mRNA_H-paniculata_contig318.8565.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig318.8565.1
Unique NamemRNA_H-paniculata_contig318.8565.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig318.8565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig318contigH-paniculata_contig318:268..3842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.1712782-CDS-H-paniculata_contig318:269..4131622929979.1712782-CDS-H-paniculata_contig318:269..413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig318 270..413 -
1691481095.6196635-CDS-H-paniculata_contig318:269..4131691481095.6196635-CDS-H-paniculata_contig318:269..413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig318 270..413 -
1622929979.1854355-CDS-H-paniculata_contig318:3752..38421622929979.1854355-CDS-H-paniculata_contig318:3752..3842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig318 3753..3842 -
1691481095.628393-CDS-H-paniculata_contig318:3752..38421691481095.628393-CDS-H-paniculata_contig318:3752..3842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig318 3753..3842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig318.8565.1prot_H-paniculata_contig318.8565.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig318 270..3842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig318.8565.1

>prot_H-paniculata_contig318.8565.1 ID=prot_H-paniculata_contig318.8565.1|Name=mRNA_H-paniculata_contig318.8565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
GRGTGGGGGDTSAATLSAAEKSAMLKRMILGEGGSGGGGLFGGGGGSTQH
PTQSNRQRDNNSNGTQQQLSGGGGGGAG
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mRNA from alignment at H-paniculata_contig318:268..3842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig318.8565.1 ID=mRNA_H-paniculata_contig318.8565.1|Name=mRNA_H-paniculata_contig318.8565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3575bp|location=Sequence derived from alignment at H-paniculata_contig318:268..3842- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGAGGCACCGGCGGGGGCGGGGGTGATACCTCAGCGGCAACGCTATC
TGCAGCCGAGAAGAGCGCCATGCTGAAGCGGATGATTTTGGTGAGATTTT
GGTGTTTTCTGATGAAGGGTGAAAGGGGATGGATTTTGAGGTTGTGCAGC
TGACCTCAAGCTTCAGTTGTGTACACTTATTGGCAAAGTTAGATCAAGAG
GAGTCGGGGGGGGGGCCGGGGGGGGGGCCGGGGGCGGAGCCATTCTAACA
GGAGAACCGTGCTAAAGTGATCACAGGGTCTATTAATCTGTCAAATTCCA
AGGTGTTCCAAGCTTGAACTAGAGTCGCGGTTACACTCGTGGTAGATCGT
CGCTACGCTCGCGTAAATATTCATTTTTCAGGAGTTACATGAGTATAGAT
TTTGGAAAGCTGTTCCGAAATGAGGGACCACGAACTTATCCCTTGCAGCG
CCATTTAATCCTTATAGTGGGAACATGCCTCGGAAAATATATTTTGTGGG
ATCTGTTTTTTGGCCATTTGTTTCGATCCAAAAGGCGTTAGTTATTTTTT
ATTTTATTTTTTTTACTCCCGGAAGGCTAAGGCAAAAATCTTTATCCGAT
GCTTCCATACCAAAGTATTTCTACCGAAGTATTTCTACATTTCCTTTAAC
AGAATAGAGTTATTTATTCCTCTGCGGAGTAGGCGCCACCCCGGTTCGGC
CGAACCAAGTAGGCAGTGTGGGGGTTGCACCCAGTAAAAGACCTCTGACT
TGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGGCGTA
GGTCCGTGGAGGCGTTAGCTATATGCTGGAAAATAACGAACAGGCGGTGT
ACAAGCAAGGGAGTGATCAATCTCCAATTCTGTCTAGGATGAGGATCAGT
TTATTCTTCGGCATCCTTCCCCCCCCCCTGCCGAAAGAGGTTATCTTGCG
GCCCTGAAGAGGTTAAGGGGCTGTTTTGAAAGAACAAATGCATCTGACAA
GAACTATCAAGGCCGTAGTCATGAGCATGAAGAACCATGGCAAGTACCTG
TCTGTGCTGTATGTACTGGACTGTCTGTCTGAGCAGCGGCGATCCCCTAC
TCCCGTCATGATGGCATAGGGCATGCATGGGGCATAATAGACGTAGTATT
ACAGTTTGTTTTTGGGAACAATCATCATTCTCACGGTATCACAATATTTC
