACT (Thioesterase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W1JCP2_9BACT)

HSP 1 Score: 168 bits (426), Expect = 2.580e-46
Identity = 99/227 (43.61%), Postives = 128/227 (56.39%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPS-VSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELL 681
            +AGG A ++  WPDSLP ++E+  +QLPGR +R  EE  T +  +V   A+AL  +  LDKPFA FGHSMGALV +E AR+L   NG +P  L VS C  P +S     P  +  LP  E +  L  L GMP E ++  E++   LP++RAD    E Y    E  PLACP+   GG +D    R DL  W   TT  F LR F G HFFL+   Q  +L+ LS  L
Sbjct:   30 YAGGGAHIYRAWPDSLPASIEVCPIQLPGRGARMMEEPFTQMSSLVQATAEAL--LPYLDKPFACFGHSMGALVSFEFARRLRSRNGPQPIHLFVSGCFAPEIS----DPDPLHTLPDSELLAELRRLNGMPKEAQENAELMRLMLPTLRADCTVTETYTHTKEP-PLACPISAFGGLQDHMVSRDDLEAWRQQTTASFSLRMFPGDHFFLQT-AQPLLLQILSREL 248
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: A0A7W0JJ68_9BACT (Thioesterase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W0JJ68_9BACT)

HSP 1 Score: 167 bits (423), Expect = 7.590e-46
Identity = 99/226 (43.81%), Postives = 128/226 (56.64%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELL 681
            +AGGS S+F KW + +P TVE+ A QLPGR  R TE   TS   +V   A+AL      +KPFALFGHSMGAL+ +ELA  L  + G++P  L VS CR PH    G G     LP  EF++ L  LGG P+E  +  E++   LP++RAD+   + Y+ +    PL CP++  GG +D    R  L  W NLTT  F L    G HFFL    Q  +LK L E L
Sbjct:   27 YAGGSGSIFLKWQEHMPATVEVCAAQLPGRGPRLTEPPYTSCRPLVLSAAQALKPH--FEKPFALFGHSMGALISFELAVHLRSEYGLEPAALFVSGCRAPHAR--GNGHKSYDLPEPEFIEELRRLGGTPSEAFEFEELMRLVLPTLRADFELSQTYEYS-RTEPLGCPIIAWGGHDDEEVKRDHLEAWRNLTTSAFALHMLPGDHFFLHSS-QDILLKTLREHL 246
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: A0A1C4UP34_9ACTN (Surfactin synthase thioesterase subunit n=2 Tax=Micromonospora TaxID=1873 RepID=A0A1C4UP34_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 4.040e-45
Identity = 97/226 (42.92%), Postives = 127/226 (56.19%), Query Frame = 1 
Query:    1 AWAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSEL 678
            A AGG  S F  W + L   V +  + LPGR SRS E     + D+V+ +A +L+    LD+PFALFGHSMGA V +E A  LA+ NG +P  L VS  RPP M      P + +LP D+F+D +  +GG P EL  +RE+LD FLP +RAD+   E YQP      L+CPV    G  D      ++A W ++T  EF LR F GGHF+L D         L+EL
Sbjct:   23 AHAGGGGSFFRSWRELLTPDVAVVPVILPGRESRSRERPYRRMADLVEALAASLTPH--LDRPFALFGHSMGAAVAFETAHLLARGNGPRPRRLFVSGRRPPTMP--SRRPDLHRLPDDQFIDAVARMGGTPPELLRRRELLDVFLPRLRADFEVNETYQPGPR-TRLSCPVSAFTGDTDPEVDALEMAAWQSVTDGEFVLRVFRGGHFYLVDAAVPLTRVILAEL 243
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: A9GQY0_SORC5 (Thioesterase n=1 Tax=Sorangium cellulosum (strain So ce56) TaxID=448385 RepID=A9GQY0_SORC5)

HSP 1 Score: 164 bits (416), Expect = 9.980e-45
