mRNA_H-paniculata_contig31780.8560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31780.8560.1
Unique NamemRNA_H-paniculata_contig31780.8560.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: D7G1U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U8_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.730e-25
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGRNGLESCSC+YGNPCVDEYGCKDWHSRYAVAKANGWKGF
Sbjct:  349 DDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 390
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: A0A6H5JDM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.770e-24
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGRNGLESCSC+YGNPCVDEYGCK+WHSRYAVAKANGWKGF
Sbjct:  298 DDGRNGLESCSCVYGNPCVDEYGCKNWHSRYAVAKANGWKGF 339
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: G4Z5C2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z5C2_PHYSP)

HSP 1 Score: 87.4 bits (215), Expect = 9.070e-21
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGR G ESCSCIYGNPCVDEYGC+DWHSR+AVA  NGWKGF
Sbjct:  115 DDGR-GFESCSCIYGNPCVDEYGCRDWHSRFAVATKNGWKGF 155
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: A0A8K1C6C9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6C9_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 2.210e-20
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGR G ESCSCIYGNPCVDEYGCKDWHSR+A+A ANGWKGF
Sbjct:  298 DDGR-GFESCSCIYGNPCVDEYGCKDWHSRFAIATANGWKGF 338
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: A0A7S0SXS3_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXS3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.310e-20
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGR  +ESCSCIYGNPCVDEYGCKDW++RYA+AKANGWKGF
Sbjct:  155 DDGRV-IESCSCIYGNPCVDEYGCKDWNNRYAIAKANGWKGF 195
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: H3HB52_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB52_PHYRM)

HSP 1 Score: 84.7 bits (208), Expect = 1.040e-19
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGR G E+CSCIYGNPCVDEYGC+DWHSR AVA  NGWKGF
Sbjct:  115 DDGR-GFETCSCIYGNPCVDEYGCRDWHSRLAVATKNGWKGF 155
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: K3WKZ6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKZ6_GLOUD)

HSP 1 Score: 87.8 bits (216), Expect = 1.090e-19
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGR G ESCSC+YGNPCVDEYGC+DWH+R+AVA ANGWKGF
Sbjct:  264 DDGR-GFESCSCVYGNPCVDEYGCRDWHARFAVATANGWKGF 304
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: W2RJ32_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RJ32_PHYPN)

HSP 1 Score: 87.0 bits (214), Expect = 1.510e-19
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    4 DDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DDGR G ESCSCIYGNPCVDEYGC+DWHSR+A+A  NGWKGF
Sbjct:  239 DDGR-GFESCSCIYGNPCVDEYGCRDWHSRFAIATKNGWKGF 279
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: A0A833WVH3_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WVH3_PHYIN)

HSP 1 Score: 85.1 bits (209), Expect = 1.790e-19
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    7 DGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DGR G ESCSC+YGNPCVDEYGC+DWHSR+AVA  NGWKGF
Sbjct:  155 DGR-GFESCSCVYGNPCVDEYGCRDWHSRFAVATKNGWKGF 194
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BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Match: A0A662YFV4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFV4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.110e-19
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    7 DGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF 129
            DGR G ESCSCIYGNPCVDEYGC+DWHSR+AVA  NGWKGF
Sbjct:  201 DGR-GFESCSCIYGNPCVDEYGCRDWHSRFAVATKNGWKGF 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31780.8560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U8_ECTSI9.730e-2597.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDM1_9PHAE2.770e-2495.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4Z5C2_PHYSP9.070e-2185.71Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A8K1C6C9_PYTOL2.210e-2088.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0SXS3_9STRA2.310e-2085.71Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
H3HB52_PHYRM1.040e-1983.33Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
K3WKZ6_GLOUD1.090e-1983.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2RJ32_PHYPN1.510e-1983.33Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A833WVH3_PHYIN1.790e-1982.93Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A662YFV4_9STRA3.110e-1985.37Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31780contigH-paniculata_contig31780:819..950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue5.3e-20
Seed eggNOG ortholog2880.D7G1U8
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2B80G@1,2S0QQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004050.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.8240647-CDS-H-paniculata_contig31780:818..9501622929978.8240647-CDS-H-paniculata_contig31780:818..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31780 819..950 +
1691481095.4942992-CDS-H-paniculata_contig31780:818..9501691481095.4942992-CDS-H-paniculata_contig31780:818..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31780 819..950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31780.8560.1prot_H-paniculata_contig31780.8560.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31780 819..950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31780.8560.1

>prot_H-paniculata_contig31780.8560.1 ID=prot_H-paniculata_contig31780.8560.1|Name=mRNA_H-paniculata_contig31780.8560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MDDGRNGLESCSCIYGNPCVDEYGCKDWHSRYAVAKANGWKGF*
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mRNA from alignment at H-paniculata_contig31780:819..950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31780.8560.1 ID=mRNA_H-paniculata_contig31780.8560.1|Name=mRNA_H-paniculata_contig31780.8560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig31780:819..950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACGGCCGCAACGGACTGGAGAGCTGCTCCTGCATCTACGGAAA
CCCTTGCGTAGATGAATACGGGTGCAAGGACTGGCATTCGCGTTATGCGG
TAGCGAAAGCAAATGGGTGGAAAGGGTTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig31780:819..950+

>mRNA_H-paniculata_contig31780.8560.1 ID=mRNA_H-paniculata_contig31780.8560.1|Name=mRNA_H-paniculata_contig31780.8560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig31780:819..950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACGGCCGCAACGGACTGGAGAGCTGCTCCTGCATCTACGGAAA
CCCTTGCGTAGATGAATACGGGTGCAAGGACTGGCATTCGCGTTATGCGG
TAGCGAAAGCAAATGGGTGGAAAGGGTTCTAAATGGACGACGGCCGCAAC
GGACTGGAGAGCTGCTCCTGCATCTACGGAAACCCTTGCGTAGATGAATA
CGGGTGCAAGGACTGGCATTCGCGTTATGCGGTAGCGAAAGCAAATGGGT
GGAAAGGGTTCTAA
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