mRNA_H-paniculata_contig3184.8576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3184.8576.1
Unique NamemRNA_H-paniculata_contig3184.8576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A6H5JJ68_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ68_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 2.920e-85
Identity = 165/223 (73.99%), Postives = 178/223 (79.82%), Query Frame = 1
Query:    1 KEAVFKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVKNSFEV 669
            KEAVFKA GKTFKYAKTSLY+FDELNP RVACVKTIAHPWFDRFILFLI+LNS VLALTDWSVI+++P S  VG+PI +GSWRN LLF+SE VFT FFT+EFVLKV+AQGF+ GRGSYLRDSWNILDFMVVVTAL+TSIP MXXXXXXXXXXXXXXXXXXXXXXXX                                IQIFAGKQHSRCRLTP+PV NSFEV
Sbjct:   24 KEAVFKACGKTFKYAKTSLYVFDELNPVRVACVKTIAHPWFDRFILFLIVLNSFVLALTDWSVIDDDPNSPDVGEPIDDGSWRNALLFESEAVFTAFFTLEFVLKVIAQGFYLGRGSYLRDSWNILDFMVVVTALMTSIPGMXXXXXXXXXXXXXXXXXXXXXXXXQKLVVGMLRSVPQLVSVVILLQFIFTVFGIFGIQIFAGKQHSRCRLTPFPVNNSFEV 246          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 1.700e-79
Identity = 197/223 (88.34%), Postives = 210/223 (94.17%), Query Frame = 1
Query:    1 KEAVFKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVKNSFEV 669
            KEAVFKA GKTFKYAKTSLY+FDELNP RVACVKTIAHPWFDRFILFLI+LNS VLALTDWSVI+++P S  VG+PI +GSWRN LLF+SE VFT FFT+EFVLKV+AQGF+ GRGSYLRDSWNILDFMVVVTAL+TSIP MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTP+PV NSFEV
Sbjct:   24 KEAVFKACGKTFKYAKTSLYVFDELNPVRVACVKTIAHPWFDRFILFLIVLNSFVLALTDWSVIDDDPNSPDVGEPIDDGSWRNALLFESEAVFTAFFTLEFVLKVIAQGFYLGRGSYLRDSWNILDFMVVVTALMTSIPGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPFPVNNSFEV 246          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: D8LI94_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI94_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 1.930e-68
Identity = 131/222 (59.01%), Postives = 154/222 (69.37%), Query Frame = 1
Query:    1 KEAVFKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVKNSFE 666
            KEAVF   GK   Y ++SLY+F E +  RVACVK +AHPWFDRFIL +I LNS+VLALTDW+ I+E+P SE VG+PI EGSWRN LL+++E +FT  FT+EFVLKVV+QGF  G G+YLRD+WN+LDF+VVVTALLTSIP M        XXXXXXXXXXXXXXXX                                IQ+FAGKQHSRCRLTPYPV  +FE
Sbjct:    3 KEAVFDFHGKHLVYPRSSLYLFSEKSRVRVACVKLVAHPWFDRFILLVIALNSIVLALTDWTRIDEDPSSEDVGEPIAEGSWRNTLLYETEGIFTAIFTLEFVLKVVSQGFIFGHGAYLRDAWNVLDFVVVVTALLTSIPGMPTATAIRVXXXXXXXXXXXXXXXXQHLVVSMLKSVPQLVSVLILLQFIFVVFGILGIQLFAGKQHSRCRLTPYPVTTAFE 224          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 6.750e-60
Identity = 129/222 (58.11%), Postives = 154/222 (69.37%), Query Frame = 1
Query:    4 EAVFKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVKNSFEV 669
            EAV+  +GK   Y K+SLY+F E +  RVA VK +AHPWFDRFIL +I LNS+VLALTDW+ I+E+P SE VG+PI EGSWRN LL+++E +FT  FT+EFVLKVV+QGF  G G+YLRD+WN+LDF+VVVTA+LTSIP M       XXXXXXXXXXXXXXXXX                                IQ+FAGKQHSRCRLTPYPV  +FE 
Sbjct:   25 EAVYDFYGKHLVYPKSSLYLFSEKSRVRVAFVKLVAHPWFDRFILLVIALNSIVLALTDWTRIDEDPSSEHVGEPIAEGSWRNTLLYETESMFTAIFTLEFVLKVVSQGFIFGHGAYLRDAWNVLDFVVVVTAVLTSIPGMPTATAIRXXXXXXXXXXXXXXXXXQHLVVSMLKSVPQLVSVLILLQFIFVVFGILGIQLFAGKQHSRCRLTPYPVTTAFET 246          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A7S1G9I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9I4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 8.330e-30