TTCCACATACTTGGTGTTCTTACTACAGTTATTACGGAGGCACTTTGTTC
GCGAAAATTTGTTGCTCTACTCTGGGGCGAAAGTCTGAGCCCGTTCCACC
CACCCAACTTGCGGAGCCGAAATGTGTAGGACCCTCTCAATCACGCGGCG
TTCACCCACGTTAAGGTTTTCGATTTAACCCAGATACACCTAGTTGAATG
GAGGGACACGGTGAGAAAGAGCAACAAGTTGGTGCTACTGGCCAATGTGC
CTCCGGTAAAGTGTCACAATATCTCAAGCCCCCAAATAGTCCATAGTGTT
ACAAGTTGTATTGTACTACCAAGTGTGTGAATCGTGCCGATACTCAACCA
TACCAGCGACCGATTTTGACGAGACCTGTCCAATATCTCATGAATTTATT
TACATCCAAGATAGAATGTTTTCGAAAATGAATATTTGTTTTTGTAGATT
TTGGTTCGGCCGTTTAGGGCTTCGTAGTGAGCTGTACATCCCGGACTCCA
CTCCACGTGCAACAACGTCTTGCTATCAAAAACGAACTCCTTTTCACGAG
CCATCAGATTTCGTCAAAACTCGCGAAATTTCCAATATTTGAAAAAAAAA
AAAATCCCTTTGTATCGCGAAGTTGGCGCAGGTATACTGGGGTTCGATAT
GTGAAGCTCACCTAGTAGCCATATATGACGACTAAATTGATATTACGAAC
AGATATGTGTGTTTCCAAAACACTGTAGTATTTAGCTCCTAGCCCTACTA
TGTGCACCCCGGTAGTTTCACAAAAGGGACCAAACGTAGTGACGGGGAGC
GAGTGTCGTGGAGCGAGCCGGGGCGTATCTACTAAAACTGGATAGGTTAG
CATGGCCCCTCGCAAGTTGTTCATTGACATGAACTGCAATATTCAAAGTT
TCGAGTTGCGTCCAATTTAAACGTATGTTAAAGATGAAATCCCAGGATCA
ATCACTGGCTGAAGCAGGCATATTTGTCCGTGTTTGATGCTGCTGGATGT
GACTGACAAAAGGTTGGGCGGTTACATAATAATATAGTAATAGTAGTAGT
AGTAGTAGCTGTCATGATCCAGTGACTCCAATAGCGTACCTAACTTAGCC
CCGTCGTCCCCCTCCCACGTGACCGCCATCATCATCACACGTTTCACGTT
GGCGTGTTCTATACTAGTCATTGAGACACATACGGCTACGCGCGTGCAGT
CCGTCTTTGCCCTTGTGCCTATTTGGTCATTATCCAAAATCCATGACTCA
AGCAACGACGGCTCGCTGCGGTCGGATTTAGGCGCATGTCGATAAACATT
CCACACGTCGGACAGAGCAGAACAGAACAGAAGGAATTGCCGGAGCTAGC
GTACCACTGAGCAAACAGAACGTGCTATTCTGCTCTGTCTATTTAACTCG
GCAAAAGGGCAGCGATTTTCTGACCTCCCTCTGGTTTGCGACGAACGCTC
TTCCCATTTGCATGAGATCCGAATTCGACAGCGACGAGGATACTGTCGTG
TGCGATATGTGCGTAGAAGACGCCAAAAGTTGATATTTTTTTGCGGAATC
TGTTCTGTCTGAGGCGTGTGGAAGATTCGTTGCTTTTGGAAGTTTTTTTC
TTCTGCAGACGTCGAGAACTGTTTCGAAATCGCTATCTTCATCATCATCA
CCATATATTGTTCATTCGTAGGGACTTGCACACGTGGGAATGCTCTGACC
GCCGGTATAATGATTATTCAGACATGCGTTTTTCGGGAAGGCTTTTCCTC
TTGTCCCTGGAGACCGGGCTGGGTTATATTTATAACTGTGTCTGCTTGTG
TGGATGGGTGTTTCCCCTCGAGTCTTCGGATGGCCTTCATATCCTCATTT
CTGAATATAGCAGAGTGGTGGTGGTGGTGGTGGTCATGGTGGTATCCGTC
GCTGTGGAACAGCTTTTCAATTCTGTGTACTCGAGTGACTCCTGAACAAC
GAAGCTTCAAGCAAGCGAAGCGAGTCCGCGATTTGAGGATATGCAGGAAT
TACAAAAGGGCTAGCCATGGCTCTACTGCTGCAGTCGCACGTATATATTA
TTATTTTCAAGAGTACAATGTACAGCCGTGTATTTGTAGCGGTTGTCGGC
ATGTACAGTAGGACAAAGGACAGCAGCGCATAAACAAGGAAGGGCACGAA
TTCATAACTGATCGCCTAGCACGACCGAGGTGTAACCGTGATAATCACCG
CCGTGACCTCCTTATTTTGGCGCGTTCAGGGAGAAGGAGGCAGCGGAGGC
GGTGGTTTATTTGGCGGCGGCGGCGGATCGACCCAACACCCGACCCAAAG
CAACCGTCAGCGAGACAATAATAGCAATGGAACCCAGCAGCAGCTGTCGG
GAGGGGGCGGTGGAGGTGCAGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig318:268..3842-

>mRNA_H-paniculata_contig318.8565.1 ID=mRNA_H-paniculata_contig318.8565.1|Name=mRNA_H-paniculata_contig318.8565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig318:268..3842- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGAGGCACCGGCGGGGGCGGGGGTGATACCTCAGCGGCAACGCTATC
TGCAGCCGAGAAGAGCGCCATGCTGAAGCGGATGATTTTGGGGAGAGGCA
CCGGCGGGGGCGGGGGTGATACCTCAGCGGCAACGCTATCTGCAGCCGAG
AAGAGCGCCATGCTGAAGCGGATGATTTTGGGAGAAGGAGGCAGCGGAGG
CGGTGGTTTATTTGGCGGCGGCGGCGGATCGACCCAACACCCGACCCAAA
GCAACCGTCAGCGAGACAATAATAGCAATGGAACCCAGCAGCAGCTGTCG
GGAGGGGGCGGTGGAGGTGCAGGCGGAGAAGGAGGCAGCGGAGGCGGTGG
TTTATTTGGCGGCGGCGGCGGATCGACCCAACACCCGACCCAAAGCAACC
GTCAGCGAGACAATAATAGCAATGGAACCCAGCAGCAGCTGTCGGGAGGG
GGCGGTGGAGGTGCAGGC
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