mRNA_H-paniculata_contig11335.862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11335.862.1
Unique NamemRNA_H-paniculata_contig11335.862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11335.862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11335contigH-paniculata_contig11335:3362..4606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size871
Cds size870
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928841.7532656-CDS-H-paniculata_contig11335:3361..37061622928841.7532656-CDS-H-paniculata_contig11335:3361..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11335 3362..3706 +
1691480641.0115602-CDS-H-paniculata_contig11335:3361..37061691480641.0115602-CDS-H-paniculata_contig11335:3361..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11335 3362..3706 +
1622928841.7640345-CDS-H-paniculata_contig11335:4080..46051622928841.7640345-CDS-H-paniculata_contig11335:4080..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11335 4081..4605 +
1691480641.0215542-CDS-H-paniculata_contig11335:4080..46051691480641.0215542-CDS-H-paniculata_contig11335:4080..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11335 4081..4605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11335.862.1prot_H-paniculata_contig11335.862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11335 3362..4605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11335.862.1

>prot_H-paniculata_contig11335.862.1 ID=prot_H-paniculata_contig11335.862.1|Name=mRNA_H-paniculata_contig11335.862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=290bp
QYRTQLETEQIVPEVPSTRWAVYLMMISFIGMVFLINQDGMMAHIAWMVE
WVKPRMLTCWGWATSFCGFTLSCWDDARMDFWPHELGVMVVFCFTGTWLL
WECLVWQLSASTSPEHELCQGLLPSGRPNGPRSCIPDEVYLPIMVVVVNG
VMGVVAMTLRIILQSLWDITAGGLSATYSAVEVARDPATAIRIQQEWRRF
VAALVWVAAALVCVTLSPACASRVLVGCVKTLRRSLKATLRRQPYQPQCG
GGGKRWQRARSRDVGDLTMLSPVQRGEDVALLHWKFPRLW
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mRNA from alignment at H-paniculata_contig11335:3362..4606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11335.862.1 ID=mRNA_H-paniculata_contig11335.862.1|Name=mRNA_H-paniculata_contig11335.862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1245bp|location=Sequence derived from alignment at H-paniculata_contig11335:3362..4606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACCGCACGCAGCTGGAGACCGAGCAGATCGTACCTGAGGTGCCATC
GACCCGCTGGGCGGTATATCTCATGATGATCTCATTCATCGGTATGGTCT
TTCTGATCAATCAGGATGGGATGATGGCGCATATCGCTTGGATGGTCGAG
TGGGTCAAGCCGCGTATGCTGACCTGCTGGGGGTGGGCTACTTCATTCTG
CGGTTTTACCTTGAGCTGCTGGGATGATGCTCGAATGGATTTTTGGCCTC
ATGAGTTGGGAGTCATGGTTGTATTTTGTTTCACTGGGACTTGGTTATTG
TGGGAATGCCTTGTTTGGCAACTCAGCGCCTCCACGTCACCTGAGGTGCG
TCATTAGTGTTGTTCTCGGCTCTTTTCTTGAAGAGGGATGTTGGTTTGTT
GGTTCGTCCCCACTCTCTTTTAGTGGGTGCTACGGTTCGTCGAGAGCAAA
CTCAGGACGGCGGTCAGAGCATGCCGGTTGGTTGTCATGAAAGTACAGTA
GTGAGTGTTTAGTGTGTCGCGTCAGTCGAGCAACCTGTGTGAAGAGGGAA
