|
|
Homology
BLAST of mRNA_H-paniculata_contig3174.8550.1 vs. uniprot
Match: D7FRE9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE9_ECTSI) HSP 1 Score: 149 bits (377), Expect = 6.900e-40 Identity = 72/126 (57.14%), Postives = 96/126 (76.19%), Query Frame = 3
Query: 90 ALTRIGKYSLVGVSTGALCGTVLATYRGGPIPFYALSVAANFGLASLTFFGSEALIHRVRGGKRDAWGYTGAGGLTGLVMTVPIGGRYRALASGVAMAGLGYGSFFASHYVQEHIEIMGQERLRER 467
A TR+ + S++G ++GA+ GTVLATYRG +PFYA S+ N+ LASL FFG+EALI + RG KRDA GY GAG TG+ MT+PIGGRY+AL +G+AMAG+GYG F+A + +++ +GQE LR R
Sbjct: 27 AWTRVAQNSIIGATSGAVFGTVLATYRGHSVPFYAASMGTNYALASLAFFGTEALIRKARGDKRDALGYAGAGLTTGMAMTLPIGGRYQALVAGIAMAGVGYGGFYAHRRARAYLDELGQEELRRR 152
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-21_002680.1 |
| Exons | 4 |
| Model size | 1241 |
| Cds size | 531 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3174.8550.1 >prot_H-paniculata_contig3174.8550.1 ID=prot_H-paniculata_contig3174.8550.1|Name=mRNA_H-paniculata_contig3174.8550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MGTMVEEKEAARASPQHGVEQNSALTRIGKYSLVGVSTGALCGTVLATYR GGPIPFYALSVAANFGLASLTFFGSEALIHRVRGGKRDAWGYTGAGGLTG LVMTVPIGGRYRALASGVAMAGLGYGSFFASHYVQEHIEIMGQERLRERA AQARGQSTEQEANRLETGLGSMRARK* back to topmRNA from alignment at H-paniculata_contig3174:8221..15309- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3174.8550.1 ID=mRNA_H-paniculata_contig3174.8550.1|Name=mRNA_H-paniculata_contig3174.8550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7089bp|location=Sequence derived from alignment at H-paniculata_contig3174:8221..15309- (Halopteris paniculata Hal_grac_a_UBK monoicous) TAAGCCCTTTATTCCGGAAGATGGGTACAATGGTGGAAGAAAAAGAAGCA
GCGAGGGCCAGTCCTCAACATGGAGTTGAGCAAAACTCAGCTTTGACGCG
AATTGGGAAGTACAGCTTAGTAGGAGGTGAATTAAGGGAATAAAAATAAA
GACTGCATGCATTTTGGGATATATCCACACCATCTCCCACAGCAGGCCTG
CGATGCATCCTCTCGATCGACCCTTAGATGTACAGCACATCAGGGCTGTC
TTGGCTTGGGTTGTGAGAGGGCATTCATTATTAGCCTTCAATAGGTCTGT
TGCATACTCAGTTACCCCCTTTGTTGACCTGCCCCCCAATTTGAAATCGT
GCAACATTCGTTGTATACAATAAGAACTGCGGTCAGTACTGTAGTCCAGG
AACGAACTCTAGTCCTCAGGGCTTCGAGCCGAGATGTGGACGTGTACGAA
ACGTAGATGTACGTAACACAAGACAAACGCCATGCGCCGCGCAGGACAGT
TAGATTTCTGTATATATTCCTACATCTGATACATGCAGGATCATATGCAG