Identity = 96/226 (42.48%), Postives = 134/226 (59.29%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELL 681
            +AGG +S+++ W   LP   E+ AL+LPGR +R +E     +  +V  +A AL     L KPFAL+GHS+GALV +ELAR+L +     P  L VS  RPPH  V G  P +  LP  EF++ +  +GG P E+    E+L  FLP +RAD+   E  +P + GAPL CP+   GG +D  A RADL  W + T   FR+  F GGHFFL+   + P+L+ +S +L
Sbjct:   31 YAGGGSSIYSAWWRELPAHTELCALKLPGREARMSEPPFERLTPLVQALATALEPW--LTKPFALYGHSLGALVCFELARELRRRGAPLPRHLFVSGRRPPH--VRGSDP-LHGLPEPEFLERIRRMGGTPDEVLRDPELLALFLPVLRADFAVNEV-EPFVPGAPLECPISAFGGLDDERADRADLEGWRHHTRGAFRVEMFPGGHFFLRS-AREPLLRSISAVL 249
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: A0A1W1IAP7_9BACT (Linear gramicidin dehydrogenase LgrE n=1 Tax=Nitrospira japonica TaxID=1325564 RepID=A0A1W1IAP7_9BACT)

HSP 1 Score: 164 bits (415), Expect = 1.250e-44
Identity = 96/230 (41.74%), Postives = 130/230 (56.52%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELLVSQC 693
            +AG  AS F  WPD LP  VE+ A+QLPGR SR TE  +  + ++V  ++ AL     LD+PFA FGHS+GALV +ELAR+L +  G++P  L VS C  PH         +S+L   EFVD L    G P E+    E++   LP++RAD+   + Y    E  PL CP+   GG  D     A L  W   + + F+L  F+G HFFL+   Q P+L+ LS L VS+C
Sbjct:   28 YAGAGASAFRSWPDGLPSDVEICAVQLPGRESRITEPPVADLRELVPRLSDALEPY--LDRPFAFFGHSIGALVCFELARELRRARGLEPVHLFVSGCPAPHHPDSD---RLSELSESEFVDRLKQFNGTPPEVLHHPELMQLVLPTLRADFSLRDRYLHRDEP-PLGCPITAFGGMADGHVSGAKLEGWKRHSRERFQLWLFQGDHFFLRT-AQEPMLEALSSL-VSRC 249
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: UPI0019E70683 (Thioesterase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E70683)

HSP 1 Score: 164 bits (414), Expect = 1.530e-44
Identity = 88/227 (38.77%), Postives = 129/227 (56.83%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELLV 684
            +AGG AS+F  W   L   + +  +QLPGR +R  E   T++L++VD + KAL+    L  PFA FGHSMGA + +EL+RKL+Q  G++P  L +S C  PH+        + +LP+D F+  L    G P  +    E++DFF+P +RAD+  +E Y+   +   L CP+  LGG +D  A    L  W   T+  F LR F G HFF+    Q+ VLK +S +L+
Sbjct:   29 YAGGGASIFRTWQSGLGQKINICPVQLPGRENRIGEAPFTNLLEVVDSVEKALTPY--LGLPFAFFGHSMGAKIAFELSRKLSQKKGIEPSYLFISGCLVPHIPEPN---PICRLPKDAFIHELYRYSGTPEAVLMNAELMDFFMPLLRADFTLVETYECPKQDGKLMCPICVLGGEDDREASVEKLEAWRTYTSGCFDLRLFPGNHFFIIS-AQSLVLKTISTMLL 249
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: K9X7X8_9NOST (Putative thioesterase involved in non-ribosomal peptide biosynthesis n=1 Tax=Cylindrospermum stagnale PCC 7417 TaxID=56107 RepID=K9X7X8_9NOST)

HSP 1 Score: 163 bits (412), Expect = 3.190e-44
Identity = 94/227 (41.41%), Postives = 137/227 (60.35%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSL-GGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKYLSELL 681
