mRNA_H-paniculata_contig3199.8606.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3199.8606.1
Unique NamemRNA_H-paniculata_contig3199.8606.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3199.8606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3199contigH-paniculata_contig3199:2859..4272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size862
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3199.8606.1prot_H-paniculata_contig3199.8606.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3199 2953..4272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.7086647-UTR-H-paniculata_contig3199:2858..29521622929984.7086647-UTR-H-paniculata_contig3199:2858..2952Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3199 2859..2952 +
1691481098.1467707-UTR-H-paniculata_contig3199:2858..29521691481098.1467707-UTR-H-paniculata_contig3199:2858..2952Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3199 2859..2952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.7237194-CDS-H-paniculata_contig3199:2952..32411622929984.7237194-CDS-H-paniculata_contig3199:2952..3241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3199 2953..3241 +
1691481098.1545494-CDS-H-paniculata_contig3199:2952..32411691481098.1545494-CDS-H-paniculata_contig3199:2952..3241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3199 2953..3241 +
1622929984.7391698-CDS-H-paniculata_contig3199:3793..42721622929984.7391698-CDS-H-paniculata_contig3199:3793..4272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3199 3794..4272 +
1691481098.1620715-CDS-H-paniculata_contig3199:3793..42721691481098.1620715-CDS-H-paniculata_contig3199:3793..4272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3199 3794..4272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3199.8606.1

>prot_H-paniculata_contig3199.8606.1 ID=prot_H-paniculata_contig3199.8606.1|Name=mRNA_H-paniculata_contig3199.8606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=256bp
MSSSIGTPTDGVDVEVDVGEDDVDVDVDVMEDFPDGTTEEGSSLFAAAGA
EEQSLQQGPATQPPPSRKPSALLNTSIREKVVPTGCVGKARLKDARAKTS
AGGEAAGGTGGGGGGGGEGVRSPCAANIAVDGMVTVDDAATADELVTDDD
DSINVENDTVAVGNNSNNNEGSTIVTPPARAAAVPPSSTVAAAAGEGTTM
ATTTRADGGTGASRAQSPVGGLVSSEAGASAAMAGVPAVGVSTAALSGIS
FGWGG*
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mRNA from alignment at H-paniculata_contig3199:2859..4272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3199.8606.1 ID=mRNA_H-paniculata_contig3199.8606.1|Name=mRNA_H-paniculata_contig3199.8606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1414bp|location=Sequence derived from alignment at H-paniculata_contig3199:2859..4272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAAATTAAATTTCTTCAGGGGCAGGGTCATACTCCAGTACAAGAATTTT
TAAACAGGAAGGGGAGGAAGGAGGGGAGGTTGCAGAATTACGTGATGTCA
TCTTCCATAGGCACTCCTACGGACGGTGTGGACGTTGAAGTTGACGTTGG
AGAGGACGATGTTGACGTCGACGTTGACGTGATGGAGGACTTCCCCGATG
GAACTACCGAAGAAGGTTCTTCGCTCTTCGCGGCCGCGGGAGCAGAAGAG
CAATCATTACAACAGGGGCCGGCGACGCAACCGCCACCATCGCGGAAGCC
GTCGGCGTTGTTGAACACGAGTATTAGGGAGAAGGTCGTACCGACAGGTT