ATAGATGGACTTATACATGCGTAGAGCTATAGAAAGAGCAAGTATTAGTA
GGTGTAGAGAGATTAACTGAAGGCTATAGGGCAGATAGACCGTCAGTGTT
TCAAAGCTCACAGACATGTGCATGTACGTACGCAGCATCCACCGGTCAAA
TGTCTGCCCCTCGCCGCTTTAGTGTTTTGCCTTAGTGCGCTCTTTGTGGG
TGGGTCTGATTTGATCTGATCGGTATTCCGTTTTCCAAATTGTGCCATAA
AGTCACGTACATCATCAAAGAAAACATGTTTTCCCATCTTACGACTTATA
ACACCTTTGACTGCTTTTCACCGTATGTGCGCTAAAACAATTAGTTTCGA
CCGGCGCATTGTGCGGTACCGTGCTGGCGACATATCGTGGTGGGCCCATC
CCCTTCTACGCGTTGAGCGTGGCAGCAAACTTCGGACTTGCGTCCTTGAC
GTTTTTCGGTGAGCACTCACAATCCTTTTCAATTAACATGTACGCTTGGG
GTCGTCGTCATCGTTTCCATTGATTCGGAACATATTTTCAACTCTGTACT
GGAGTGAAATATGAAATGGGAATCTTACGGGACAAAGATCGGACTACTAC
ATAGGCGTAACCGTAGCTGTACAATAGTATTTAATAGTAGTATTACATGT
ACGTCATAAAACCTACTCAATAGCGGTTGATTGACTTCGTGTATCATGTT
TCACCGGCAAGACAAAAAGCTTAAACGGTTTCTTGGATGTAAAGCGTCTC
TTTCTGCGAGACTTTTTTTATTATTATTTTGTATTTGTATCTCGTCCTGC
AACTCAAGTCAACAACTCACCCCCCGGACAAATACGAATGGCGCATTCGT
AGCGGTCTAAGCGCTGAAAATTTTTCATTATTGGTGAATACGAATACGTT
GCACATAAAGTCTGGAATCGAACGTTGGACGAGTTGCTGTGTCGCATTTA
TTCATTTGCAAGAATGCTCCTCATGGAACTTTCCCGTATTCGTATTCAAC
CCTACGAATGCTCCATCTGAGACCCATTCGCAGTTATATTCATCCACACA
AATGCTTTACACTGGACCTGTTTGCCGTTGTATTCGTCCATGAGAATGCT
CCACACTGAACCTATTTGCAGTTGTTCAATCACCCACGATTACTCCACTA
GAAACAATAATGTTGCGGATGTTCATCCATACACAAAATACTCCTTGATC
TGTCAAGAGTAAAACAACAAAACGAACGAATGACACAAGTTTGGAGCCAA
GAGGAGCAAGGAGACTCGTGCCGCAAGACCGCATCCATTACAGTAGATTG
ATTGCCTGTCCACTGTGTTCTCCATCCCTCATATCTTGTGGCGCTTGGGT
GTCGCGTGCTCTGGCTTGCGACGGGTCTTGTTTGTGTGGCACTTGTCGGC
GCAAGCCACACGTCACGAATTTAATCTTCACACCTTGTTGCTGCACACTG
GTAAGAACGGCAGGGCAGTATCAAGGTCAACAAGAAAATACCTCTGACAC
GAAAGATTGCGTCTCTCAATCCCTCAGTTCTTAGATGCCTATCGGCTGCA
CTGCATGTGCCTTCATTTGCTGTGATGCTAACTGAGGGCATGTTGACGGT
GAATTGCTCATTAATTACTTGGAAAACTCTAACAGATCAACGGAATGCGA
TCATGTTGCATTCAATTAACACACCGAATCAATGCAACCTCCGGCGGCCA
CGTCATCCAAGCTTTCATACTCAAGTTTTTGTGCCTCTTTTGAAGGGGCT
TCGTTACTCAAGTGCAAAAAACAATTCGTGCTTTTTTCCAAAACCGTCTA
ATGTGTTGTATTTTCGAGAGACTAGGCGCATGAGGATTGTACACATGAAC
GCGGGTGGGTTTGAACGTTGAGAACCTTAACGCATATACAATCAATGTAC
AAGTACAAGTGTTAGTTTTTCTAGATGGTATAGTGCATATTCCGTCGGTA
TTTCCCCGAGTGTTCGGAGGGTGGAGCGTAATGTGCACGTTCGGAACATC
AATGAGTATACAATTGCCGTACTGCTGTTTGTTTCCCGGATAGTACAGTG
CATATCCCATCGTTATTTCCCGGAGTGTTCGAATAGTGGAAGGTAGTATG
CACGATCGGAACACTCATGCATTGCAACCGCCGCACGGCTATTTGTTTTT
