prot_H-paniculata_contig3196.8602.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3196.8602.1
Unique Nameprot_H-paniculata_contig3196.8602.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length118
Homology
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: A0A835ZMS4_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMS4_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.760e-51
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 0
Query:   11 DEERDEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            D+ER+EEFA+GPLSLLMQSVKNN QVLINVRNNHKLLAR+KAFDRHCNMVLTDVKEMWT+ PK GKG+KKA+ V         NKDRYVSKMFLRGDSV+LVL+NP
Sbjct:   11 DKEREEEFASGPLSLLMQSVKNNNQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEMWTDVPKKGKGQKKAHPV---------NKDRYVSKMFLRGDSVILVLKNP 107          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: A0A7S2XVF6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.550e-49
Identity = 82/107 (76.64%), Postives = 90/107 (84.11%), Query Frame = 0
Query:   10 PDEERDEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            P+ E  +EF TGPLS+LMQSVK NTQVLINVRNNHKLLAR+KAFDRHCNMVL +VKEMWTE PKTGKGKKKA         K VNKDRY+SKMFLRGDSV+LVL+NP
Sbjct:   10 PEGENKDEFNTGPLSILMQSVKQNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA---------KPVNKDRYISKMFLRGDSVILVLKNP 107          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: A0A7S2GCZ6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCZ6_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.980e-48
Identity = 78/109 (71.56%), Postives = 94/109 (86.24%), Query Frame = 0
Query:    9 GPDEERDEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNPA 117
            GP+ ++++EFATGPLS+LM SVKNNTQVLINVRNNHKLLAR+KAFDRHCNMVL +VKEMWT+ PK+GKG KK+         K VNK+RY+SKMFLRGDSV+LVL+NP+
Sbjct:   12 GPEGDKEQEFATGPLSVLMHSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTDVPKSGKGAKKS---------KPVNKERYISKMFLRGDSVILVLKNPS 111          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: A0A6A4WKZ7_AMPAM (Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bilateria TaxID=33213 RepID=A0A6A4WKZ7_AMPAM)

HSP 1 Score: 156 bits (394), Expect = 4.320e-47
Identity = 85/116 (73.28%), Postives = 91/116 (78.45%), Query Frame = 0
Query:    1 MNGEERIKGPDEERDEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            MN EE  K      +EEF TGPLS+L QSVKNNTQVLIN RNN KLLAR+KAFDRHCNMVL +VKEMWTE PKTGKGKKKA         K VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   10 MNPEELAKM----EEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTELPKTGKGKKKA---------KPVNKDRYISKMFLRGDSVILVLRNP 112          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: D7FW42_ECTSI (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW42_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.620e-46
Identity = 80/90 (88.89%), Postives = 81/90 (90.00%), Query Frame = 0
Query:   27 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKG+KKA         KAVNKDRYVSKMFLRGDSVVLVLRNP
Sbjct:    1 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKA---------KAVNKDRYVSKMFLRGDSVVLVLRNP 81          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: F4QA52_CAVFA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QA52_CAVFA)

HSP 1 Score: 154 bits (389), Expect = 1.880e-46
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 0
Query:   11 DEERDE--EFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            +E+RD+  EF TGPLS+LM+SVKNNTQ+LINVRNN KLLAR++AFDRHCNMVL +VKEMWTE PKTGKGKKKA         K VNKDR++SKMFLRGDSV+LVL+NP
Sbjct:    9 EEDRDDLKEFETGPLSILMESVKNNTQILINVRNNKKLLARVRAFDRHCNMVLENVKEMWTEVPKTGKGKKKA---------KPVNKDRFISKMFLRGDSVILVLKNP 107          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: C1BS97_LEPSM (Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Protostomia TaxID=33317 RepID=C1BS97_LEPSM)

HSP 1 Score: 154 bits (388), Expect = 3.130e-46
Identity = 79/102 (77.45%), Postives = 84/102 (82.35%), Query Frame = 0
Query:   15 DEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            +EEF TGPLS+L QSVKNNTQVLIN RNN KLL R+KAFDRHCNMVL  VKEMWTE PKTGKGKKKA         K VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   20 EEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKA---------KPVNKDRYISKMFLRGDSVILVLRNP 112          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: A0A7S3HBV9_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.920e-46
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 0
Query:   12 EERDE--EFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            EE+DE  EF TGPLS+LMQSVK N+QVLIN RNNHKLLAR+KAFDRHCN+VL +VKEMWTE PKTGKG KKA         + VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   13 EEKDEQAEFETGPLSVLMQSVKQNSQVLINCRNNHKLLARVKAFDRHCNLVLENVKEMWTETPKTGKGAKKA---------RPVNKDRYISKMFLRGDSVILVLRNP 110          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: A0A2T7P031_POMCA (Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mollusca TaxID=6447 RepID=A0A2T7P031_POMCA)

HSP 1 Score: 153 bits (387), Expect = 4.440e-46
Identity = 79/101 (78.22%), Postives = 85/101 (84.16%), Query Frame = 0
Query:   16 EEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            EEF TGPLS+L QSVKNNTQVLIN RNN KLLAR+KAFDRHCNMVL +VKEMWTE PKTGKGKKK+         K VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   19 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS---------KPVNKDRYISKMFLRGDSVILVLRNP 110          
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Match: C3XTF6_BRAFL (Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bilateria TaxID=33213 RepID=C3XTF6_BRAFL)

HSP 1 Score: 153 bits (386), Expect = 6.500e-46
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 0
Query:   16 EEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVSKMFLRGDSVVLVLRNP 116
            EEF TGPLS+L QSVKNNTQVLIN RNN KLLAR+KAFDRHCNMVL +VKEMWTE PKTGKGKKK+         K +NKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   19 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKS---------KPINKDRYISKMFLRGDSVILVLRNP 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3196.8602.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZMS4_9STRA6.760e-5179.25Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Trib... [more]
A0A7S2XVF6_9STRA4.550e-4976.64Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibr... [more]
A0A7S2GCZ6_9STRA2.980e-4871.56Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Flor... [more]
A0A6A4WKZ7_AMPAM4.320e-4773.28Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bila... [more]
D7FW42_ECTSI1.620e-4688.89Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ecto... [more]
F4QA52_CAVFA1.880e-4673.15Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Cave... [more]
C1BS97_LEPSM3.130e-4677.45Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Prot... [more]
A0A7S3HBV9_9STRA3.920e-4674.77Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spum... [more]
A0A2T7P031_POMCA4.440e-4678.22Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mol... [more]
C3XTF6_BRAFL6.500e-4677.23Small nuclear ribonucleoprotein Sm D2 n=6 Tax=Bila... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 26..114
e-value: 1.3E-17
score: 74.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 31..112
e-value: 9.5E-18
score: 63.7
NoneNo IPR availableGENE3D2.30.30.100coord: 3..117
e-value: 2.2E-36
score: 125.9
NoneNo IPR availablePANTHERPTHR12777:SF1coord: 13..116
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 13..116
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 21..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3196contigH-paniculata_contig3196:2087..4719 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3196.8602.1mRNA_H-paniculata_contig3196.8602.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3196 1820..5530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3196.8602.1 ID=prot_H-paniculata_contig3196.8602.1|Name=mRNA_H-paniculata_contig3196.8602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MNGEERIKGPDEERDEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARI
KAFDRHCNMVLTDVKEMWTEQPKTGKGKKKANAVGKDQKPKAVNKDRYVS
KMFLRGDSVVLVLRNPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027248Sm_D2
IPR010920LSM_dom_sf