mRNA_H-paniculata_contig3188.8586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3188.8586.1 vs. uniprot
Match: D7FLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ4_ECTSI) HSP 1 Score: 156 bits (395), Expect = 5.690e-39 Identity = 122/269 (45.35%), Postives = 145/269 (53.90%), Query Frame = 1
Query: 235 VLLFLASTTVVSTVQAGSIGSGSGGQD--VPWWYPSEISGTSDDDAVAGEDSWRRSSRXXXXXXXXGASKENDKGGVREDVSWRRFRDAAFLAKEFVGDCVAIGVAEEEERTGFE---PSCSMHEGANATLRRLGESIDRCASPYYSLTEIYPSQLDPIVSEKQVYTEVDPAQEVXXXXXXXXXXXXXXXXXXXANRIDGTNEDILAEEMAPVQE---------DSFLGIFLFLKDDFFSIELENSLTSIAPAYPRAWLVKADAKAFLS 999
+L+ L ++ +V GSG+ G + VPWWYPS G D +G V RRFR+ A LA+EFV VA G+AEEEER G P+C + E N TLRRLG S+DRCASPYY+L EI+PSQL VYTEVDPA+ XXXXXXXXXXXXXX D+FLGIFLFLK DFFS+ELEN+LTSI PAYPRAW+VKA+A +FLS
Sbjct: 57 LLVALVVVALLGSVADAGGGSGNRGSESSVPWWYPSRDWGLPSDAVGSGXXXXXXXXXWTGLG-----------------VPRRRFREEAKLAEEFVASWVASGLAEEEERRGGSVVMPACDVLEAGNHTLRRLGASVDRCASPYYALPEIHPSQL--------VYTEVDPAEAAEKRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNFLGIFLFLKGDFFSVELENALTSIMPAYPRAWVVKANAPSFLS 300
BLAST of mRNA_H-paniculata_contig3188.8586.1 vs. uniprot
Match: A0A6H5K6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z1_9PHAE) HSP 1 Score: 155 bits (391), Expect = 2.230e-38 Identity = 121/270 (44.81%), Postives = 142/270 (52.59%), Query Frame = 1
Query: 214 RAPYLVYVLLFLASTTVVSTVQAGSIGSGSGGQDVPWWYPSEISGTSDDDAVAGEDSWRRSSRXXXXXXXXGASKENDKGGVREDVSWRRFRDAAFLAKEFVGDCVAIGVAEEEERTGFE---PSCSMHEGANATLRRLGESIDRCASPYYSLTEIYPSQLDPIVSEKQVYTEVDPAQEVXXXXXXXXXXXXXXXXXXXANRIDGTNEDILAEEMAPVQE------DSFLGIFLFLKDDFFSIELENSLTSIAPAYPRAWLVKADAKAFL 996
R+P LV V++ +V V G G G VPWWYPS G D +G V RRFR+ A LA++ V VA G+AEEEER G P+C + E N TLRRLG S+DRCASPYY+L EI+PSQL VYTEVDPA+ XXXXXXXXXXXXX D+FLGIFLFLK DFFS+ELEN+LTSI PAYPRAW+VKA+A +FL
Sbjct: 49 RSPLLVGVVVVALLGSVADAV--GGSGRRGGDSSVPWWYPSRDWGLPSDAVGSGXXXXXXXXXWTGLG-----------------VPRRRFREEAKLAEDSVASWVASGLAEEEERQGGSMVMPTCDVLEAGNHTLRRLGASVDRCASPYYTLPEIHPSQL--------VYTEVDPAEAAEKREREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNFLGIFLFLKGDFFSVELENALTSIMPAYPRAWVVKANAPSFL 291 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3188.8586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3188.8586.1 >prot_H-paniculata_contig3188.8586.1 ID=prot_H-paniculata_contig3188.8586.1|Name=mRNA_H-paniculata_contig3188.8586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=453bp MSCLGRIRGYKRATGDSLLRKRKPGAERTRQISSTRGHRRKGSRAPYLVYback to top mRNA from alignment at H-paniculata_contig3188:1849..17132+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3188.8586.1 ID=mRNA_H-paniculata_contig3188.8586.1|Name=mRNA_H-paniculata_contig3188.8586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15284bp|location=Sequence derived from alignment at H-paniculata_contig3188:1849..17132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3188:1849..17132+ >mRNA_H-paniculata_contig3188.8586.1 ID=mRNA_H-paniculata_contig3188.8586.1|Name=mRNA_H-paniculata_contig3188.8586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2718bp|location=Sequence derived from alignment at H-paniculata_contig3188:1849..17132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |