mRNA_H-paniculata_contig3178.8557.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig3178.8557.1
Unique Name	mRNA_H-paniculata_contig3178.8557.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: D7FVA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA3_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.470e-58
Identity = 127/233 (54.51%), Postives = 149/233 (63.95%), Query Frame = 1

Query:    1 SLLESNVKILEDKCHVRKIILEAAKAKAGNLYLGLDISTQNTGYTVLAPA-ATESTTAD--VDDDT--ADDEAFLRERLGARLVEWGCIVGSGKRARDKKDVVDVGIIIEERLREVAERCSGSRGENETRATEAVQESERRA-SGSEDEGRGK-GDTNSE--------GPVWVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGLLSNK 654
            SLLESNV ILE  C V ++ ++AA ++  NLYLGLDISTQ+TGY VL P+ AT S      + DD   AD    LRE   A LVEWGCI G+G   + K D +DVGII+EE L +VAERC  S G     A+    E E    SG   +G  K GD   +        G VWVVGVEDFMRRFLPG+SNA+SIFALAQLNGI+ YAC K+LG KA +FHPS  RSFY L  NK
Sbjct:   61 SLLESNVNILEQDCKVAQLFVDAAASRKDNLYLGLDISTQSTGYAVLRPSTATMSNLGGHCLSDDVSHADRPGLLREMGEANLVEWGCISGNGSDGK-KGDEIDVGIIVEEVLVQVAERCVRSTGGKAPAASVTTSELEESVGSGCAVKGYKKTGDAGDDLQPEADDKGRVWVVGVEDFMRRFLPGRSNAKSIFALAQLNGIIKYACHKHLGVKANSFHPSTPRSFYSLTKNK 292

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: A0A024G3P8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G3P8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.010e-11
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:  466 VWVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            VW +G+EDFMR F+ G+ + + +  LAQLNGIV Y+C K   AK + +HP+ ARSF+GL
Sbjct:  623 VWRIGIEDFMRTFVAGRFHTKGLIQLAQLNGIVSYSCWKNFDAKPKHYHPTLARSFFGL 681

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: A0A484DU82_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DU82_BRELC)

HSP 1 Score: 70.9 bits (172), Expect = 6.070e-11
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  469 WVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            W +G+E FMR FL G+ N   IF LAQLNGIV YAC K  G      HPS ARSF+GL
Sbjct:  101 WTIGIEAFMRMFLSGRFNNAGIFQLAQLNGIVSYACWKRFGVLPLHTHPSAARSFFGL 158

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: F0W5Y2_9STRA (Uncharacterized protein AlNc14C22G2290 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5Y2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-10
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1

Query:  466 VWVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            VW +G+EDFMR F+ G+ + + +  LAQLNGIV Y+C +   AK   +HP+ ARS++GL
Sbjct:  106 VWFIGIEDFMRAFVAGRFHTKGLIQLAQLNGIVSYSCWQNFDAKPTHYHPTLARSYFGL 164

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: A0A0P1AWW1_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWW1_PLAHL)

HSP 1 Score: 67.0 bits (162), Expect = 1.360e-9
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1

Query:  469 WVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGLLSN 651
            W+VG+E FMR F  G+ +   IF LAQLNGIV +AC K  G+     HPS ARSF+GL ++
Sbjct:  101 WIVGIEAFMRMFRSGRYHNAGIFQLAQLNGIVSFACWKRFGSLPLHTHPSAARSFHGLCTS 161

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: A0A6A4CR17_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CR17_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.700e-9
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  469 WVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            WVVG+E FMR F  G+ +   IF LAQLNGIV YAC +   A     HPS ARSF+GL
Sbjct:  107 WVVGIEAFMRMFRSGRFHNAGIFQLAQLNGIVSYACWRRFDALPLHTHPSAARSFFGL 164

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: A0A662WXG8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXG8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.610e-9
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1

Query:  457 EGPVWVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            +G  W+VG+E FMR F  G+ +   IF LAQLNGIV YAC K   A     HPS AR F+GL
Sbjct:  107 QGTEWLVGIEAFMRLFRVGQFHNAGIFQLAQLNGIVSYACWKRFEALPTHTHPSAARGFFGL 168

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: A0A329SM58_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SM58_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.250e-9
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 1

Query:  469 WVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            WVVG+E FMR F  G+ +   IF LAQLNGIV +AC K   A     HPS AR F+GL
Sbjct:   86 WVVGIEAFMRMFRSGRFHNAGIFQLAQLNGIVSFACWKRFSALPLHTHPSAARGFFGL 143

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: A0A225WUU9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUU9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.840e-9
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 1

Query:  469 WVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            WVVG+E FMR F  G+ +   IF LAQLNGIV +AC K   A     HPS AR F+GL
Sbjct:  100 WVVGIEAFMRMFRSGRFHNAGIFQLAQLNGIVSFACWKRFNALPLHTHPSAARGFFGL 157

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BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Match: G4YM71_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YM71_PHYSP)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-8
Identity = 32/58 (55.17%), Postives = 36/58 (62.07%), Query Frame = 1

Query:  469 WVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKAEAFHPSRARSFYGL 642
            WVVG+E FMR F  G+ +   IF LAQLNGIV YAC K         HPS AR F+GL
Sbjct:  106 WVVGIEAFMRMFRSGRFHNAGIFQLAQLNGIVSYACWKRFDVLPLHTHPSAARGFFGL 163

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig3178.8557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
D7FVA3_ECTSI	1.470e-58	54.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A024G3P8_9STRA	3.010e-11	52.54	Uncharacterized protein n=1 Tax=Albugo candida Tax...	[more]
A0A484DU82_BRELC	6.070e-11	58.62	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
F0W5Y2_9STRA	1.050e-10	49.15	Uncharacterized protein AlNc14C22G2290 n=1 Tax=Alb...	[more]
A0A0P1AWW1_PLAHL	1.360e-9	52.46	Uncharacterized protein n=1 Tax=Plasmopara halsted...	[more]
A0A6A4CR17_9STRA	2.700e-9	56.90	Uncharacterized protein n=3 Tax=Phytophthora TaxID...	[more]
A0A662WXG8_9STRA	5.610e-9	53.23	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
A0A329SM58_9STRA	8.250e-9	55.17	Uncharacterized protein n=2 Tax=Phytophthora TaxID...	[more]
A0A225WUU9_9STRA	8.840e-9	55.17	Uncharacterized protein n=1 Tax=Phytophthora megak...	[more]
G4YM71_PHYSP	1.290e-8	55.17	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig3178	contig	H-paniculata_contig3178:359..1862 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	203.0
Seed ortholog evalue	1.4e-49
Seed eggNOG ortholog	2880.D7FVA3
Hectar predicted targeting category	other localisation
EggNOG OGs	2C0HS@1,2RXFR@2759
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-14_000340.1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	3
Model size	654
Cds size	654
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig3178.8557.1	prot_H-paniculata_contig3178.8557.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig3178 359..1862 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929978.3252597-CDS-H-paniculata_contig3178:358..430	1622929978.3252597-CDS-H-paniculata_contig3178:358..430	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3178 359..430 -
1691481095.2447119-CDS-H-paniculata_contig3178:358..430	1691481095.2447119-CDS-H-paniculata_contig3178:358..430	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3178 359..430 -
1622929978.343837-CDS-H-paniculata_contig3178:859..1053	1622929978.343837-CDS-H-paniculata_contig3178:859..1053	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3178 860..1053 -
1691481095.2537863-CDS-H-paniculata_contig3178:859..1053	1691481095.2537863-CDS-H-paniculata_contig3178:859..1053	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3178 860..1053 -
1622929978.379776-CDS-H-paniculata_contig3178:1474..1862	1622929978.379776-CDS-H-paniculata_contig3178:1474..1862	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3178 1475..1862 -
1691481095.267929-CDS-H-paniculata_contig3178:1474..1862	1691481095.267929-CDS-H-paniculata_contig3178:1474..1862	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig3178 1475..1862 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig3178:359..1862-
coding sequence from alignment at H-paniculata_contig3178:359..1862-

protein sequence of mRNA_H-paniculata_contig3178.8557.1

>prot_H-paniculata_contig3178.8557.1 ID=prot_H-paniculata_contig3178.8557.1|Name=mRNA_H-paniculata_contig3178.8557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
SLLESNVKILEDKCHVRKIILEAAKAKAGNLYLGLDISTQNTGYTVLAPA
ATESTTADVDDDTADDEAFLRERLGARLVEWGCIVGSGKRARDKKDVVDV
GIIIEERLREVAERCSGSRGENETRATEAVQESERRASGSEDEGRGKGDT
NSEGPVWVVGVEDFMRRFLPGKSNARSIFALAQLNGIVMYACQKYLGAKA
EAFHPSRARSFYGLLSNK

mRNA from alignment at H-paniculata_contig3178:359..1862-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig3178.8557.1 ID=mRNA_H-paniculata_contig3178.8557.1|Name=mRNA_H-paniculata_contig3178.8557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1504bp|location=Sequence derived from alignment at H-paniculata_contig3178:359..1862- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCTTTTGGAGTCTAACGTGAAGATCCTGGAGGATAAATGCCACGTACG
AAAAATAATTCTCGAAGCTGCCAAAGCGAAAGCGGGAAATCTATATCTGG
GACTGGACATCAGCACTCAAAATACGGGATACACCGTGCTAGCACCAGCA
GCAACCGAATCTACAACAGCAGACGTTGATGATGATACTGCCGACGATGA
GGCGTTCTTGCGAGAGCGGTTAGGGGCTAGACTAGTGGAGTGGGGATGCA
TCGTTGGGTCCGGCAAGCGGGCTAGGGACAAGAAGGACGTCGTGGATGTT
GGAATCATCATTGAGGAGAGGCTCAGGGAGGTGGCCGAAAGATGTTCGGG
CAGTCGTGGGGAAAACGAGACCCGGGCTACTGAAGCAGGTGTGCCAGAAT
TAAAGCAAATTCAGATGATGTATGCATATCTAGCATTTGGTGTACTAATT
GTTTATCGTATCGAATTCTGTCTTGTCATAAGAACGATAAAGATATCACC
GTTAGAACTAGTTGCAGGTTAGCCTGCAAGTGGGTATTATTGTCTACAAT
GCTTCAATTATTCGTGCCCACCTGTGCTTTTCGGTTGACTACTTGGGTGA
TAGAGGAGTGGGCTAGGCTAGGATGAGCTAAGATGTGTGTGAAGGGATTG
TTAGCACCGAGAGGTGTGAGTTCGAGGCATGATGCCAGGTTTACGACAAC
GCTATCTTTTCGGGGCTGATATAACCATACCGAATTGTTTCGTTTTGAAG
AAGAAGTTGTTGATGTCCCCCGTGCATCATTGGTTTGATAATTGTATTTG
TAGGGCTAGTCCAGGAGTCGGAGAGGAGAGCGAGTGGATCTGAAGATGAG
GGTAGGGGAAAGGGAGATACAAACTCAGAGGGCCCTGTGTGGGTGGTGGG
CGTAGAGGATTTTATGCGAAGGTTCTTACCGGGGAAGTCTAACGCCAGGT
CCATATTCGCGCTGGCGCAGCTGAACGGTATCGTCATGTACGCTTGCCAA
AAGGTATATATTGCGGGGAAGGAGAAAATAATAAGGAGTAAAGTAGCCAC
CCTATCAACAGTCTAGCTTGCCTGTTTATTGCTAGGCTTGGATGGTCGCC
TCAAAAAATAGTGGGATGTCGTCCATTATATTTTAGAAGCACGTGATTGA
TTCCCAGTACAAGTCATTTTCTGCCGGATTTTGCTGCCTTCGACGCCTGG
TATGGTCGTTAAGCTGTTTCTGTTCGACTTATCGTAGTCCTATCTGAACA
TGCCTACTGGACTAAATATAGTGTATCTATCTATCTCATGCCATATTTAT
GGCGCTGTGTGTGTTCGAGTACATTATACATTGGTCATCGTTGACCCGCA
ACGTTTTTTTCATTGCTTGCCCTTTGCCCATCGACCCCTACATCCATGTC
CACCTTGTGTTGGTTGACTTGATGATGTTCAGTACTTGGGCGCTAAGGCC
GAGGCGTTCCACCCGTCAAGAGCTAGATCGTTCTATGGCCTCCTATCCAA
CAAG

