mRNA_H-paniculata_contig3177.8554.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3177.8554.1
Unique NamemRNA_H-paniculata_contig3177.8554.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JCZ9_9PHAE (HTH CENPB-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.680e-26
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:  139 AVKRKEVTIRIAALKFQVSPTSIAIRIA------ARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            AV+   ++   AA  F +S TS+  R++      AR G  TVLT EEE A+ED+L+YA RN + +TR  L E VR+LCNDG  +PWDP KGPGK+    F +RH R++LR +RIYE
Sbjct:   17 AVRNGSMSRYAAAAAFGLSKTSLLRRLSGECDMDARVGHGTVLTKEEENALEDVLLYAGRNYIPLTRNDLKERVRRLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYE 132
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JTL4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.440e-26
Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:  139 AVKRKEVTIRIAALKFQVSPTSIAIRIA------ARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            AV+   ++   AA  F +S TS+  R++      AR G  TVLT EEE A+ED+L+YA RN + +TR  L E VRQLCNDG  +PWDP KGPGK+    F +RH R++LR +RIYE
Sbjct:   17 AVRNGSMSRYAAAAAFGLSKTSLLRRLSGECDMDARVGHGTVLTKEEENALEDVLLYACRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYE 132
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.840e-24
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:  157 VTIRIAALKFQVSPTSIAIR------IAARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            +++R AA  F V  TSI  R      + A+ G+ T+L+ EEE ++ED+L++A RN L + R  L + VR+LCNDG ++PWDP KGPGK   A F +RHPR+A RS+RIYE
Sbjct:   22 MSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYE 131
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BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.000e-23
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:  136 EAVKRKEVTIRIAALKFQVSPTSIAIRIA------ARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            EAV+   +++R AA  + V+  S++ R+       A+ G  TVLT EEE+ +ED L+YA R+ +GI R  L E+VRQLCNDG  +PWD   GPG++    FFKRHP L+ RS+RIYE
Sbjct:   16 EAVRSGAMSLRAAAQAYGVNKRSLSRRLTGDESMDAKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYE 132
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JLA4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.090e-23
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:  139 AVKRKEVTIRIAALKFQVSPTSIAIRIA------ARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            AV+   ++   AA  F ++ TS+  R++      AR G  TVL  EEE A+ED+L+YA RN + +TR  L E VRQLCNDG  +PWDP KGPGK+    F +R+ R++LR +RIYE
Sbjct:   17 AVRNGSMSRYAAAAAFGLTKTSLLRRLSGECDIDARVGHGTVLMKEEENALEDVLLYAGRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRYDRISLRLARIYE 132
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JHD1_9PHAE (HTH psq-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.750e-22
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:  136 EAVKRKEVTIRIAALKFQVSPTSIAIRIA------ARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            EAV+   ++    A  + V+ TS++ R++      AR G  TV+TA EE A+ED+L+YA RN + +T   L E VRQLCNDG  +PW P  GPG++    F  RH R++LR +RIYE
Sbjct:   30 EAVRSGSMSRNATAAAYGVNKTSLSRRLSGECAMDARVGPGTVMTAVEEDALEDILLYAGRNYIPLTTADLTERVRQLCNDGRPIPWTPDNGPGRSWLEGFLGRHERISLRLARIYE 146
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.320e-22
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:  157 VTIRIAALKFQVSPTSIAIR------IAARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            +++R AA  F V  TSI  R      + A+ G+ T+L+ EEE ++ED+L++A RN L + R  L + VR+LCNDG ++PWDP KGPGK   A F +RHPR+A RS+RIYE
Sbjct:    1 MSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYE 110
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JDZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.720e-22
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1 
Query:  139 AVKRKEVTIRIAALKFQVSPTSIAIRIA------ARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            AV+   ++   AA  F +S TS+  R++      AR G  TVLT EEE A+ED+L+YA RN + +TR  L E VRQLCND   +PWDP KG GK+    F + H R++LR +RIYE
Sbjct:   17 AVRNGSMSRYAAAAAFGLSKTSLLRRLSGECDMDARVGHGTVLTKEEENALEDVLLYAGRNYIPLTRNDLKERVRQLCNDDRPIPWDPDKGLGKSWLQGFLRGHDRISLRLARIYE 132
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.910e-22
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:  157 VTIRIAALKFQVSPTSIAIR------IAARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            +++R AA  F V  TSI  R      + A+ G+ T+L+ EEE ++ED+L++A RN L + R  L + VR+LCNDG ++PWDP KGPGK   A F +RHPR+A RS+RIYE
Sbjct:   22 MSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYE 131
[Close]
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.360e-22
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:  136 EAVKRKEVTIRIAALKFQVSPTSIAIRIA------ARPGSPTVLTAEEETAIEDLLVYARRNCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*FAAFFKRHPRLALRSSRIYE 468