TGAAGAGGCGTCGATCGCCCCCCATGAAGTAGCATGTGTGTCCTTCACAT
GTAATATTGGGGAAGTCGCGTGGTGATTGATTGCGCACGTTACAGTGCTT
ACGTGATATATAATCTTGTCCTCTACACTGTTCTCTCCCGACCGCTCTAT
GATCTTGTTCCTGTTGCAGCATGAGTTGTGTCAGGGGCTGCTACCGAGCG
GTCGCCCTAACGGTCCTCGATCTTGTATTCCTGATGAGGTCTACCTTCCC
ATAATGGTGGTTGTGGTTAACGGTGTGATGGGAGTGGTTGCAATGACTCT
GAGAATAATACTACAATCGTTGTGGGACATAACGGCGGGAGGGTTGTCCG
CTACGTACTCAGCAGTCGAAGTCGCGCGCGATCCAGCGACGGCGATCAGG
ATCCAGCAAGAGTGGCGTCGCTTCGTTGCTGCTTTGGTATGGGTTGCTGC
TGCTTTGGTATGTGTCACGTTATCTCCGGCCTGTGCCTCCCGCGTCTTAG
TGGGGTGTGTGAAGACGCTGAGACGGTCGCTTAAAGCTACGCTGCGGCGG
CAACCATACCAACCTCAGTGTGGCGGCGGGGGAAAGAGATGGCAGAGAGC
GAGAAGCCGAGATGTCGGCGACTTGACGATGCTATCTCCTGTTCAGCGGG
GTGAGGACGTAGCGTTGTTGCACTGGAAGTTCCCACGATTATGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11335:3362..4606+

>mRNA_H-paniculata_contig11335.862.1 ID=mRNA_H-paniculata_contig11335.862.1|Name=mRNA_H-paniculata_contig11335.862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig11335:3362..4606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACCGCACGCAGCTGGAGACCGAGCAGATCGTACCTGAGGTGCCATC
GACCCGCTGGGCGGTATATCTCATGATGATCTCATTCATCGGTATGGTCT
TTCTGATCAATCAGGATGGGATGATGGCGCATATCGCTTGGATGGTCGAG
TGGGTCAAGCCGCGTATGCTGACCTGCTGGGGGTGGGCTACTTCATTCTG
CGGTTTTACCTTGAGCTGCTGGGATGATGCTCGAATGGATTTTTGGCCTC
ATGAGTTGGGAGTCATGGTTGTATTTTGTTTCACTGGGACTTGGTTATTG
TGGGAATGCCTTGTTTGGCAACTCAGCGCCTCCACGTCACCTGAGCAGTA
CCGCACGCAGCTGGAGACCGAGCAGATCGTACCTGAGGTGCCATCGACCC
GCTGGGCGGTATATCTCATGATGATCTCATTCATCGGTATGGTCTTTCTG
ATCAATCAGGATGGGATGATGGCGCATATCGCTTGGATGGTCGAGTGGGT
CAAGCCGCGTATGCTGACCTGCTGGGGGTGGGCTACTTCATTCTGCGGTT
TTACCTTGAGCTGCTGGGATGATGCTCGAATGGATTTTTGGCCTCATGAG
TTGGGAGTCATGGTTGTATTTTGTTTCACTGGGACTTGGTTATTGTGGGA
ATGCCTTGTTTGGCAACTCAGCGCCTCCACGTCACCTGAGCATGAGTTGT
GTCAGGGGCTGCTACCGAGCGGTCGCCCTAACGGTCCTCGATCTTGTATT
CCTGATGAGGTCTACCTTCCCATAATGGTGGTTGTGGTTAACGGTGTGAT
GGGAGTGGTTGCAATGACTCTGAGAATAATACTACAATCGTTGTGGGACA
TAACGGCGGGAGGGTTGTCCGCTACGTACTCAGCAGTCGAAGTCGCGCGC
GATCCAGCGACGGCGATCAGGATCCAGCAAGAGTGGCGTCGCTTCGTTGC
TGCTTTGGTATGGGTTGCTGCTGCTTTGGTATGTGTCACGTTATCTCCGG
CCTGTGCCTCCCGCGTCTTAGTGGGGTGTGTGAAGACGCTGAGACGGTCG
CTTAAAGCTACGCTGCGGCGGCAACCATACCAACCTCAGTGTGGCGGCGG
GGGAAAGAGATGGCAGAGAGCGAGAAGCCGAGATGTCGGCGACTTGACGA
TGCTATCTCCTGTTCAGCGGGGTGAGGACGTAGCGTTGTTGCACTGGAAG
TTCCCACGATTATGGCATGAGTTGTGTCAGGGGCTGCTACCGAGCGGTCG
CCCTAACGGTCCTCGATCTTGTATTCCTGATGAGGTCTACCTTCCCATAA
TGGTGGTTGTGGTTAACGGTGTGATGGGAGTGGTTGCAATGACTCTGAGA
ATAATACTACAATCGTTGTGGGACATAACGGCGGGAGGGTTGTCCGCTAC
GTACTCAGCAGTCGAAGTCGCGCGCGATCCAGCGACGGCGATCAGGATCC
AGCAAGAGTGGCGTCGCTTCGTTGCTGCTTTGGTATGGGTTGCTGCTGCT
TTGGTATGTGTCACGTTATCTCCGGCCTGTGCCTCCCGCGTCTTAGTGGG
GTGTGTGAAGACGCTGAGACGGTCGCTTAAAGCTACGCTGCGGCGGCAAC
CATACCAACCTCAGTGTGGCGGCGGGGGAAAGAGATGGCAGAGAGCGAGA
AGCCGAGATGTCGGCGACTTGACGATGCTATCTCCTGTTCAGCGGGGTGA
GGACGTAGCGTTGTTGCACTGGAAGTTCCCACGATTATGG
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