Coding sequence (CDS) from alignment at H-paniculata_contig3178:359..1862-

>mRNA_H-paniculata_contig3178.8557.1 ID=mRNA_H-paniculata_contig3178.8557.1|Name=mRNA_H-paniculata_contig3178.8557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig3178:359..1862- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCTTTTGGAGTCTAACGTGAAGATCCTGGAGGATAAATGCCACGTACG
AAAAATAATTCTCGAAGCTGCCAAAGCGAAAGCGGGAAATCTATATCTGG
GACTGGACATCAGCACTCAAAATACGGGATACACCGTGCTAGCACCAGCA
GCAACCGAATCTACAACAGCAGACGTTGATGATGATACTGCCGACGATGA
GGCGTTCTTGCGAGAGCGGTTAGGGGCTAGACTAGTGGAGTGGGGATGCA
TCGTTGGGTCCGGCAAGCGGGCTAGGGACAAGAAGGACGTCGTGGATGTT
GGAATCATCATTGAGGAGAGGCTCAGGGAGGTGGCCGAAAGATGTTCGGG
CAGTCGTGGGGAAAACGAGACCCGGGCTACTGAAGCAGAGCCTTTTGGAG
TCTAACGTGAAGATCCTGGAGGATAAATGCCACGTACGAAAAATAATTCT
CGAAGCTGCCAAAGCGAAAGCGGGAAATCTATATCTGGGACTGGACATCA
GCACTCAAAATACGGGATACACCGTGCTAGCACCAGCAGCAACCGAATCT
ACAACAGCAGACGTTGATGATGATACTGCCGACGATGAGGCGTTCTTGCG
AGAGCGGTTAGGGGCTAGACTAGTGGAGTGGGGATGCATCGTTGGGTCCG
GCAAGCGGGCTAGGGACAAGAAGGACGTCGTGGATGTTGGAATCATCATT
GAGGAGAGGCTCAGGGAGGTGGCCGAAAGATGTTCGGGCAGTCGTGGGGA
AAACGAGACCCGGGCTACTGAAGCAGTCCAGGAGTCGGAGAGGAGAGCGA
GTGGATCTGAAGATGAGGGTAGGGGAAAGGGAGATACAAACTCAGAGGGC
CCTGTGTGGGTGGTGGGCGTAGAGGATTTTATGCGAAGGTTCTTACCGGG
GAAGTCTAACGCCAGGTCCATATTCGCGCTGGCGCAGCTGAACGGTATCG
TCATGTACGCTTGCCAAAAGTCCAGGAGTCGGAGAGGAGAGCGAGTGGAT
CTGAAGATGAGGGTAGGGGAAAGGGAGATACAAACTCAGAGGGCCCTGTG
TGGGTGGTGGGCGTAGAGGATTTTATGCGAAGGTTCTTACCGGGGAAGTC
TAACGCCAGGTCCATATTCGCGCTGGCGCAGCTGAACGGTATCGTCATGT
ACGCTTGCCAAAAGTACTTGGGCGCTAAGGCCGAGGCGTTCCACCCGTCA
AGAGCTAGATCGTTCTATGGCCTCCTATCCAACAAGTACTTGGGCGCTAA
GGCCGAGGCGTTCCACCCGTCAAGAGCTAGATCGTTCTATGGCCTCCTAT
CCAACAAG