GTGTGGGAAAGGCAAGGCTCAAAGACGCTAGAGGTGAGGGAAATGAGGGC
ACCCATCCTCGACAGACGTTAGATGCTTGTTGCCCTTTTTAAGTTAGCCA
CCAGCCATTCTTGAGAGTCTTTCTTTGGAAGACTTGAGTTCAGGGACAAT
CAGAAGCCGACCGGGTTGCGGCGAGATGTTACAGTTTTGTTATTTTGTAC
ATGAGTTCTAAATTTGTTGCTTTTGCGCCACACCGTAGCTTGCGACTTTT
TGTCGAGCGCTCAACGTGTGTTTGTTGGTGTGTCAATGCTGAGGTTCGAA
CCAGTGACGTTCAGGACGAAAAGCGGACATAATATGAATCGGTGCCGCCG
GCGTGAATATGAGGGGCCACGGTCCTCGACAGATGTTGGGTGCTTATCGT
CACCTGTTTTAATAGGTTACTAAGGTAGGCTACCACAGACGAGATATTTG
CAGGTGAAAGTTGCATGTCTGATTCTCGAACTGTCGATGGACATTTTTTC
AACGGATAATATTTGGTTTTTATGTTGGCATTGCGTCTGCTGCTCCTGCT
GCTGTGTCTGCTGCTAATGCTCCTTGCTGAAACAGCGAAAACGTCCGCTG
GTGGTGAGGCGGCAGGTGGTACGGGTGGTGGAGGTGGTGGTGGAGGTGAA
GGTGTCCGATCTCCCTGTGCAGCGAACATCGCCGTCGATGGTATGGTTAC
TGTCGACGACGCCGCTACTGCGGACGAGCTCGTCACCGACGATGATGACT
CTATCAATGTGGAGAATGACACAGTGGCCGTGGGTAATAATTCTAATAAC
AACGAGGGCAGCACTATTGTCACGCCGCCAGCACGGGCAGCAGCTGTACC
ACCATCCTCGACAGTAGCAGCAGCAGCAGGAGAAGGAACGACAATGGCGA
CAACAACAAGAGCAGATGGTGGCACTGGCGCTAGCAGAGCACAATCACCC
GTTGGAGGTCTTGTGTCCTCCGAGGCGGGAGCAAGTGCGGCGATGGCAGG
GGTACCGGCGGTGGGAGTTTCGACTGCGGCTCTGTCGGGCATTTCTTTTG
GGTGGGGAGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3199:2859..4272+

>mRNA_H-paniculata_contig3199.8606.1 ID=mRNA_H-paniculata_contig3199.8606.1|Name=mRNA_H-paniculata_contig3199.8606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at H-paniculata_contig3199:2859..4272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCTTCCATAGGCACTCCTACGGACGGTGTGGACGTTGAAGTTGA
CGTTGGAGAGGACGATGTTGACGTCGACGTTGACGTGATGGAGGACTTCC
CCGATGGAACTACCGAAGAAGGTTCTTCGCTCTTCGCGGCCGCGGGAGCA
GAAGAGCAATCATTACAACAGGGGCCGGCGACGCAACCGCCACCATCGCG
GAAGCCGTCGGCGTTGTTGAACACGAGTATTAGGGAGAAGGTCGTACCGA
CAGGTTGTGTGGGAAAGGCAAGGCTCAAAGACGCTAGAGATGTCATCTTC
CATAGGCACTCCTACGGACGGTGTGGACGTTGAAGTTGACGTTGGAGAGG
ACGATGTTGACGTCGACGTTGACGTGATGGAGGACTTCCCCGATGGAACT
ACCGAAGAAGGTTCTTCGCTCTTCGCGGCCGCGGGAGCAGAAGAGCAATC
ATTACAACAGGGGCCGGCGACGCAACCGCCACCATCGCGGAAGCCGTCGG
CGTTGTTGAACACGAGTATTAGGGAGAAGGTCGTACCGACAGGTTGTGTG
GGAAAGGCAAGGCTCAAAGACGCTAGAGCGAAAACGTCCGCTGGTGGTGA
GGCGGCAGGTGGTACGGGTGGTGGAGGTGGTGGTGGAGGTGAAGGTGTCC
GATCTCCCTGTGCAGCGAACATCGCCGTCGATGGTATGGTTACTGTCGAC
GACGCCGCTACTGCGGACGAGCTCGTCACCGACGATGATGACTCTATCAA
TGTGGAGAATGACACAGTGGCCGTGGGTAATAATTCTAATAACAACGAGG
GCAGCACTATTGTCACGCCGCCAGCACGGGCAGCAGCTGTACCACCATCC
TCGACAGTAGCAGCAGCAGCAGGAGAAGGAACGACAATGGCGACAACAAC
AAGAGCAGATGGTGGCACTGGCGCTAGCAGAGCACAATCACCCGTTGGAG
GTCTTGTGTCCTCCGAGGCGGGAGCAAGTGCGGCGATGGCAGGGGTACCG
GCGGTGGGAGTTTCGACTGCGGCTCTGTCGGGCATTTCTTTTGGGTGGGG
AGGGTGACGAAAACGTCCGCTGGTGGTGAGGCGGCAGGTGGTACGGGTGG
TGGAGGTGGTGGTGGAGGTGAAGGTGTCCGATCTCCCTGTGCAGCGAACA
TCGCCGTCGATGGTATGGTTACTGTCGACGACGCCGCTACTGCGGACGAG
CTCGTCACCGACGATGATGACTCTATCAATGTGGAGAATGACACAGTGGC
CGTGGGTAATAATTCTAATAACAACGAGGGCAGCACTATTGTCACGCCGC
CAGCACGGGCAGCAGCTGTACCACCATCCTCGACAGTAGCAGCAGCAGCA
GGAGAAGGAACGACAATGGCGACAACAACAAGAGCAGATGGTGGCACTGG
CGCTAGCAGAGCACAATCACCCGTTGGAGGTCTTGTGTCCTCCGAGGCGG
GAGCAAGTGCGGCGATGGCAGGGGTACCGGCGGTGGGAGTTTCGACTGCG
GCTCTGTCGGGCATTTCTTTTGGGTGGGGAGGGTGA
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