            EAV+   ++   AA  + +S TS++ R++      AR G  TV+TA EE A+ED+L+YA RN + +T   L E VRQLCNDG  +PW P KGPG++    F  RH R++LR +RIYE
Sbjct:   30 EAVRSGSMSGNAAAAAYGISKTSLSRRLSGECAIDARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYE 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3177.8554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JCZ9_9PHAE7.680e-2649.14HTH CENPB-type domain-containing protein (Fragment... [more]
A0A6H5JTL4_9PHAE9.440e-2650.00HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JRY4_9PHAE8.840e-2449.09HTH psq-type domain-containing protein n=4 Tax=Ect... [more]
A0A6H5L5E2_9PHAE2.000e-2347.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLA4_9PHAE2.090e-2347.41HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JHD1_9PHAE1.750e-2244.44HTH psq-type domain-containing protein n=2 Tax=Ect... [more]
A0A6H5K4M5_9PHAE2.320e-2249.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDZ5_9PHAE5.720e-2247.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFM5_9PHAE6.910e-2249.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX7_9PHAE7.360e-2246.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3177contigH-paniculata_contig3177:5632..6150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.1121943-CDS-H-paniculata_contig3177:5631..60391622929978.1121943-CDS-H-paniculata_contig3177:5631..6039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3177 5632..6039 +
1691481095.197277-CDS-H-paniculata_contig3177:5631..60391691481095.197277-CDS-H-paniculata_contig3177:5631..6039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3177 5632..6039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929978.1312437-UTR-H-paniculata_contig3177:6039..61501622929978.1312437-UTR-H-paniculata_contig3177:6039..6150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3177 6040..6150 +
1691481095.2061656-UTR-H-paniculata_contig3177:6039..61501691481095.2061656-UTR-H-paniculata_contig3177:6039..6150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3177 6040..6150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3177.8554.1prot_H-paniculata_contig3177.8554.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3177 5632..6039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3177.8554.1

>prot_H-paniculata_contig3177.8554.1 ID=prot_H-paniculata_contig3177.8554.1|Name=mRNA_H-paniculata_contig3177.8554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
LLSALTHELVTICLRSSTSRTLEACNWSPFYPCRASVWTRKRRNGEAVKR
KEVTIRIAALKFQVSPTSIAIRIAARPGSPTVLTAEEETAIEDLLVYARR
NCLGITRPQLVENVRQLCNDGHKMPWDPLKGPGKA*
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mRNA from alignment at H-paniculata_contig3177:5632..6150+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3177.8554.1 ID=mRNA_H-paniculata_contig3177.8554.1|Name=mRNA_H-paniculata_contig3177.8554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=519bp|location=Sequence derived from alignment at H-paniculata_contig3177:5632..6150+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTGAGCGCTCTAACCCACGAATTGGTCACAATCTGCTTGAGATCGAG
CACATCGAGAACCTTGGAAGCGTGTAATTGGTCACCTTTTTACCCATGCC
GCGCAAGCGTGTGGACGAGGAAACGGAGAAACGGTGAGGCTGTCAAAAGG
AAAGAAGTGACCATTAGGATTGCCGCTCTCAAATTTCAAGTCAGTCCAAC
TTCAATAGCGATCAGGATAGCCGCCAGACCTGGTTCGCCCACGGTTCTGA
CCGCGGAGGAGGAGACCGCCATCGAAGACCTGCTGGTTTACGCTCGTAGG
AACTGCCTGGGCATTACTAGGCCCCAGCTTGTTGAAAACGTTCGCCAGCT
GTGCAACGACGGCCATAAAATGCCTTGGGACCCCCTTAAGGGGCCTGGTA
AGGCCTAGTTCGCGGCGTTCTTCAAGCGACATCCAAGGCTTGCGCTACGC
AGCTCCCGCATCTACGAACGAACCGCGTGTCTACGGACGATCGCTCCAGC
CTAGAGACATTCTACGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig3177:5632..6150+

>mRNA_H-paniculata_contig3177.8554.1 ID=mRNA_H-paniculata_contig3177.8554.1|Name=mRNA_H-paniculata_contig3177.8554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig3177:5632..6150+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTGAGCGCTCTAACCCACGAATTGGTCACAATCTGCTTGAGATCGAG
CACATCGAGAACCTTGGAAGCGTGTAATTGGTCACCTTTTTACCCATGCC
GCGCAAGCGTGTGGACGAGGAAACGGAGAAACGGTGAGGCTGTCAAAAGG
AAAGAAGTGACCATTAGGATTGCCGCTCTCAAATTTCAAGTCAGTCCAAC
TTCAATAGCGATCAGGATAGCCGCCAGACCTGGTTCGCCCACGGTTCTGA
CCGCGGAGGAGGAGACCGCCATCGAAGACCTGCTGGTTTACGCTCGTAGG
AACTGCCTGGGCATTACTAGGCCCCAGCTTGTTGAAAACGTTCGCCAGCT
GTGCAACGACGGCCATAAAATGCCTTGGGACCCCCTTAAGGGGCCTGGTA
AGGCCTAGCTTTTGAGCGCTCTAACCCACGAATTGGTCACAATCTGCTTG
AGATCGAGCACATCGAGAACCTTGGAAGCGTGTAATTGGTCACCTTTTTA
CCCATGCCGCGCAAGCGTGTGGACGAGGAAACGGAGAAACGGTGAGGCTG
TCAAAAGGAAAGAAGTGACCATTAGGATTGCCGCTCTCAAATTTCAAGTC
AGTCCAACTTCAATAGCGATCAGGATAGCCGCCAGACCTGGTTCGCCCAC
GGTTCTGACCGCGGAGGAGGAGACCGCCATCGAAGACCTGCTGGTTTACG
CTCGTAGGAACTGCCTGGGCATTACTAGGCCCCAGCTTGTTGAAAACGTT
CGCCAGCTGTGCAACGACGGCCATAAAATGCCTTGGGACCCCCTTAAGGG
GCCTGGTAAGGCCTAG
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