mRNA_H-paniculata_contig3183.8573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3183.8573.1
Unique NamemRNA_H-paniculata_contig3183.8573.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A6H5L687_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L687_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.860e-45
Identity = 83/125 (66.40%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:    1 PLSRSSLIEGAASSTFTASIIAALAGAGGAAPAQAKGQRLKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            P+SR SL+E   S+T  AS  AAL  A   +PA AK +R+KGGGP++TLEDGA Y++MTIGDG +P +GDRVAVHYSL+Y GLE+ESSRDSQGLAARPLG+T GTV+GPGSVP GL+E + GM+V
Sbjct:   58 PISRRSLVE-RVSATLAAS--AALITAQ-PSPAAAKPERIKGGGPLVTLEDGASYREMTIGDGPSPKDGDRVAVHYSLFYKGLEVESSRDSQGLAARPLGYTVGTVNGPGSVPPGLDEIVKGMRV 178
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A4D9CYF4_9STRA (Peptidylprolyl isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYF4_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.300e-31
Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:   94 PAQAKGQRLKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            PA AKG +     P++ L  G +YQDM+IG GATP  GDRVAVHYSLYYNGLE+ESSRDS GLAARP GF +G+ SG GS+  G+   + GMQ+
Sbjct:   65 PAAAKGVKRLKNAPVVKLPSGVEYQDMSIGSGATPQLGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWGSGSGSGSICKGVQLGMEGMQI 158
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A836CDH4_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDH4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.060e-29
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   97 AQAKGQRLKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            A AK  R+K G P I L  G  YQDMT+GDG  P EGDRVA+HYSL+  G ++ESSR+S GLAARPLGF +GT +GPGSVP GL   + GM+V
Sbjct:   54 AGAKTTRVKDG-PKIALPSGVIYQDMTVGDGVIPREGDRVAIHYSLFCKGFQVESSRESSGLAARPLGFNYGTEAGPGSVPKGLQLGMEGMKV 145
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: R7QK44_CHOCR (Peptidylprolyl isomerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK44_CHOCR)

HSP 1 Score: 110 bits (274), Expect = 4.320e-28
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:   91 APAQAKGQRLKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            A A +K + L   GP +TL  G  Y+D++IG G TP  GD VA+HYSL++  LE+ESSR+SQGLAA P+GFTFG  SGPGS+  G++E ++GM+V
Sbjct:    8 AQALSKKRILAKAGPPVTLPSGITYRDISIGKGYTPRPGDSVAIHYSLFFKDLEVESSRESQGLAASPVGFTFGATSGPGSIMRGISEGMDGMKV 102
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A6T5QYZ8_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QYZ8_HETAK)

HSP 1 Score: 109 bits (272), Expect = 2.690e-27
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:   97 AQAKGQRLKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            A+AKG R     PI TLE+G +YQ+M IGDG +P +GDR A+HYS+YYNG+E+ESSRDS GLAA PLGF  G      +VP  L + I GMQV
Sbjct:   54 AEAKGSRRVKNAPIETLENGIKYQEMAIGDGPSPKKGDRCAIHYSIYYNGMEVESSRDSSGLAATPLGFNMGERFNR-NVPKSLQDAIYGMQV 145
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A2V3IEK3_9FLOR (Peptidylprolyl isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEK3_9FLOR)

HSP 1 Score: 107 bits (268), Expect = 1.780e-26
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:  130 GPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            GP++ L  G  Y+D+TIG G  P  GD VA+HYSL+Y  LE+ESSR+SQGLAA PLGFTFG  SGPGS+  G+   + GM+V
Sbjct:   85 GPLVELPSGVTYRDVTIGKGYEPRNGDTVAIHYSLFYKDLEVESSRESQGLAASPLGFTFGATSGPGSIMRGVTVGMEGMRV 166
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A7S0BNZ8_9RHOD (Peptidylprolyl isomerase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNZ8_9RHOD)

HSP 1 Score: 99.8 bits (247), Expect = 1.770e-23
Identity = 46/88 (52.27%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:  112 QRLKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            +RLK G P+ T +DG  Y+++  GDG +P++GD VA+HYSL+ +G+E+E+SR+SQGLAARPL FT+G   GPGS+  G+   ++GM+V
Sbjct:   67 KRLKMGPPVET-QDGVVYREIKTGDGYSPNQGDTVAIHYSLFCDGIEVETSRESQGLAARPLAFTWGVARGPGSILKGVPMGMDGMKV 153
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A5J4YNQ5_PORPP (Peptidylprolyl isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNQ5_PORPP)

HSP 1 Score: 99.0 bits (245), Expect = 1.230e-22
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  148 EDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            E G +++++T+G G  P +GD+VA+H+SL+YN LE+ESSR+SQGLAA P GFTFG  SGPGS   G+N  + GM+V
Sbjct:  138 ESGVRFREITVGSGIEPRDGDQVAIHFSLFYNDLEVESSRESQGLAASPYGFTFGRSSGPGSTVPGINIGMAGMKV 213
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BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A1X6P8Q2_PORUM (Peptidylprolyl isomerase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8Q2_PORUM)

HSP 1 Score: 98.6 bits (244), Expect = 1.600e-22
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  118 LKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            +K  GP  T+E+G +Y+++ IG G  P+ GD VA+HYSLY   +E+ESSR+SQGLAA PLGFT+G  +G G+V  G+N  ++GM+V
Sbjct:  123 MKKAGPEQTMENGIRYREVIIGKGFEPNSGDTVAIHYSLYCGDIEVESSRESQGLAASPLGFTYGAEAGAGAVLKGINLGMDGMKV 208
[Close]
BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Match: A0A7S2V053_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V053_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.860e-22
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   94 PAQAKGQRLKGGGPIITLEDGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLGFTFGTVSGPGSVPAGLNECINGMQV 375
            P +AK  R+K    +   E GAQ+QDMTIGDG  P  GDRV VH+SL+  G+EIES+RDSQGLAARP GF F    G   +P  +   + GM+V
Sbjct:  102 PGEAKPMRVKDAPRVDIGEKGAQFQDMTIGDGPEPKAGDRVVVHFSLFCKGIEIESTRDSQGLAARPYGFDFLVDGGAPRLPGIVPSALQGMRV 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3183.8573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L687_9PHAE1.860e-4566.40Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A4D9CYF4_9STRA3.300e-3160.64Peptidylprolyl isomerase n=1 Tax=Nannochloropsis s... [more]
A0A836CDH4_9STRA1.060e-2961.29Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
R7QK44_CHOCR4.320e-2854.74Peptidylprolyl isomerase n=1 Tax=Chondrus crispus ... [more]
A0A6T5QYZ8_HETAK2.690e-2758.06Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A2V3IEK3_9FLOR1.780e-2658.54Peptidylprolyl isomerase n=1 Tax=Gracilariopsis ch... [more]
A0A7S0BNZ8_9RHOD1.770e-2352.27Peptidylprolyl isomerase n=2 Tax=Rhodosorus marinu... [more]
A0A5J4YNQ5_PORPP1.230e-2256.58Peptidylprolyl isomerase n=1 Tax=Porphyridium purp... [more]
A0A1X6P8Q2_PORUM1.600e-2252.33Peptidylprolyl isomerase n=1 Tax=Porphyra umbilica... [more]
A0A7S2V053_9STRA4.860e-2252.13Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3183contigH-paniculata_contig3183:149..1506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue7.3e-36
Seed eggNOG ortholog2880.D8LJL8
KEGG koko:K01802
Hectar predicted targeting categorysignal peptide
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-17_002500.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929980.8513463-CDS-H-paniculata_contig3183:148..3091622929980.8513463-CDS-H-paniculata_contig3183:148..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 149..309 -
1691481096.2416973-CDS-H-paniculata_contig3183:148..3091691481096.2416973-CDS-H-paniculata_contig3183:148..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 149..309 -
1622929980.893885-CDS-H-paniculata_contig3183:1262..15061622929980.893885-CDS-H-paniculata_contig3183:1262..1506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 1263..1506 -
1691481096.255622-CDS-H-paniculata_contig3183:1262..15061691481096.255622-CDS-H-paniculata_contig3183:1262..1506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3183 1263..1506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3183.8573.1prot_H-paniculata_contig3183.8573.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3183 149..1506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3183.8573.1