            +AGG  S+F +WP  LP  VE+ A+ LPGR +R  E+ ++++  + + + + L  ++ LDKPFALFGHSMGAL+VYELARKL Q N V P  L VS    P+  V  L P +  LP  EF++ L ++   +P  +   +E+++ FLP +RAD   +E Y  + +  PL CP+V LGG ED+ A    L  W   T   F +  F GGHF+L +  Q P+L+ +S+ L
Sbjct:   28 YAGGGTSIFRRWPQELPSNVELCAIDLPGRENRIGEKPISNLEILTEKLVEVL--LQHLDKPFALFGHSMGALIVYELARKLQQKN-VNPVYLFVSGRPAPN--VLELYPPLHLLPDAEFIEKLTNIYSAIPDAVLKDKELMELFLPVLRADLTLVETYIHS-QVEPLDCPIVALGGLEDNEASHDYLVTWREYTRSSFSVEMFPGGHFYLNENRQ-PLLQLISQTL 247
[Close]
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Match: UPI001ACD7651 (Medium-chain acyl-[acyl-carrier-protein] hydrolase n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001ACD7651)

HSP 1 Score: 162 bits (411), Expect = 5.760e-44
Identity = 88/210 (41.90%), Postives = 120/210 (57.14%), Query Frame = 1 
Query:    4 WAGGSASVFNKWPDSLPDTVEMRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMGALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFVDHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPVVCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFL 633
            +AGG ASVF  WP+  P ++E+ A+QLPGR  R  E   T    +V  +  +L      D+PFA FGHS+GAL+ +ELAR LA+ N   P  L V+    P   V    P++ QLP+ EF+  L +L G PAE+    E+++ FLP +RAD+   E Y     G+PL CP+   GG +D  ++ A+L  W N T Q F LR   G HFFL
Sbjct:   28 YAGGGASVFRDWPNYFPSSIEVCAVQLPGREGRWREPLFTHWEPLVQALVDSLQPYY--DRPFAFFGHSLGALISFELARALARQNKPAPLHLCVAGHAAPQ--VPNTEPAIHQLPKPEFIKKLRALSGTPAEVLQNAELMELFLPVLRADFAVNETYTYT-PGSPLECPISAFGGLQDEMSVPAELEGWRNQTRQAFTLRLLPGDHFFL 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3208.8637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUF1_9PHAE6.970e-8857.45Thioesterase domain-containing protein n=2 Tax=Ect... [more]
A0A838P9F7_9BACT3.260e-4742.92Thioesterase n=1 Tax=Pyrinomonadaceae bacterium Ta... [more]
A0A7W1JCP2_9BACT2.580e-4643.61Thioesterase n=1 Tax=Pyrinomonadaceae bacterium Ta... [more]
A0A7W0JJ68_9BACT7.590e-4643.81Thioesterase n=1 Tax=Acidobacteria bacterium TaxID... [more]
A0A1C4UP34_9ACTN4.040e-4542.92Surfactin synthase thioesterase subunit n=2 Tax=Mi... [more]
A9GQY0_SORC59.980e-4542.48Thioesterase n=1 Tax=Sorangium cellulosum (strain ... [more]
A0A1W1IAP7_9BACT1.250e-4441.74Linear gramicidin dehydrogenase LgrE n=1 Tax=Nitro... [more]
UPI0019E706831.530e-4438.77Thioesterase n=1 Tax=Proteobacteria bacterium TaxI... [more]
K9X7X8_9NOST3.190e-4441.41Putative thioesterase involved in non-ribosomal pe... [more]
UPI001ACD76515.760e-4441.90Medium-chain acyl-[acyl-carrier-protein] hydrolase... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3208contigH-paniculata_contig3208:5943..10662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.8
Seed ortholog evalue2.2e-63
Seed eggNOG ortholog2880.D8LKB7
Preferred nameOLAH
KEGG rclassRC00014,RC00039
KEGG koko:K01071
KEGG ReactionR04014,R08157,R08158
KEGG Pathwayko00061,ko01100,map00061,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016295,GO:0016296,GO:0016297,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0016790,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047381,GO:0051791,GO:0051792,GO:0071704,GO:0072330,GO:1901576
EggNOG free text desc.dodecanoyl-[acyl-carrier-protein] hydrolase activity
EggNOG OGs2RGSQ@2759,COG3208@1
EC3.1.2.21
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons5
Model size1194
Cds size642
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.9329367-UTR-H-paniculata_contig3208:5942..64281622929988.9329367-UTR-H-paniculata_contig3208:5942..6428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3208 5943..6428 -
1691481099.8601015-UTR-H-paniculata_contig3208:5942..64281691481099.8601015-UTR-H-paniculata_contig3208:5942..6428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3208 5943..6428 -
1622929989.0131712-UTR-H-paniculata_contig3208:10596..106621622929989.0131712-UTR-H-paniculata_contig3208:10596..10662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3208 10597..10662 -
1691481099.928056-UTR-H-paniculata_contig3208:10596..106621691481099.928056-UTR-H-paniculata_contig3208:10596..10662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3208 10597..10662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.9465458-CDS-H-paniculata_contig3208:6428..66751622929988.9465458-CDS-H-paniculata_contig3208:6428..6675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 6429..6675 -
1691481099.8793187-CDS-H-paniculata_contig3208:6428..66751691481099.8793187-CDS-H-paniculata_contig3208:6428..6675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 6429..6675 -
1622929988.9618535-CDS-H-paniculata_contig3208:7053..72051622929988.9618535-CDS-H-paniculata_contig3208:7053..7205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 7054..7205 -
1691481099.8884773-CDS-H-paniculata_contig3208:7053..72051691481099.8884773-CDS-H-paniculata_contig3208:7053..7205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 7054..7205 -
1622929988.9729574-CDS-H-paniculata_contig3208:7434..75871622929988.9729574-CDS-H-paniculata_contig3208:7434..7587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 7435..7587 -
1691481099.8992174-CDS-H-paniculata_contig3208:7434..75871691481099.8992174-CDS-H-paniculata_contig3208:7434..7587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 7435..7587 -
1622929988.9851425-CDS-H-paniculata_contig3208:9072..91301622929988.9851425-CDS-H-paniculata_contig3208:9072..9130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 9073..9130 -
1691481099.9089-CDS-H-paniculata_contig3208:9072..91301691481099.9089-CDS-H-paniculata_contig3208:9072..9130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 9073..9130 -
1622929988.9969482-CDS-H-paniculata_contig3208:10564..105961622929988.9969482-CDS-H-paniculata_contig3208:10564..10596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 10565..10596 -
1691481099.9200456-CDS-H-paniculata_contig3208:10564..105961691481099.9200456-CDS-H-paniculata_contig3208:10564..10596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3208 10565..10596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3208.8637.1prot_H-paniculata_contig3208.8637.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3208 6429..10596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3208.8637.1

>prot_H-paniculata_contig3208.8637.1 ID=prot_H-paniculata_contig3208.8637.1|Name=mRNA_H-paniculata_contig3208.8637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
MRALQLPGRMSRSTEECLTSILDMVDGIAKALSTMELLDKPFALFGHSMG
ALVVYELARKLAQDNGVKPFVLIVSACRPPHMSVGGLGPSVSQLPRDEFV
DHLVSLGGMPAELRDQREILDFFLPSIRADYVALECYQPNLEGAPLACPV
VCLGGAEDSAAIRADLAQWANLTTQEFRLRTFEGGHFFLKDQGQAPVLKY
LSELLVSQCHALR*
back to top

mRNA from alignment at H-paniculata_contig3208:5943..10662-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3208.8637.1 ID=mRNA_H-paniculata_contig3208.8637.1|Name=mRNA_H-paniculata_contig3208.8637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4720bp|location=Sequence derived from alignment at H-paniculata_contig3208:5943..10662- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGGGCCGGCGGAAGTGCGAGCGTGTTCAACAAATGGCCGGACTCGTT
GCCCGACACAGTGGAAATGAGAGCACTACAGCTTCCTGGCAGGATGAGGT
AATCATGGACAACTACATTTCGTAGAGGACAAACGAGAAACGGGTGCGAG
TTGAGTGTGGTATGTGAGACGCTACATCGTGTATTTTAATAGTTACAAGT
GCTGTAGCTGGTCGATCAGTCAGTTTTCTGCACCACGTAGTAGAGCTAGG
TAATATATCACGGGTTGGTCCGGTCAGATGTCGCTGCTTTTGCTGCTTGG
GAACAGTTGTTGATGCATCGTGTGGTCAGCTAGTCACACCTTCGCGCCAT
CATCAGGCTTCGTAGGTGGGATATGCAATCGTCACTTTCGTGGTGCAACT
ACATTTTGAGATGGGACGATGACTCACCCCCTCTTAAGTTCCTGAGCGCG
AGCTTTGTTATCTGAGGTTCTGTTTACCATAGCCACAGGGCGTGCAAGTG
GCTGGGTCTAGGGTCCCAAGACTGCCAGGGCTGTGAACGTTAACCTGGGT
TCACGGCGATCATGCGTTGGCCGTAAGTGGTGACGACTCTAGTGTGATAC
AAACCAAACACAATGTAGCTGCATGTTCATTTTTTCGAACATGGTGTCAG
TATCGCTGACTCTCGAGTAGAAATTGCATCGTACTCCGAAAAATTGAATG
GGCTTAGGGAGATGATACGCACATCCGTTGTATAAGTTTTATTGCTTCAG
CAGTTGTGCTCACGTATGGATAGTGCCGCCGAAACTTGGTACTACTATAT
GTAGACAGTACAATCGCTTTGTCGTGTTTTTGGTTAGTCAGTCAACCTGA
TTCAAGGCTTGGGGCGTTTCCGGTCCGGTATTTTTATCTTGAAGTTGGTG
TTTATTGGCTCAGTTATCTGGTTAACGGGAAGCTCCTGCATTTTTTAATT
ACAGAAGCCCCGGAATCTCTCTTGCATCAAGATTGCATGCAGTTAGTGGT
TCGAAACGACTTTCGAATGTAGAAAAATCGCTCAGCCGCCATGACTATCT