Identity = 77/214 (35.98%), Postives = 106/214 (49.53%), Query Frame = 1
Query:   13 FKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVK 654
            F A GK  +++  SLY+F   NP R   V  I   +FDRFIL LI+ NS+VLALTD+S +   P+       ++  SWRN ++ ++EI FT  F  E  LK++A GFF   GSYLRD WNI+DF+VV+T +LT++P M                                                        IQI+ G  H+RCR+TPYP++
Sbjct:   15 FFAHGKARRFSPKSLYLFSTTNPIRKRIVWLIEWKYFDRFILMLIIANSIVLALTDYSSVL--PDGT-----LSMSSWRNQVVEETEIYFTTLFAAECSLKIIAMGFFVDIGSYLRDGWNIMDFVVVMTGVLTTVPGMPNVSAFRTVRVLRPLRSLTVVPGMRLLVTSLLRSIPALLNVVALLLFVFAIFGILGIQIWQGLLHARCRMTPYPIQ 221          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A5A8CCH9_CAFRO (Ion_trans domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CCH9_CAFRO)

HSP 1 Score: 110 bits (276), Expect = 2.670e-24
Identity = 94/217 (43.32%), Postives = 114/217 (52.53%), Query Frame = 1
Query:    4 EAVFKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVK 654
            E  F A GKTF +A  SL +FDE +  R   V  +   WFDR +L LIL NS+ LA+TD+S    +P +     P    S RN +    E VF   FT+E VLK+VA GF    GSYLR  WN+LDF+VV +ALL++IP  XXXXXXXXXXXXXXXXX                                         +FAG    RCRLTPYPV+
Sbjct:   53 EVNFVAHGKTFMFAPRSLGLFDETSSIRQLAVWLVTWSWFDRLVLLLILANSVTLAITDYSATAVDPVTML---PDPGRSPRNAIGEALEPVFLWSFTVEMVLKIVAMGFALSPGSYLRSGWNVLDFIVVASALLSAIPGXXXXXXXXXXXXXXXXXXLTVLPGMRVLVGSLLASLPELASVGVLLGFVFLLFGILAQNLFAGLLPRRCRLTPYPVE 266          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A8K1CRX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRX9_PYTOL)

HSP 1 Score: 110 bits (276), Expect = 2.880e-24
Identity = 121/214 (56.54%), Postives = 154/214 (71.96%), Query Frame = 1
Query:   13 FKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVK 654
            F A GK F +A  SL +FDE N FR A +  I    FD+FIL LI  NS++L+L D+S +++N + ++        S RN ++ +++ +FTIFF++E  +K++A G    RG+YL D WN LDF+VV   +L  IP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +Q+++G  H RCRLTPYPV+
Sbjct:   79 FYAHGKRFLFAPCSLGVFDESNRFRQAIIWCITWKRFDQFILLLIFANSIILSLADYSKVDKNGDLDS------STSIRNAIVNRADRIFTIFFSIECSMKIIAMGLIGERGAYLMDPWNWLDFVVVFFGILAVIPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIGVQLWSGVLHPRCRLTPYPVR 286          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A2D4C6S1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6S1_PYTIN)

HSP 1 Score: 110 bits (276), Expect = 2.890e-24
Identity = 108/214 (50.47%), Postives = 140/214 (65.42%), Query Frame = 1
Query:   13 FKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQIFAGKQHSRCRLTPYPVK 654
            F A GK F +A  SL +F E + FR   V  I    FD+FILFLI  NS++LA+ D+S ++E+ + ++        S+RN ++  ++ +FT  FT+E  LK++A G F  +G+YL D WN LDF VV   LL +IP +XXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXX    +Q+++G  HSRCRLTPYPV+
Sbjct:   84 FYAHGKRFLFAPLSLGLFPESSRFRQLVVWCITSKRFDQFILFLIFANSIILAIADYSKVDEHGDLDS------SRSYRNAVVNYADSIFTALFTVECSLKIIAMGMFGEKGAYLMDPWNGLDFAVVFVGLLATIPGIXXXXXXXXXXXXXXXXXXXXXXXXKKLINALLKSIPELXXXXXXXXXXXXXXGVIGVQLWSGVLHSRCRLTPYPVR 291          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A7S0PH88_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PH88_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 1.950e-23
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   13 FKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALL 408
            F    K  K+AK SL+  DE + FR + V  IAHP F+  IL LI+ NS+VLA+T++S +  N + +T   P       N  + +SE+VFT  F +E VLK++A GF   RG+YLRD WN+LDF+VV+  LL
Sbjct:   73 FAVHDKKLKFAKNSLFCLDESSSFRWSVVWLIAHPVFELVILLLIIANSIVLAMTNYSEVTANGQLDT-SDPF------NRAVDESELVFTTLFAIEMVLKIIAMGFVLERGAYLRDPWNVLDFIVVMAGLL 197          
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Match: A0A5A8D5B1_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B1_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 3.480e-23
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   13 FKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLILLNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTMEFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALL 408
            F    K  K+AK SL+  DE + FR + V  IAHP F+  IL LI+ NS+VLA+T++S +  N + +T   P       N  + +SE+VFT  F +E VLK++A GF   RG+YLRD WN+LDF+VV+  LL
Sbjct:   37 FAVHDKKLKFAKNSLFCLDESSSFRWSVVWLIAHPVFELVILLLIIANSIVLAMTNYSEVTANGQLDT-SDPF------NRAVDESELVFTTLFAIEMVLKIIAMGFVLERGAYLRDPWNVLDFIVVMAGLL 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3184.8576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ68_9PHAE2.920e-8573.99Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FVE6_ECTSI1.700e-7988.34Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
D8LI94_ECTSI1.930e-6859.01Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPD7_9PHAE6.750e-6058.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1G9I4_9STRA8.330e-3035.98Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8CCH9_CAFRO2.670e-2443.32Ion_trans domain-containing protein n=4 Tax=Cafete... [more]
A0A8K1CRX9_PYTOL2.880e-2456.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C6S1_PYTIN2.890e-2450.47Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S0PH88_CAFRO1.950e-2345.45Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8D5B1_CAFRO3.480e-2345.45Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3184contigH-paniculata_contig3184:907..1587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue3.1e-71
Seed eggNOG ortholog2880.D7FVE6
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size681
Cds size681
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.2771647-CDS-H-paniculata_contig3184:906..15871622929981.2771647-CDS-H-paniculata_contig3184:906..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3184 907..1587 -
1691481096.3689024-CDS-H-paniculata_contig3184:906..15871691481096.3689024-CDS-H-paniculata_contig3184:906..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3184 907..1587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3184.8576.1prot_H-paniculata_contig3184.8576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3184 907..1587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3184.8576.1

>prot_H-paniculata_contig3184.8576.1 ID=prot_H-paniculata_contig3184.8576.1|Name=mRNA_H-paniculata_contig3184.8576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
KEAVFKAFGKTFKYAKTSLYIFDELNPFRVACVKTIAHPWFDRFILFLIL
LNSLVLALTDWSVINENPESETVGQPITEGSWRNLLLFKSEIVFTIFFTM
EFVLKVVAQGFFRGRGSYLRDSWNILDFMVVVTALLTSIPEMPKMSAIRV
FRVLRPLKSISALPGLQKLVVSMLRSVPQLVSVVILLQFIFTVFGIFGIQ
IFAGKQHSRCRLTPYPVKNSFEVRRR*
back to top

mRNA from alignment at H-paniculata_contig3184:907..1587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3184.8576.1 ID=mRNA_H-paniculata_contig3184.8576.1|Name=mRNA_H-paniculata_contig3184.8576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=681bp|location=Sequence derived from alignment at H-paniculata_contig3184:907..1587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAGGCCGTCTTCAAGGCATTCGGCAAAACGTTCAAGTACGCCAAGAC GTCTCTCTATATATTCGATGAGCTGAACCCCTTTCGGGTGGCATGCGTGA AGACCATTGCCCATCCGTGGTTCGACCGCTTCATCTTGTTCTTGATTCTG CTCAATTCACTTGTGCTTGCGTTGACCGACTGGTCTGTGATCAATGAGAA CCCTGAGTCGGAAACTGTGGGCCAACCGATAACGGAAGGTTCATGGCGCA ACCTTCTTCTGTTCAAGTCGGAGATCGTCTTTACTATATTTTTCACCATG GAGTTCGTGCTAAAGGTGGTCGCACAAGGTTTTTTCCGTGGCCGGGGTTC TTATTTGCGAGACTCGTGGAACATCTTGGACTTCATGGTGGTGGTTACTG CACTCTTGACCAGCATACCCGAGATGCCGAAAATGTCTGCCATTCGGGTA TTTCGGGTCCTGCGACCATTGAAGAGTATATCCGCGCTTCCAGGGCTGCA GAAGCTAGTGGTGAGCATGCTTAGGTCGGTACCGCAGCTGGTGAGTGTGG TGATTTTGCTGCAGTTCATCTTCACCGTGTTTGGGATCTTCGGCATACAG ATTTTTGCGGGCAAGCAGCACTCGCGGTGTCGTCTCACACCATACCCGGT GAAAAATAGTTTCGAGGTGAGAAGACGTTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3184:907..1587-

>mRNA_H-paniculata_contig3184.8576.1 ID=mRNA_H-paniculata_contig3184.8576.1|Name=mRNA_H-paniculata_contig3184.8576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig3184:907..1587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAGGCCGTCTTCAAGGCATTCGGCAAAACGTTCAAGTACGCCAAGAC
GTCTCTCTATATATTCGATGAGCTGAACCCCTTTCGGGTGGCATGCGTGA
AGACCATTGCCCATCCGTGGTTCGACCGCTTCATCTTGTTCTTGATTCTG
CTCAATTCACTTGTGCTTGCGTTGACCGACTGGTCTGTGATCAATGAGAA
CCCTGAGTCGGAAACTGTGGGCCAACCGATAACGGAAGGTTCATGGCGCA
ACCTTCTTCTGTTCAAGTCGGAGATCGTCTTTACTATATTTTTCACCATG
GAGTTCGTGCTAAAGGTGGTCGCACAAGGTTTTTTCCGTGGCCGGGGTTC
TTATTTGCGAGACTCGTGGAACATCTTGGACTTCATGGTGGTGGTTACTG
CACTCTTGACCAGCATACCCGAGATGCCGAAAATGTCTGCCATTCGGGTA
TTTCGGGTCCTGCGACCATTGAAGAGTATATCCGCGCTTCCAGGGCTGCA
GAAGCTAGTGGTGAGCATGCTTAGGTCGGTACCGCAGCTGGTGAGTGTGG
TGATTTTGCTGCAGTTCATCTTCACCGTGTTTGGGATCTTCGGCATACAG
ATTTTTGCGGGCAAGCAGCACTCGCGGTGTCGTCTCACACCATACCCGGT
GAAAAATAGTTTCGAGGTGAGAAGACGTTAGAAGGAGGCCGTCTTCAAGG
CATTCGGCAAAACGTTCAAGTACGCCAAGACGTCTCTCTATATATTCGAT
GAGCTGAACCCCTTTCGGGTGGCATGCGTGAAGACCATTGCCCATCCGTG
GTTCGACCGCTTCATCTTGTTCTTGATTCTGCTCAATTCACTTGTGCTTG
CGTTGACCGACTGGTCTGTGATCAATGAGAACCCTGAGTCGGAAACTGTG
GGCCAACCGATAACGGAAGGTTCATGGCGCAACCTTCTTCTGTTCAAGTC
GGAGATCGTCTTTACTATATTTTTCACCATGGAGTTCGTGCTAAAGGTGG
TCGCACAAGGTTTTTTCCGTGGCCGGGGTTCTTATTTGCGAGACTCGTGG
AACATCTTGGACTTCATGGTGGTGGTTACTGCACTCTTGACCAGCATACC
CGAGATGCCGAAAATGTCTGCCATTCGGGTATTTCGGGTCCTGCGACCAT
TGAAGAGTATATCCGCGCTTCCAGGGCTGCAGAAGCTAGTGGTGAGCATG
CTTAGGTCGGTACCGCAGCTGGTGAGTGTGGTGATTTTGCTGCAGTTCAT
CTTCACCGTGTTTGGGATCTTCGGCATACAGATTTTTGCGGGCAAGCAGC
ACTCGCGGTGTCGTCTCACACCATACCCGGTGAAAAATAGTTTCGAGGTG
AGAAGACGTTAG
back to top