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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_002920.1 |
| Exons | 2 |
| Model size | 2592 |
| Cds size | 2232 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32.8611.1 >prot_H-paniculata_contig32.8611.1 ID=prot_H-paniculata_contig32.8611.1|Name=mRNA_H-paniculata_contig32.8611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=744bp
MQDNQQQQGRQYQIKIESSGSGIGGSDRIPRIPRDQSTSAVAACPVNSNP
SPIRACVAELRGATGMTVGLPPLPPVVEFSAAYPDERGDAKKRSLGEKTP
ANDTMGGLPVVDQKNAASIDCNPLILSTSVVHARSDDASSAAMPELTVAV
ATEALAKGTFPVKEEQGHLEIQLQQFVSQKLATGDLDEAGMCALDALAKL
KKGPSSKKELALENRLQQFVSQKLATGDLDKAGMCALDALAKMKVVQPTA
HVSATIGTGKKTSSREQKGHHSTPPGVRDVPKFSGKDRSVINLKQTLTGF
AQCVNVGLNRPGITTEQINTALLRDVHLVLEGPALEWFRLLMKGRVQWDA
TPPPDADTDDVSAVPSPSTETEKVVPPTTWKEVCNSLEDQFVPAEGISRT
CAALLSIRQAPGESIRTYVGRQMGLNHQLSRLMERHGSGVAVWEVLQMGL
FEKGLTPHLQRAQHAEPACNSFTECVARAEANDAALSASRTKAIEAAAAA
DNGKDACAVKAEPTAGKRRGESRTRSDDTASKRELPADSNSSANNGPSIS
DDIVSKGKLPAKSNSSTNEPVMASEKTGLQQAVERASSRAPSYDKSNERE
REDEPKSTQHAAPLPSKRKREESSPRSCRGSRRSSSIARAQQNRPNRRSR
NEGNEQVVPCEMTGCRNPHNHTTDLCFWHPRHGVKNRKQYNERRSKQKTE
RGTREWGSQQKENTDADHYHGIQMDPTIQHIGPWQGPSYEAPM* back to topmRNA from alignment at H-paniculata_contig32:41363..45083+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig32.8611.1 ID=mRNA_H-paniculata_contig32.8611.1|Name=mRNA_H-paniculata_contig32.8611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3721bp|location=Sequence derived from alignment at H-paniculata_contig32:41363..45083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTACAGCCAAGTCTCCGCGAGGCATTGTGTGCTCCCCGGTCACTCTG
CCATAAGAGGACCATGCAAGACAACCAGCAACAGCAAGGCCGACAGTATC
AGATAAAAATAGAGTCCAGTGGTAGTGGCATCGGTGGTAGTGACCGTATC
CCTCGCATCCCGCGAGATCAGTCCACATCCGCGGTTGCAGCCTGTCCTGT
GAACAGCAACCCAAGCCCCATCCGCGCTTGCGTCGCCGAACTCAGAGGTG
CGACTGGGATGACGGTCGGCCTACCACCTCTACCGCCAGTGGTTGAATTT
TCAGCTGCTTACCCGGATGAAAGGGGCGATGCCAAGAAAAGATCCTTGGG
AGAAAAGACACCTGCGAACGATACTATGGGAGGTTTGCCTGTCGTCGACC
AGAAGAATGCAGCCTCCATCGACTGTAATCCTCTTATCCTATCGACCTCA
GTGGTACATGCGCGTTCTGATGATGCATCATCAGCTGCAATGCCCGAGCT
GACGGTAGCAGTCGCAACAGAGGCGTTGGCCAAGGGGACTTTCCCCGTAA
AGGAGGAACAAGGCCACCTTGAAATACAACTTCAGCAGTTCGTCTCGCAG
AAGCTCGCCACCGGCGACCTTGATGAAGCCGGCATGTGTGCACTCGATGC
GCTGGCGAAATTGAAGAAAGGTCCCTCCTCAAAGAAGGAGTTGGCCCTTG
AAAACCGACTTCAGCAATTCGTTTCACAGAAGCTCGCGACCGGTGACCTT
GACAAGGCAGGCATGTGTGCACTCGATGCTCTGGCGAAGATGAAAGTGGT
CCAGCCTACCGCCCACGTGTCAGCTACAATCGGAACAGGGAAAAAAACGT
CGTCCCGAGAGCAAAAAGGGCATCATAGTACGCCTCCTGGAGTCCGAGAC
GTCCCGAAGTTCAGCGGCAAAGACCGCTCTGTTATAAATCTCAAACAGAC
ACTGACTGGCTTCGCCCAGTGCGTAAACGTGGGCTTGAACCGTCCAGGCA
TCACCACAGAGCAGATCAACACGGCTCTTTTGCGGGACGTCCACCTAGTG
TTGGAGGGTCCTGCTCTGGAGTGGTTTCGTCTGCTGATGAAGGGGCGAGT
CCAATGGGACGCCACCCCCCCGCCGGACGCCGACACCGATGATGTGTCAG
CAGTCCCATCACCGTCAACCGAGACGGAAAAAGTTGTGCCGCCCACGACT
TGGAAGGAAGTGTGCAACTCCCTGGAAGACCAATTTGTGCCGGCGGAAGG
TATCTCCCGCACTTGCGCCGCCTTGCTATCGATTCGCCAAGCCCCAGGAG
AGTCCATCCGGACATACGTCGGACGCCAGATGGGCTTGAACCACCAACTG
AGTCGGTTGATGGAACGCCACGGCAGTGGAGTCGCGGTGTGGGAGGTGCT
TCAGATGGGACTCTTCGAAAAAGGGCTCACACCTCACTTACAACGGGCGC
AGCATGCCGAGCCTGCGTGCAACAGTTTTACTGAGTGTGTCGCCCGCGCC
GAAGCGAATGATGCTGCTTTGTCGGCGAGCCGGACCAAAGCTATCGAAGC
CGCTGCTGCTGCTGACAACGGTAAAGACGCGTGTGCCGTCAAGGCCGAGC
CGACAGCCGGTAAACGTCGTGGCGAATCTCGGACGAGGAGTGATGATACC
GCCTCAAAGAGGGAGCTGCCCGCGGATTCCAATTCAAGTGCTAACAATGG
TCCGTCGATCAGTGATGATATCGTCTCAAAGGGGAAGTTGCCCGCGAAGT
CCAATTCAAGCACCAATGAGCCGGTTATGGCATCTGAAAAAACTGGGTTG
CAACAAGCGGTCGAAAGAGCGTCTTCACGCGCCCCCTCGTATGATAAGTC
CAATGAGCGAGAACGTGAAGATGAACCGAAGTCGACACAACATGCCGCTC
CACTACCGTCCAAACGAAAGCGAGAGGAATCGAGTCCGCGCAGCTGTCGC
GGCTCTCGCCGTAGTAGCAGTATCGCTAGAGCTCAGCAGAATCGTCCCAA
TCGTCGCTCCCGAAACGAAGGCAATGAACAGGTCGTTCCGTGCGAGATGA
CTGGTTGTAGGAACCCCCATAACCACACAACGGATCTTTGCTTCTGGCAC
CCTCGGCATGGAGTCAAAAACCGCAAGCAATACAACGAGCGGCGTAGCAA
GCAGAAAACGGAAAGGGGCACCAGGGAATGGGGATCCCAGCAGAAAGAGA
ACACAGACGCCGACCACTACCATGGGATCCAAATGTAAGTGAATGCTGAA
AACAACTGGTTTGGCTTCACAGATGGATTTAACACTTGACCAGAAGCAGA
ACCGGTTCGCAGTAGGATCCTGTCATAGTTTTTATTCGAGCAAACGGTGC
GCGGTCAGTTCTGCCTGAGAGGCTGTAGCAGAATCACTGTTTTTTGTTTG
GTCCGGTTATGTGTCTCACGGAAGTTGCCCATTATGAGGAAGTTCACCCT
GAATCGTCAACAAATCGTCCTAGAACCGGCAGCAAAAAAAGAAAAGAACT
CACTTCGTGAAAATTATACATGCCTTACAAGTGTGGCCGAAACTAGGACC
GGTTCGCGGTCGAGCTCTGGTAGATTCACGCCGTCGGGCGATCGATTCCG
TCAGATTTCTCTGCTCACATCAAAAGCCCTGCCGAAAGTGGAACGTGTGT
TGAAGCCATCAGACCAACACATGCGTACTAACGTGATGCCTCAGTAGGAA
TCCGAGCACTTCTCGAGTGTATAGACTCCTGCGGGGAATTGCGATAATCC
TCGGGAACATGTAGCGTTTCCTGAGAATCTAGACCGAAGATATGGTTCAC
CTGCGGCTTGCCCAAGGTGCTGTATTTCTGCTAGAGCGGGTGAGCGAAGC
ATCAGCCCGTCTAATAAATTCATGTAATCAGATGTAATCCACGTGGCGGA
AGCACCTCAGCGACCCTGGTTTGGCGATTTTTATACCAACCTCTGCACAA
GAAAGGCAGTCTCGCATCGTTTCCCGTCAATTACTCACATTTTCTGACAC
TTGTGATGGATATCTGGGTTTGGACTCCCCTCTTTGTGTTCAGACAAATC
TTGAAGTATGGTACATCAGAGAGGCGGGAGATCCACCCCCCTTCAACACT
TGGCGACGTCTGTCCCCCGTAGTTCGTGCCCAGTTGTCATGGGTTGTGCA
CACTTCCCTTGGAACCAACCACCTGACCGCTCTTTTCCCGGCAGCATCGA
GAAACCACTGTAGGCGATAACTCAAACTCTCTGTTATTGCTTGCCTTAAT
TTGCAGAGCCATGATGACCCAATATGCGAATACTCTCCTGACCCACTTAC
TGTCCTTATTTTCGACAGTTGTGTGCCACCAACTCCTTTCCTCCAATGCC
ACTCTGTACGCAGGGACCCTACTATACAGCATATAGGGCCGTGGCAAGGC
CCCAGCTACGAAGCCCCCATGTAAAGCTAACTGTGTTTATTGCGGAGGAT
GGGAGGTACTCTTGATCACGTGTGCTTGCTGTCGGCGATCCAAGGAACGG
CCGTCCATAAATTCTGTTCCAGTCGGGTTCTGTGCTTAAAGGATTGTGCG
GGAATAGAGTAAGTAGCGTGAATTGTATTTAAGCACATGTGGAGGATAGT
ATGACAGCAAGATCGAGCGAGATCGTGTGTGCGGGGGCTGGGGATGATGA
GACACCCATGATGTACGAACGAATCTCGCCACTGGCCGACAGTATTGAAG
AAACCTCTCCAGGGCCGGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig32:41363..45083+ >mRNA_H-paniculata_contig32.8611.1 ID=mRNA_H-paniculata_contig32.8611.1|Name=mRNA_H-paniculata_contig32.8611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4464bp|location=Sequence derived from alignment at H-paniculata_contig32:41363..45083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGACAACCAGCAACAGCAAGGCCGACAGTATCAGATAAAAATAGA
GTCCAGTGGTAGTGGCATCGGTGGTAGTGACCGTATCCCTCGCATCCCGC
GAGATCAGTCCACATCCGCGGTTGCAGCCTGTCCTGTGAACAGCAACCCA
AGCCCCATCCGCGCTTGCGTCGCCGAACTCAGAGGTGCGACTGGGATGAC
GGTCGGCCTACCACCTCTACCGCCAGTGGTTGAATTTTCAGCTGCTTACC
CGGATGAAAGGGGCGATGCCAAGAAAAGATCCTTGGGAGAAAAGACACCT
GCGAACGATACTATGGGAGGTTTGCCTGTCGTCGACCAGAAGAATGCAGC
CTCCATCGACTGTAATCCTCTTATCCTATCGACCTCAGTGGTACATGCGC
GTTCTGATGATGCATCATCAGCTGCAATGCCCGAGCTGACGGTAGCAGTC
GCAACAGAGGCGTTGGCCAAGGGGACTTTCCCCGTAAAGGAGGAACAAGG
CCACCTTGAAATACAACTTCAGCAGTTCGTCTCGCAGAAGCTCGCCACCG
GCGACCTTGATGAAGCCGGCATGTGTGCACTCGATGCGCTGGCGAAATTG
AAGAAAGGTCCCTCCTCAAAGAAGGAGTTGGCCCTTGAAAACCGACTTCA
GCAATTCGTTTCACAGAAGCTCGCGACCGGTGACCTTGACAAGGCAGGCA
TGTGTGCACTCGATGCTCTGGCGAAGATGAAAGTGGTCCAGCCTACCGCC
CACGTGTCAGCTACAATCGGAACAGGGAAAAAAACGTCGTCCCGAGAGCA
AAAAGGGCATCATAGTACGCCTCCTGGAGTCCGAGACGTCCCGAAGTTCA
GCGGCAAAGACCGCTCTGTTATAAATCTCAAACAGACACTGACTGGCTTC
GCCCAGTGCGTAAACGTGGGCTTGAACCGTCCAGGCATCACCACAGAGCA
GATCAACACGGCTCTTTTGCGGGACGTCCACCTAGTGTTGGAGGGTCCTG
CTCTGGAGTGGTTTCGTCTGCTGATGAAGGGGCGAGTCCAATGGGACGCC
ACCCCCCCGCCGGACGCCGACACCGATGATGTGTCAGCAGTCCCATCACC
GTCAACCGAGACGGAAAAAGTTGTGCCGCCCACGACTTGGAAGGAAGTGT
GCAACTCCCTGGAAGACCAATTTGTGCCGGCGGAAGGTATCTCCCGCACT
TGCGCCGCCTTGCTATCGATTCGCCAAGCCCCAGGAGAGTCCATCCGGAC
ATACGTCGGACGCCAGATGGGCTTGAACCACCAACTGAGTCGGTTGATGG
AACGCCACGGCAGTGGAGTCGCGGTGTGGGAGGTGCTTCAGATGGGACTC
TTCGAAAAAGGGCTCACACCTCACTTACAACGGGCGCAGCATGCCGAGCC
TGCGTGCAACAGTTTTACTGAGTGTGTCGCCCGCGCCGAAGCGAATGATG
CTGCTTTGTCGGCGAGCCGGACCAAAGCTATCGAAGCCGCTGCTGCTGCT
GACAACGGTAAAGACGCGTGTGCCGTCAAGGCCGAGCCGACAGCCGGTAA
ACGTCGTGGCGAATCTCGGACGAGGAGTGATGATACCGCCTCAAAGAGGG
AGCTGCCCGCGGATTCCAATTCAAGTGCTAACAATGGTCCGTCGATCAGT
GATGATATCGTCTCAAAGGGGAAGTTGCCCGCGAAGTCCAATTCAAGCAC
CAATGAGCCGGTTATGGCATCTGAAAAAACTGGGTTGCAACAAGCGGTCG
AAAGAGCGTCTTCACGCGCCCCCTCGTATGATAAGTCCAATGAGCGAGAA
CGTGAAGATGAACCGAAGTCGACACAACATGCCGCTCCACTACCGTCCAA
ACGAAAGCGAGAGGAATCGAGTCCGCGCAGCTGTCGCGGCTCTCGCCGTA
GTAGCAGTATCGCTAGAGCTCAGCAGAATCGTCCCAATCGTCGCTCCCGA
AACGAAGGCAATGAACAGGTCGTTCCGTGCGAGATGACTGGTTGTAGGAA
CCCCCATAACCACACAACGGATCTTTGCTTCTGGCACCCTCGGCATGGAG
TCAAAAACCGCAAGCAATACAACGAGCGGCGTAGCAAGCAGAAAACGGAA
AGGGGCACCAGGGAATGGGGATCCCAGCAGAAAGAGAACACAGACGCCGA
CCACTACCATGGGATCCAAATATGCAAGACAACCAGCAACAGCAAGGCCG
ACAGTATCAGATAAAAATAGAGTCCAGTGGTAGTGGCATCGGTGGTAGTG
ACCGTATCCCTCGCATCCCGCGAGATCAGTCCACATCCGCGGTTGCAGCC
TGTCCTGTGAACAGCAACCCAAGCCCCATCCGCGCTTGCGTCGCCGAACT
CAGAGGTGCGACTGGGATGACGGTCGGCCTACCACCTCTACCGCCAGTGG
TTGAATTTTCAGCTGCTTACCCGGATGAAAGGGGCGATGCCAAGAAAAGA
TCCTTGGGAGAAAAGACACCTGCGAACGATACTATGGGAGGTTTGCCTGT
CGTCGACCAGAAGAATGCAGCCTCCATCGACTGTAATCCTCTTATCCTAT
CGACCTCAGTGGTACATGCGCGTTCTGATGATGCATCATCAGCTGCAATG
CCCGAGCTGACGGTAGCAGTCGCAACAGAGGCGTTGGCCAAGGGGACTTT
CCCCGTAAAGGAGGAACAAGGCCACCTTGAAATACAACTTCAGCAGTTCG
TCTCGCAGAAGCTCGCCACCGGCGACCTTGATGAAGCCGGCATGTGTGCA
CTCGATGCGCTGGCGAAATTGAAGAAAGGTCCCTCCTCAAAGAAGGAGTT
GGCCCTTGAAAACCGACTTCAGCAATTCGTTTCACAGAAGCTCGCGACCG
GTGACCTTGACAAGGCAGGCATGTGTGCACTCGATGCTCTGGCGAAGATG
AAAGTGGTCCAGCCTACCGCCCACGTGTCAGCTACAATCGGAACAGGGAA
AAAAACGTCGTCCCGAGAGCAAAAAGGGCATCATAGTACGCCTCCTGGAG
TCCGAGACGTCCCGAAGTTCAGCGGCAAAGACCGCTCTGTTATAAATCTC
AAACAGACACTGACTGGCTTCGCCCAGTGCGTAAACGTGGGCTTGAACCG
TCCAGGCATCACCACAGAGCAGATCAACACGGCTCTTTTGCGGGACGTCC
ACCTAGTGTTGGAGGGTCCTGCTCTGGAGTGGTTTCGTCTGCTGATGAAG
GGGCGAGTCCAATGGGACGCCACCCCCCCGCCGGACGCCGACACCGATGA
TGTGTCAGCAGTCCCATCACCGTCAACCGAGACGGAAAAAGTTGTGCCGC
CCACGACTTGGAAGGAAGTGTGCAACTCCCTGGAAGACCAATTTGTGCCG
GCGGAAGGTATCTCCCGCACTTGCGCCGCCTTGCTATCGATTCGCCAAGC
CCCAGGAGAGTCCATCCGGACATACGTCGGACGCCAGATGGGCTTGAACC
ACCAACTGAGTCGGTTGATGGAACGCCACGGCAGTGGAGTCGCGGTGTGG
GAGGTGCTTCAGATGGGACTCTTCGAAAAAGGGCTCACACCTCACTTACA
ACGGGCGCAGCATGCCGAGCCTGCGTGCAACAGTTTTACTGAGTGTGTCG
CCCGCGCCGAAGCGAATGATGCTGCTTTGTCGGCGAGCCGGACCAAAGCT
ATCGAAGCCGCTGCTGCTGCTGACAACGGTAAAGACGCGTGTGCCGTCAA
GGCCGAGCCGACAGCCGGTAAACGTCGTGGCGAATCTCGGACGAGGAGTG
ATGATACCGCCTCAAAGAGGGAGCTGCCCGCGGATTCCAATTCAAGTGCT
AACAATGGTCCGTCGATCAGTGATGATATCGTCTCAAAGGGGAAGTTGCC
CGCGAAGTCCAATTCAAGCACCAATGAGCCGGTTATGGCATCTGAAAAAA
CTGGGTTGCAACAAGCGGTCGAAAGAGCGTCTTCACGCGCCCCCTCGTAT
GATAAGTCCAATGAGCGAGAACGTGAAGATGAACCGAAGTCGACACAACA
TGCCGCTCCACTACCGTCCAAACGAAAGCGAGAGGAATCGAGTCCGCGCA
GCTGTCGCGGCTCTCGCCGTAGTAGCAGTATCGCTAGAGCTCAGCAGAAT
CGTCCCAATCGTCGCTCCCGAAACGAAGGCAATGAACAGGTCGTTCCGTG
CGAGATGACTGGTTGTAGGAACCCCCATAACCACACAACGGATCTTTGCT
TCTGGCACCCTCGGCATGGAGTCAAAAACCGCAAGCAATACAACGAGCGG
CGTAGCAAGCAGAAAACGGAAAGGGGCACCAGGGAATGGGGATCCCAGCA
GAAAGAGAACACAGACGCCGACCACTACCATGGGATCCAAATGGACCCTA
CTATACAGCATATAGGGCCGTGGCAAGGCCCCAGCTACGAAGCCCCCATG
TAAGGACCCTACTATACAGCATATAGGGCCGTGGCAAGGCCCCAGCTACG
AAGCCCCCATGTAA back to top
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