prot_H-paniculata_contig3188.8586.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3188.8586.1
Unique Nameprot_H-paniculata_contig3188.8586.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length453
Homology
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BLAST of mRNA_H-paniculata_contig3188.8586.1 vs. uniprot
Match: D7FLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ4_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.830e-40
Identity = 122/269 (45.35%), Postives = 145/269 (53.90%), Query Frame = 0 
Query:   51 VLLFLASTTVVSTVQAGSIGSGSGGQD--VPWWYPSEISGTSDDDAVAGEDSWRRSSRXXXXXXXXGASKENDKGGVREDVSWRRFRDAAFLAKEFVGDCVAIGVAEEEERTGFE---PSCSMHEGANATLRRLGESIDRCASPYYSLTEIYPSQLDPIVSEKQVYTEVDPAQEVXXXXXXXXXXXXXXXXXXXANRIDGTNEDILAEEMAPVQE---------DSFLGIFLFLKDDFFSIELENSLTSIAPAYPRAWLVKADAKAFLS 305
            +L+ L    ++ +V     GSG+ G +  VPWWYPS   G   D   +G                               V  RRFR+ A LA+EFV   VA G+AEEEER G     P+C + E  N TLRRLG S+DRCASPYY+L EI+PSQL        VYTEVDPA+       XXXXXXXXXXXXXX                              D+FLGIFLFLK DFFS+ELEN+LTSI PAYPRAW+VKA+A +FLS
Sbjct:   57 LLVALVVVALLGSVADAGGGSGNRGSESSVPWWYPSRDWGLPSDAVGSGXXXXXXXXXWTGLG-----------------VPRRRFREEAKLAEEFVASWVASGLAEEEERRGGSVVMPACDVLEAGNHTLRRLGASVDRCASPYYALPEIHPSQL--------VYTEVDPAEAAEKRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNFLGIFLFLKGDFFSVELENALTSIMPAYPRAWVVKANAPSFLS 300
[Close]
BLAST of mRNA_H-paniculata_contig3188.8586.1 vs. uniprot
Match: A0A6H5K6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z1_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.620e-40
Identity = 121/270 (44.81%), Postives = 142/270 (52.59%), Query Frame = 0 
Query:   44 RAPYLVYVLLFLASTTVVSTVQAGSIGSGSGGQDVPWWYPSEISGTSDDDAVAGEDSWRRSSRXXXXXXXXGASKENDKGGVREDVSWRRFRDAAFLAKEFVGDCVAIGVAEEEERTGFE---PSCSMHEGANATLRRLGESIDRCASPYYSLTEIYPSQLDPIVSEKQVYTEVDPAQEVXXXXXXXXXXXXXXXXXXXANRIDGTNEDILAEEMAPVQE------DSFLGIFLFLKDDFFSIELENSLTSIAPAYPRAWLVKADAKAFL 304
            R+P LV V++     +V   V  G  G   G   VPWWYPS   G   D   +G                               V  RRFR+ A LA++ V   VA G+AEEEER G     P+C + E  N TLRRLG S+DRCASPYY+L EI+PSQL        VYTEVDPA+        XXXXXXXXXXXXX                           D+FLGIFLFLK DFFS+ELEN+LTSI PAYPRAW+VKA+A +FL
Sbjct:   49 RSPLLVGVVVVALLGSVADAV--GGSGRRGGDSSVPWWYPSRDWGLPSDAVGSGXXXXXXXXXWTGLG-----------------VPRRRFREEAKLAEDSVASWVASGLAEEEERQGGSMVMPTCDVLEAGNHTLRRLGASVDRCASPYYTLPEIHPSQL--------VYTEVDPAEAAEKREREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNFLGIFLFLKGDFFSVELENALTSIMPAYPRAWVVKANAPSFL 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3188.8586.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLZ4_ECTSI1.830e-4045.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6Z1_9PHAE7.620e-4044.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 275..350
e-value: 1.8E-5
score: 26.4
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 398..452
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 377..397
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..376
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..67
NoneNo IPR availableTMHMMTMhelixcoord: 378..397
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 259..343

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3188contigH-paniculata_contig3188:1933..16446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3188.8586.1mRNA_H-paniculata_contig3188.8586.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3188 1849..17132 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3188.8586.1 ID=prot_H-paniculata_contig3188.8586.1|Name=mRNA_H-paniculata_contig3188.8586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=453bp
MSCLGRIRGYKRATGDSLLRKRKPGAERTRQISSTRGHRRKGSRAPYLVY
VLLFLASTTVVSTVQAGSIGSGSGGQDVPWWYPSEISGTSDDDAVAGEDS
WRRSSRSSRSSRSSGASKENDKGGVREDVSWRRFRDAAFLAKEFVGDCVA
IGVAEEEERTGFEPSCSMHEGANATLRRLGESIDRCASPYYSLTEIYPSQ
LDPIVSEKQVYTEVDPAQEVAAAREAEAERRRKAKSRRQANRIDGTNEDI
LAEEMAPVQEDSFLGIFLFLKDDFFSIELENSLTSIAPAYPRAWLVKADA
KAFLSFCVQYHLYTFPQLLLFKNGRFISRFSGRRLSKDLAGWLSMHTGDL
PRAAPRRPLPPPPLPNPLTLPGIDDPVAWAALLYAGIKLCMVVLWLFKRR
NRGPEGTEEAGRGLLGLAGRVKRMGAWVASRLLWRRRRGGGGRTGAVSQS
AR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf