mRNA_H-paniculata_contig31837.8575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31837.8575.1
Unique NamemRNA_H-paniculata_contig31837.8575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: D8LHH9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH9_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.140e-43
Identity = 69/94 (73.40%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFP 282
            IA SLGMLHP+H + EGLP+TVRTVY+I+P+K LKL+LTYPA+TGRNFDEI+R IDS+Q+T+TRSLATPADW  G  CM+LP+VS EDA EKFP
Sbjct:  112 IAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFP 205          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: Q966Y9_SUBDO (Glutathione peroxidase n=1 Tax=Suberites domuncula TaxID=55567 RepID=Q966Y9_SUBDO)

HSP 1 Score: 134 bits (336), Expect = 2.900e-37
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFPG 285
            +A   GML PE K+K GLPLT R V++I PDKKLKLSL YPATTGRNFDEILR +DS+Q+T+ + +ATPA+W  G  CMILPSVS EDA EKFPG
Sbjct:  104 LAVQFGMLDPEEKDKAGLPLTARAVFIIGPDKKLKLSLLYPATTGRNFDEILRVVDSLQLTAYKKVATPANWKNGEKCMILPSVSKEDA-EKFPG 197          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: A0A3M6T9K8_POCDA (Thioredoxin domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T9K8_POCDA)

HSP 1 Score: 134 bits (336), Expect = 3.140e-37
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFP 282
            +A  LGM+ PE K+ EGLPLT R V++I PDKKLKLSL YPATTGRNFDEILR IDS+Q+T+ + +ATPADW  G DCM+LP+V +ED  + FP
Sbjct:  105 LAVKLGMIDPEEKDAEGLPLTARAVFIIGPDKKLKLSLLYPATTGRNFDEILRVIDSLQLTAIKKVATPADWKNGGDCMVLPTVKSEDVPKLFP 198          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: UPI0018F6C154 (peroxiredoxin-6 n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6C154)

HSP 1 Score: 133 bits (335), Expect = 4.690e-37
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFP 282
            +A  LGML P  +NKEGLPLT R V++I PDK LKLS+ YPATTGRNFDEILR IDS+Q+T+ + +ATP DW  G DCM+LPS+S EDA + FP
Sbjct:  108 LAVQLGMLDPSERNKEGLPLTARAVFVIGPDKTLKLSILYPATTGRNFDEILRVIDSLQLTAYKKVATPVDWKAGGDCMVLPSISEEDAKKLFP 201          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: A0A401P679_SCYTO (Peroxiredoxin-6 n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401P679_SCYTO)

HSP 1 Score: 133 bits (335), Expect = 5.360e-37
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFP 282
            +A  LGML P  +NKEGLPLT R V++I PDK LKLS+ YPATTGRNFDEILR IDS+Q+T+ + +ATP DW  G DCM+LP++S ED T+ FP
Sbjct:  113 LAVQLGMLDPSERNKEGLPLTARAVFVIGPDKTLKLSILYPATTGRNFDEILRVIDSLQLTACKKVATPVDWKAGEDCMVLPNISEEDVTKLFP 206          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: A0A7R9A0Z9_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A0Z9_9CRUS)

HSP 1 Score: 132 bits (332), Expect = 6.000e-37
Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFPGVGGSHSL 306
            IA   GM  PE K+K+G+PLT R+V++I PDKKLKLS+ YPATTGRNFDEILR +DS+Q+T+++ +ATPA+W  G DCM++PS+S EDA + FP     H +
Sbjct:   78 IASEYGMFDPEEKDKDGIPLTCRSVFIIGPDKKLKLSMLYPATTGRNFDEILRVVDSLQLTASKRVATPANWKPGGDCMVVPSLSEEDANKLFPSGFKVHEV 179          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: A0A6P8IU89_ACTTE (peroxiredoxin-6-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IU89_ACTTE)

HSP 1 Score: 132 bits (333), Expect = 8.440e-37
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFP 282
            +A  LGM+ P+ K+ +GLPLT R V++I PDKKLKLS+ YPATTGRNF+EILR IDS+Q+T+T+ +ATP DW +G DCM+LPSVS EDA + FP
Sbjct:  103 LAVQLGMVDPDEKDAKGLPLTCRAVFIIGPDKKLKLSILYPATTGRNFNEILRVIDSLQLTATKKVATPVDWKSGEDCMVLPSVSQEDAVKLFP 196          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: Q2V9X1_HYMPE (Glutathione peroxidase n=1 Tax=Hymeniacidon perlevis TaxID=177573 RepID=Q2V9X1_HYMPE)

HSP 1 Score: 132 bits (332), Expect = 1.200e-36
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFPG 285
            +A  LGML P  K+K GLPLT R V+++ PDKKLKLSL YPATTGRNFDEILR +DS+Q+T+ + +ATPA+W  G  CMILPSVS EDA + FPG
Sbjct:  104 LAVQLGMLDPAEKDKAGLPLTARAVFIVGPDKKLKLSLLYPATTGRNFDEILRVVDSLQLTAYKKVATPANWQEGGKCMILPSVSKEDADKLFPG 198          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: UPI001E672362 (peroxiredoxin-6-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672362)

HSP 1 Score: 132 bits (332), Expect = 1.230e-36
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFP 282
            +A +LGM+ P+ KN EGLPL+ R V+LI PDK+LKLSL YPATTGRNF+EILR IDSIQ+T+ + +ATP DW  GS CM+LPSVSAE+A   FP
Sbjct:  105 LAVTLGMIDPDEKNAEGLPLSCRAVFLIGPDKRLKLSLLYPATTGRNFNEILRAIDSIQLTAAKKVATPVDWKPGSACMVLPSVSAEEAKSLFP 198          
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Match: UPI0009E4807C (peroxiredoxin-6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4807C)

HSP 1 Score: 132 bits (332), Expect = 1.260e-36
Identity = 59/94 (62.77%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 IAGSLGMLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCIDSIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFP 282
            +A  LGM+ P+ K+ +GLPLT R V++I PDK+LKLSL YPATTGRNFDEILR IDS+Q+T+T+ +ATPADW  G DCM+LP+V  ED  + FP
Sbjct:  105 LAVKLGMIDPDEKDAQGLPLTARAVFIIGPDKRLKLSLLYPATTGRNFDEILRVIDSLQLTATKKVATPADWKAGGDCMVLPTVKPEDVAKLFP 198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31837.8575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH9_ECTSI1.140e-4373.40Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
Q966Y9_SUBDO2.900e-3768.42Glutathione peroxidase n=1 Tax=Suberites domuncula... [more]
A0A3M6T9K8_POCDA3.140e-3764.89Thioredoxin domain-containing protein n=1 Tax=Poci... [more]
UPI0018F6C1544.690e-3764.89peroxiredoxin-6 n=2 Tax=Scyliorhinus canicula TaxI... [more]
A0A401P679_SCYTO5.360e-3763.83Peroxiredoxin-6 n=1 Tax=Scyliorhinus torazame TaxI... [more]
A0A7R9A0Z9_9CRUS6.000e-3757.84Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A6P8IU89_ACTTE8.440e-3763.83peroxiredoxin-6-like n=1 Tax=Actinia tenebrosa Tax... [more]
Q2V9X1_HYMPE1.200e-3665.26Glutathione peroxidase n=1 Tax=Hymeniacidon perlev... [more]
UPI001E6723621.230e-3665.96peroxiredoxin-6-like n=1 Tax=Procambarus clarkii T... [more]
UPI0009E4807C1.260e-3662.77peroxiredoxin-6-like n=1 Tax=Orbicella faveolata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31837contigH-paniculata_contig31837:1622..2371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score127.5
Seed ortholog evalue3.5e-27
Seed eggNOG ortholog126957.SMAR010545-PA
Preferred nameTPX5
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.activity. It is involved in the biological process described with oxidation-reduction process
EggNOG OGs38CN4@33154,3BBQ4@33208,3CW2U@33213,41X9B@6656,COG0450@1,KOG0854@2759
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-11_004010.1
EC1.11.1.15,1.11.1.7
COG Functional cat.O
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size312
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31837.8575.1prot_H-paniculata_contig31837.8575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31837 1622..2353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.1903343-CDS-H-paniculata_contig31837:1621..17831622929981.1903343-CDS-H-paniculata_contig31837:1621..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31837 1622..1783 -
1691481096.3238995-CDS-H-paniculata_contig31837:1621..17831691481096.3238995-CDS-H-paniculata_contig31837:1621..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31837 1622..1783 -
1622929981.2100759-CDS-H-paniculata_contig31837:2221..23531622929981.2100759-CDS-H-paniculata_contig31837:2221..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31837 2222..2353 -
1691481096.3473172-CDS-H-paniculata_contig31837:2221..23531691481096.3473172-CDS-H-paniculata_contig31837:2221..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31837 2222..2353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929981.225627-UTR-H-paniculata_contig31837:2353..23711622929981.225627-UTR-H-paniculata_contig31837:2353..2371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31837 2354..2371 -
1691481096.3577664-UTR-H-paniculata_contig31837:2353..23711691481096.3577664-UTR-H-paniculata_contig31837:2353..2371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31837 2354..2371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31837.8575.1