>prot_H-paniculata_contig3183.8573.1 ID=prot_H-paniculata_contig3183.8573.1|Name=mRNA_H-paniculata_contig3183.8573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
PLSRSSLIEGAASSTFTASIIAALAGAGGAAPAQAKGQRLKGGGPIITLE
DGAQYQDMTIGDGATPHEGDRVAVHYSLYYNGLEIESSRDSQGLAARPLG
FTFGTVSGPGSVPAGLNECINGMQVVSAAGEIVD*
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mRNA from alignment at H-paniculata_contig3183:149..1506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3183.8573.1 ID=mRNA_H-paniculata_contig3183.8573.1|Name=mRNA_H-paniculata_contig3183.8573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1358bp|location=Sequence derived from alignment at H-paniculata_contig3183:149..1506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTTTCTCGCAGTTCCCTGATAGAGGGTGCGGCTTCGAGTACTTTCAC
GGCGTCGATCATCGCGGCGCTCGCGGGTGCCGGGGGGGCGGCGCCGGCGC
AGGCGAAAGGGCAGCGCCTGAAAGGCGGAGGTCCCATCATAACTCTGGAA
GACGGGGCTCAGTACCAGGACATGACAATTGGGGATGGAGCCACGCCGCA
CGAAGGGGACCGAGTCGCCGTACACTACTCGCTGTATTACAACGGTGAGG
AGTACAGCATGTTACGGAGAATTATGAATAGTGGAGAACTTTAATTTTTT
TCTTTTTCATTTTTCTGTTGTTTTGCAAATTAAGCGAGGTTTCATATATT
TATGAATATTGTGTACTTCCTCCGTGCCATAAGTAAAGTCGAATGTGTTT
CGCAGGTGGTACGTCCAGATTATAGACTGTTCAGAGGGGGTGCAGTTGGC
ATCCTCGAAAATCTGAAATCTGATAGACTTATATGCGCTATTCTAAAGAG
CGTTCCGATTTGTGTATCAGGATTAATGGTCGCTCAAAGTTGGCTTAAGT
TTGGCCATTTTCCACGTTTTTTTCGATTTTTCACGTTTTTCCATTGAGAA
AATACGAGAAGGGGAAAAATTGTGACCTTTTTCCGTCCAACATATATCAT
TTGCGCCGAGAACGCTCCCCATGGATTTTGCCAATTTTCGCGAAATTTGG
GATCAACCCCGAAAGCATGTGGGATTATAAGTAAAATAAGAATTAAAGGA
ACGGAGGTGATCAGGTGCCTGTGCCTCTATAAACTCAACCGACTTCACGT
ATGCCACAAAGGTCTCATGTATGTGTGTATGTCATTCTCTATGTAGAGCT
ATTGAAAGAAATATATTATAGTAATCAGGGTTACTTGTGTCTCGGATCTG
TTTGTGTGCTAATGCACTGTAGTAACGCGTAGTTATTATAGGCCAACGTC
TGTGGCGGAACTGCCAACCTCGCCCCGTTATGACCAAGTAGTGTACTGCA
GCAGCTATGATTTTTTGCGACGAGCTCAGGCACTCCTTCCTGCCCCAAAA
CGGTAGCCGCAGGTCTCAGGGTCGAGAGCTCTTGGGACTGACTGACTGTG
AGCCTCGCCACGATTCAGTCAAGTATTGCAGCAACCCTAGAAATTTGGCC
ACAAATTGAGGTAGATCCATTATTAAATAAAGCCAAAAACACCGCAGGTC
TCGAAATCGAAAGCTCGCGGGACAGCCAGGGCTTGGCGGCGCGGCCTTTG
GGCTTCACATTCGGTACCGTCAGCGGGCCTGGGAGCGTCCCGGCCGGCCT
CAACGAGTGCATCAATGGCATGCAAGTAGTGAGTGCAGCAGGAGAAATTG
TTGACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3183:149..1506-

>mRNA_H-paniculata_contig3183.8573.1 ID=mRNA_H-paniculata_contig3183.8573.1|Name=mRNA_H-paniculata_contig3183.8573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig3183:149..1506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTTTCTCGCAGTTCCCTGATAGAGGGTGCGGCTTCGAGTACTTTCAC
GGCGTCGATCATCGCGGCGCTCGCGGGTGCCGGGGGGGCGGCGCCGGCGC
AGGCGAAAGGGCAGCGCCTGAAAGGCGGAGGTCCCATCATAACTCTGGAA
GACGGGGCTCAGTACCAGGACATGACAATTGGGGATGGAGCCACGCCGCA
CGAAGGGGACCGAGTCGCCGTACACTACTCGCTGTATTACAACGCCGCTT
TCTCGCAGTTCCCTGATAGAGGGTGCGGCTTCGAGTACTTTCACGGCGTC
GATCATCGCGGCGCTCGCGGGTGCCGGGGGGGCGGCGCCGGCGCAGGCGA
AAGGGCAGCGCCTGAAAGGCGGAGGTCCCATCATAACTCTGGAAGACGGG
GCTCAGTACCAGGACATGACAATTGGGGATGGAGCCACGCCGCACGAAGG
GGACCGAGTCGCCGTACACTACTCGCTGTATTACAACGGTCTCGAAATCG
AAAGCTCGCGGGACAGCCAGGGCTTGGCGGCGCGGCCTTTGGGCTTCACA
TTCGGTACCGTCAGCGGGCCTGGGAGCGTCCCGGCCGGCCTCAACGAGTG
CATCAATGGCATGCAAGTAGTGAGTGCAGCAGGAGAAATTGTTGACTGAG
TCTCGAAATCGAAAGCTCGCGGGACAGCCAGGGCTTGGCGGCGCGGCCTT
TGGGCTTCACATTCGGTACCGTCAGCGGGCCTGGGAGCGTCCCGGCCGGC
CTCAACGAGTGCATCAATGGCATGCAAGTAGTGAGTGCAGCAGGAGAAAT
TGTTGACTGA
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