mRNA_H-paniculata_contig3190.8592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3190.8592.1
Unique NamemRNA_H-paniculata_contig3190.8592.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3190.8592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3190contigH-paniculata_contig3190:11760..12664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3190.8592.1prot_H-paniculata_contig3190.8592.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3190 11783..12632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.231859-UTR-H-paniculata_contig3190:11759..117821622929983.231859-UTR-H-paniculata_contig3190:11759..11782Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3190 11760..11782 +
1691481097.4118583-UTR-H-paniculata_contig3190:11759..117821691481097.4118583-UTR-H-paniculata_contig3190:11759..11782Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3190 11760..11782 +
1622929983.2786174-UTR-H-paniculata_contig3190:12632..126641622929983.2786174-UTR-H-paniculata_contig3190:12632..12664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3190 12633..12664 +
1691481097.4426386-UTR-H-paniculata_contig3190:12632..126641691481097.4426386-UTR-H-paniculata_contig3190:12632..12664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3190 12633..12664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.248925-CDS-H-paniculata_contig3190:11782..118021622929983.248925-CDS-H-paniculata_contig3190:11782..11802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3190 11783..11802 +
1691481097.4211628-CDS-H-paniculata_contig3190:11782..118021691481097.4211628-CDS-H-paniculata_contig3190:11782..11802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3190 11783..11802 +
1622929983.2645779-CDS-H-paniculata_contig3190:12454..126321622929983.2645779-CDS-H-paniculata_contig3190:12454..12632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3190 12455..12632 +
1691481097.4303727-CDS-H-paniculata_contig3190:12454..126321691481097.4303727-CDS-H-paniculata_contig3190:12454..12632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3190 12455..12632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3190.8592.1

>prot_H-paniculata_contig3190.8592.1 ID=prot_H-paniculata_contig3190.8592.1|Name=mRNA_H-paniculata_contig3190.8592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MQSPYKSAGVARYVGGNAGDGVLGWLGKHLGFRMRNNTFSWLWMISRFWG
VSKHTSVAHTCCVQV*
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mRNA from alignment at H-paniculata_contig3190:11760..12664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3190.8592.1 ID=mRNA_H-paniculata_contig3190.8592.1|Name=mRNA_H-paniculata_contig3190.8592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at H-paniculata_contig3190:11760..12664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTAGGTGGCCGCGTTAGCCGAATGCAATCACCTTACAAAAGGTGAGCG
CTGTTCACCGTGTTTTGTTTGTGTCTTTCTTACGATATCCTTGTCGGCGA
CGAAGCAGATTTAGCACAACTTCCGCTGCTCACTACACTGTGTGGTGTTT
ATTCAACTCTCCATGCACCGTCCCTTTCGCACAGCTCGGATTTCGCAGCC
GATTTGCCTCGAGACAGCTGGGAAAAATGATCCAAAAATTGTCGACTGTT
GTGAACAGTACTAAATCCGTTTCGTTGCCAGCGTATCCGTGTGACATTTT
GTAGTAGACAGGGTCTGAGAGGTGTGTTTACAAGCTAATTTTCGCAAGCG
GGATAGGGTAGCCTTGTCAAGAAATGGTGACTTGCTCGCTCCGCCGGAGC
GTCCACCTCGTTCCGTGCGGGCGTTAGGTTGCCCCGGTAACTAGATTGTT
TTCGGAAACTTTCGAGAAGACTCGGAGTCCCAAACGCGTCAGAGCTAAGG
ATAGAGACTCAAAGAGGAGACCTCGCCATTATCCCACCACACTCCGTTCA
GCGTCGGCACGCGCATGCAAGTCGTCAGGATTATTACCCGCGGCATGTAC
TACATTTTCTTGTTCCATGCAATCTATACCTGTAAGATATTTCCGAAGTT
GCAACAACTCATTGGTCATTTTTCGCCCCCTTCGTGCTGTGCCAGCGCCG
GCGTTGCTCGATACGTTGGCGGCAACGCTGGCGATGGAGTCCTTGGCTGG
CTTGGCAAACATCTGGGGTTTCGAATGAGAAACAACACTTTCTCGTGGCT
TTGGATGATCAGTCGTTTCTGGGGTGTCTCGAAACATACGTCTGTGGCAC
ATACGTGTTGCGTGCAAGTATAGAGGGATTCGCACGAGATACTGAGACAC
TGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3190:11760..12664+

>mRNA_H-paniculata_contig3190.8592.1 ID=mRNA_H-paniculata_contig3190.8592.1|Name=mRNA_H-paniculata_contig3190.8592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig3190:11760..12664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAATCACCTTACAAAAGATGCAATCACCTTACAAAAGCGCCGGCGTT
GCTCGATACGTTGGCGGCAACGCTGGCGATGGAGTCCTTGGCTGGCTTGG
CAAACATCTGGGGTTTCGAATGAGAAACAACACTTTCTCGTGGCTTTGGA
TGATCAGTCGTTTCTGGGGTGTCTCGAAACATACGTCTGTGGCACATACG
TGTTGCGTGCAAGTATAGCGCCGGCGTTGCTCGATACGTTGGCGGCAACG
CTGGCGATGGAGTCCTTGGCTGGCTTGGCAAACATCTGGGGTTTCGAATG
AGAAACAACACTTTCTCGTGGCTTTGGATGATCAGTCGTTTCTGGGGTGT
CTCGAAACATACGTCTGTGGCACATACGTGTTGCGTGCAAGTATAG
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