CTTGGGTTCTATGGAGCGTTTTCCTTTCGCGCAAATGCGCAGGTTATCCG
GTTATGCGAAAAAGGCTGAGTTTTTGGGCCCTAAACTCCCCGGAATCTCT
CTTGCGTTGTGACAATTTCAAGCCGCTAGTGGTCCGAAAGGACTATGTAG
CATGAGAAATTGCTCAGCCGCTGAGTCCTTTTATTGGGTTATCTGATGGA
CCCTGGTGTCGCCGGATATGCGCCGGTTCGCTGGTTCAGAGGCTCCAATA
AGCGGCCGTCGATCTTCGATTTTGAGGAAAACGCTTTCTCGTCGGTTTAC
CAGTTTTTGTTCGCGCTGGTCACAACGTCTACTACTGTACGTTGTTGTCC
CATTGCCGCGTGCCGTGCAGGCGCGGACCTGGATGTTACGATGTTTGTAC
GGTGCGTCTGGCCCAACGGCCAGTACCGCAATTGTGTATTCTCACTCCGT
CCGACCTCTGTCCATTTTGTTGAATACTGCAGTCGTTCCACGGAGGAGTG
CTTGACGTCAATTCTGGACATGGTCGACGGCATTGCCAAGGTGTTACTAT
ATTCCTACGATAGCGTTTGAGTGTGGCGACCGCGGTGTGAGCATATTGCT
TTGCTATGTTCCAAGATGAATGGAGGCGAGCTTGGTTCATTTCCGCGTTA
ACGTCCGACGAGCTGTGGGAGTATGGAAATTCGTCTGTCACGAAAGTGCT
GAAAGGGTGAAAAATATCCCATTCCTGTAGCAGGCTGACTTAATGACTGA
AAAATGTGTTATTTTCAGGAATACGATGGGTGTGTGTGAAACACATATAT
CACGTCTCTCCACTCGCGATTCTTGACTGCACCTCTACAGAAAGGTACGT
GCTCTACAGACAGGTGCTCGGAGAGTCCAGAGAGTGCAGCACTTGTGCAT
TGAGTGGTTGATCAAGGGAACGTGATCAAAATACGTAGAGCGAATTTGAC
AAACAGGAAAAACAAAATCAGCGCTCCGGTGGTGTGAAAAAAGAAGAGTA
CAAATAGCCCACACAGCGCGGAGCGTCCACACTCCGCTTAGCCCCGCCGT
TATCTAGAAAACTTTACTGATGTCCGGGCCAGTTTGCCACCGGTTTGGGA
GCGTGCTATTGCGGCTGGACCAATAAATGTTGGAGACCATGCTCCATCAG
GCAACGTGGATTGGCACGCAGCTTGCTCTTTACCAAATTCAAGTGTCTAA
CAAGTAGTCTGTGTTGGAATCCATCTTCAGATTGTCGCCACGGCACCCAC
ACGGTAGACGTGAAGGACGTAAACACCCCCAGGCATAGGTGACAAGCTGA
TTGAACGTGCTCTGTGATGTCGCGAGAAATGTTCACTACATGTCACACAA
AGTAAAAGGTTTCAAATAAGGGTTGCCATCCAACTTGCCGATCTCTTTCG
GGGGTTTTCTCTCTCTTTTTTGGAGATTACGAGTTTCGGAAATTTGAATA
TCAACATTAGTCATTTTTGCATACAGTGTTCGTTCCTGATGAGAAAACGT
TTGGCAGATTTTTCAGATATCATTTCAGCGTGTTGCCGCCACGGCACTGA
AAAGGAGAGAACAAAAGACAGGGGGGGGGGTGCAATGTTATCACCGGCTC
TAAGCTAGTTCTGATTTCGGATTTCATCGCCGCCACGGTGCGCGTCGAGC
AGACACTGGCAAGAACAGGGGAGCCGAGGGAAACGACTGATGTCAGGGTC
AGATAACCGATTTCGCAGCTTGTTGTTGAACGTAGCGCTCAAAATGTGAT
GAAGAGTACACGAACGCACGGTCGATAGATGGGATTTCTCTTTTGGATCG
CTCTCAGAAATGTTTTGAACCTTTTTGATTTCGTCATGACTTGATAGGAG
AGGTGAAAATGTCATTTAGCTCGGTTTCACCCCTACTGGACAAGAAAGAC
ATCAATGCTCGCGACGCTTGCCGGTTGTGCTTGTACTCCTGTCGTTAATC
TCACTCCCAATTCTATTCTATCCTGCCATATTGTGTCGTGTCGTGTCGTG
TCGTCTCCATCCTGACCGGGTCAAGGCCCTATCCACGATGGAATTACTCG
ACAAACCATTCGCCCTGTTCGGGCATAGCATGGGTGCTCTCGTCGTGTAC
GAGCTAGCGCGGAAGTTGGCGCAAGACAACGGCGTGAAACCTTTTGTTCT
TATCGTTTCCGCCTGTCGCCCTCCTCATGTGAGTCGAAAATATATTAGGG
CGAGGAGTGAGGGGGGGGGGCTAGGCGAGGTGTGAAAGGAATTGTTTTCG
TTCATGGAAGTAATTGAACTTGGCTCCGTTTTTTTGTGTCGCACGAAATC
GTTTTACTGTACGTCTTTTCGCACCGACCAATTGGCCCGTACTCACTGAG
CTGTCTTACCCGCCTCTGCATGACTACTTTTGGGAATTTTGCTATATTGC
GAGGAAGATGTCGGTGGGAGGGCTAGGTCCGTCCGTAAGCCAGCTGCCGC
GAGACGAATTCGTAGATCATCTTGTAAGTCTTGGAGGGATGCCCGCAGAG
TTGAGGGACCAGCGCGAGATCCTCGACTTCTTCTTGCCCTCGATTCGGGC
TGACTACGTGTGAGATCACTAATGAAGATTGTGTCGTGTATGGTTCACCG
GTTTGGCGTTTATCATGCCTACATTTCTCGTTCGATGGAGCGAAAAGGAA