>prot_H-paniculata_contig31837.8575.1 ID=prot_H-paniculata_contig31837.8575.1|Name=mRNA_H-paniculata_contig31837.8575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MLHPEHKNKEGLPLTVRTVYLIAPDKKLKLSLTYPATTGRNFDEILRCID
SIQMTSTRSLATPADWTTGSDCMILPSVSAEDATEKFPGVGGSHSLV*
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mRNA from alignment at H-paniculata_contig31837:1622..2371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31837.8575.1 ID=mRNA_H-paniculata_contig31837.8575.1|Name=mRNA_H-paniculata_contig31837.8575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=750bp|location=Sequence derived from alignment at H-paniculata_contig31837:1622..2371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGCGGGATCCCTAGGCATGCTGCACCCTGAGCACAAGAACAAAGAAGG TCTTCCGCTGACGGTTCGCACGGTTTACTTGATCGCTCCTGACAAAAAGC TCAAGCTATCGCTCACCTACCCTGCCACCACCGGACGGAACTTCGACGAG GTCGAGGGGGCGAATGAATGCCAAAAAAAAACGTTTTTGAGAGAATTTTT TTAATGTGGTAGTTTTTGGAAATTACATGAACTTGAGGCAGTCAGCAATA ATATAATGTTGTAACTTTCGCGCAATTTTGATGGTGGTTGAAATATTTAA AAAAATTATCTACAGTACCAGCCATATGAAGAGTCCTCTTCTTTTTTTTT TCTTGAGTTGTGGAGGAACATGGCTGGTGGTTGTCTCGTTTTCCTACAGT ATTAGGGACTTGATATGAACACTGCCATATACATACGAGAGCGGTACAGC TATACTCATTGTGAAATGCAGTGGTCAACTTGACGTGCCAATCTCGTTAA GTACTGTGACCATACACACCCTCCCCACGCACCGGCGCCGCACGCTCTAT TCTGTTCTCTCCCTCGGTTTATTTTACGGAGAAAGCAGATCTTGCGCTGC ATTGACTCCATCCAGATGACTTCCACCCGTAGTCTTGCTACCCCGGCCGA CTGGACCACCGGAAGCGACTGCATGATCTTGCCCAGCGTTAGCGCCGAAG ATGCTACCGAGAAGTTTCCAGGGGTAGGTGGCAGTCATTCGCTTGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31837:1622..2371-

>mRNA_H-paniculata_contig31837.8575.1 ID=mRNA_H-paniculata_contig31837.8575.1|Name=mRNA_H-paniculata_contig31837.8575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig31837:1622..2371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCACCCTGAGCACAAGAACAAAGAAGGTCTTCCGCTGACGGTTCG
CACGGTTTACTTGATCGCTCCTGACAAAAAGCTCAAGCTATCGCTCACCT
ACCCTGCCACCACCGGACGGAACTTCGACGAGATGCTGCACCCTGAGCAC
AAGAACAAAGAAGGTCTTCCGCTGACGGTTCGCACGGTTTACTTGATCGC
TCCTGACAAAAAGCTCAAGCTATCGCTCACCTACCCTGCCACCACCGGAC
GGAACTTCGACGAGATCTTGCGCTGCATTGACTCCATCCAGATGACTTCC
ACCCGTAGTCTTGCTACCCCGGCCGACTGGACCACCGGAAGCGACTGCAT
GATCTTGCCCAGCGTTAGCGCCGAAGATGCTACCGAGAAGTTTCCAGGGG
TAGGTGGCAGTCATTCGCTTGTTTGAATCTTGCGCTGCATTGACTCCATC
CAGATGACTTCCACCCGTAGTCTTGCTACCCCGGCCGACTGGACCACCGG
AAGCGACTGCATGATCTTGCCCAGCGTTAGCGCCGAAGATGCTACCGAGA
AGTTTCCAGGGGTAGGTGGCAGTCATTCGCTTGTTTGA
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