AAGGGTGGCTTTTGTAGTTGTTCGCTTTATGACGTTACGGCGTGACTTGG
GAGGTCCTCTCACACACACAGTGAGTTGCGGTGAAGAAATGTCCGAGAGG
GGTGTAACAGCTTTTCTGTCATGGACGCCGGTCGGTGCTGTGCACTTTCT
AAGCACAGTAAACGTATTTCTTTTTCTTACGCTCAGCAAACGTAGTCTAT
CACTAAAGCCCATAGGATTAAAATGCTTCAATTTGCTCTGTGCGACCTTG
CTATCCCTTCGGTTATTTTTATTTTGTGTATCTCAAGGGCTCTGGAGTGC
TACCAACCTAACCTGGAGGGCGCCCCCCTGGCATGCCCCGTGGTCTGCTT
GGGTGGAGCGGAGGACAGCGCGGCCATACGCGCTGATTTGGCCCAGTGGG
CAAACCTCACAACTCAAGAGTTCCGATTGCGAACGTTTGAGGGGGGACAC
TTTTTCTTGAAAGATCAAGGGCAAGCGCCCGTTTTGAAGTACTTGAGCGA
GTTGCTGGTCTCCCAGTGTCACGCACTAAGATAGTGTCCTGCACTTGGAT
AGGTTGTTGATGTGGTTAGTTTTCTCCACGGTCGCCGACGCCTCTAATAG
TGTGCACATGTCTCTTTGGTGTTGCGAATCGTGGTGTGGTCTGGATACTA
ATATGATTCCCTTGCGTCGGGTTCTTGAGACCTCAGAAAATAAGCTCTAC
CGTGAGCCCAGCCAAGTTGGAGAATTTTCTTATAATTTTCAGTGTTCAGT
ATACGGTCGCAGTTACTTTGGACACTGGATTTTGCCACGCCTGAGCTTCG
GTTGTGTGTCGTGCCCACTGCGCTATCTTGATCCATTCTATCGTTCGTTA
TATAGTAGACACTAATAGTAGATTCAGCAAGTGGTAGATCCATCGCACAA
TCCTGGGCTGAGCGAAGAACTGCGTTAGAGCTCAACTACACCATGCTCAA
TAAATATGGCCACTTCCAAGCGCTGTGGGGATAGTTATCGCAAAATCCAA
GTTTTCAGAAGAGTTAAAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3208:5943..10662-

>mRNA_H-paniculata_contig3208.8637.1 ID=mRNA_H-paniculata_contig3208.8637.1|Name=mRNA_H-paniculata_contig3208.8637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig3208:5943..10662- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCACTACAGCTTCCTGGCAGGATGAGATGAGAGCACTACAGCTT
CCTGGCAGGATGAGTCGTTCCACGGAGGAGTGCTTGACGTCAATTCTGGA
CATGGTCGACGGCATTGCCAAGTCGTTCCACGGAGGAGTGCTTGACGTCA
ATTCTGGACATGGTCGACGGCATTGCCAAGGCCCTATCCACGATGGAATT
ACTCGACAAACCATTCGCCCTGTTCGGGCATAGCATGGGTGCTCTCGTCG
TGTACGAGCTAGCGCGGAAGTTGGCGCAAGACAACGGCGTGAAACCTTTT
GTTCTTATCGTTTCCGCCTGTCGCCCTCCTCATGCCCTATCCACGATGGA
ATTACTCGACAAACCATTCGCCCTGTTCGGGCATAGCATGGGTGCTCTCG
TCGTGTACGAGCTAGCGCGGAAGTTGGCGCAAGACAACGGCGTGAAACCT
TTTGTTCTTATCGTTTCCGCCTGTCGCCCTCCTCATATGTCGGTGGGAGG
GCTAGGTCCGTCCGTAAGCCAGCTGCCGCGAGACGAATTCGTAGATCATC
TTGTAAGTCTTGGAGGGATGCCCGCAGAGTTGAGGGACCAGCGCGAGATC
CTCGACTTCTTCTTGCCCTCGATTCGGGCTGACTACGTATGTCGGTGGGA
GGGCTAGGTCCGTCCGTAAGCCAGCTGCCGCGAGACGAATTCGTAGATCA
TCTTGTAAGTCTTGGAGGGATGCCCGCAGAGTTGAGGGACCAGCGCGAGA
TCCTCGACTTCTTCTTGCCCTCGATTCGGGCTGACTACGTGGCTCTGGAG
TGCTACCAACCTAACCTGGAGGGCGCCCCCCTGGCATGCCCCGTGGTCTG
CTTGGGTGGAGCGGAGGACAGCGCGGCCATACGCGCTGATTTGGCCCAGT
GGGCAAACCTCACAACTCAAGAGTTCCGATTGCGAACGTTTGAGGGGGGA
CACTTTTTCTTGAAAGATCAAGGGCAAGCGCCCGTTTTGAAGTACTTGAG
CGAGTTGCTGGTCTCCCAGTGTCACGCACTAAGATAGGGCTCTGGAGTGC
TACCAACCTAACCTGGAGGGCGCCCCCCTGGCATGCCCCGTGGTCTGCTT
GGGTGGAGCGGAGGACAGCGCGGCCATACGCGCTGATTTGGCCCAGTGGG
CAAACCTCACAACTCAAGAGTTCCGATTGCGAACGTTTGAGGGGGGACAC
TTTTTCTTGAAAGATCAAGGGCAAGCGCCCGTTTTGAAGTACTTGAGCGA
GTTGCTGGTCTCCCAGTGTCACGCACTAAGATAG
back to top