CGGGTGCTACGGTGCATATTCCGTCGGTATTTCCCCGAGTGTCCGAATGA
TCGAGTACACCACGAATACAGTATTCACGGTTGGTTTCTCGTATTCAAGA
TGTATTTATTCGTTTACAAGTCTTTGAATGGTCACTCTCCAGATGGTCAC
CAGGTGGTCATATACCCGGCGAACAGTGACACATGCAGGTCCTGTTTATT
TCAAGGACAGTTCTGTCTGTACAGATTGAATACTCTATCTGCCCGAGCTT
TTCGATGCTTCATGGGATATCGCGTACACTGCATATTATTCGCGTCACAT
GGACACCTTCCCCAACTCAAACAAACAAAGTATTCAGTCCAGATCTTGCG
TATTTATTCGTGTTTTGTATTCGTATTTGTCCGGGGGGTGCAACAATTCA
CGCGGCCTGTTGGATATGCGTTGCTCTACGTCTACCAGATGGAACACAGC
CGATTTCATCTCATGTGTCCGCGGTTCTAGAAACAACGATATTGGCGCTC
GACCAAATGGAACGTCTGATGAATAAATATCAGAAACGGTAACGCCACGA
CTAAATACATCACTAAACCTTGCACCCCCCTGACATACGAATATTTACAA
ATTATTTTCACAAAAAACTGAAAGTATTCGCCTGAGTTTCAGAATGAGTT
CGTGCATTCTATGTGCCCCGGACCATCCACGATTGCTAAAAATACTCGTA
AACCGAATGGACAGGGGTGGGTACTATATTCTATGTGTCCGCTCATTCTG
AAACTCAGGCGAATATACTTCTTTTTTTTTGTGAAAACCATTTGCAATTA
TTCATATTTGTCCGCGGGGTGAAACCTTGTTGTAGCTTTCTTTCGTTTTT
GCTCGGTTGTACAAGACATGGATGATATTCGCCGTGGGCTGGATGAATTT
ATGCACTGTAGGCTGACGTAGCTTTATGCGGTATACTTTTCGCCCGGTGT
CGCGATAACCTTTTGCGAAGTTATTTTATCGACAATAAAGTAAAAGCTTG
GCTACACTGTAGGCGAAAAACACTCATGTCTTTTTGGAAAACTGGATGGC
CACAAATATGAACTCGAAACAACCTTAAGCGTCATGAGCACAGCGCAGTT
ACCAAAATAATTGAGTGTGGACAATGTTCCCATCACCGAGTGACATAACA
TCCTGCATACTAGGTCATTTTCCAGTTCACTCATGAGCTTGTATTCCTTG
ATCCCTGTACTTGGCTCGACACTGTAGTACACATCTCTTTTTTTTCACCG
GGGATGAAGTAATACCCTCACTGTACACTAGTTTATTTGCTAGCCCAGCC
CACTTCTGGGCTTGTATTCCTGTGTCCTTGTACGTGACTGGAAGCTACAG
TGATCTACCTTTCACGGGCGTCATCTGCTATACCTGTACTCAGCAGCGCG
AAGCGGCGGGGGATGTGTTTATGCTGCTCTGTCTTCAATGCCACATTGGT
TCCATTTTGCCAAAGTACACGCTTCCGATCATCGTGACTGGGTGACTAAC
TAGCTGAGTGACTGCTAGCGTGTGCAATTCAGGCTTGTGGTAGCCATTTC
CATTCCCGATTTCTCATGGGTTGTTTTTTTCAACTCTCTCCCTGATCTCC
CCACCGCACTCGCATCAAATCGTTTCAACCATCGCGGCGTGTGTATGATA
ATATGTGCGGAATTTCGTATGGTATGATTTTATATCAATTGTGTATGTGT
TTGTGTGTGTGTGTGCGCGCGCGCGTGTTAGTACAGCATATGGATCACAC
AATGCAGTATTAACCCTTTCGGGATGCGGCCCTTTGAGATCTGTTTAGTT
TTGTTTTTTTTCCCCATATAATGGAAAATAGGTCAGACTTGTATCAGACC
TCGGCATGCAACCCATCATTAATCTACTTTTGGGCTCTCCTTTGAAAAAA
GCTGCTGATTTTCAACGCGAATTGAATCTAAATCTTGAACGACAATTCGA
AAAGTACCCGAGCCTCGAAGGGGTCATATATGTTGACTGCCTCATGTGCA
GCCCCCCAACATGTTGCTTTTTGCAGTTTTGCTAGCAGCTGAATTCCCGT
GCCCTACCCTACCCTCTTCTTCTCTCCACCTCTATCCCTTTATATCTGGC
CGATGCTTGCTCTCTGCACTCCCAGGTAGCGAGGCGTTGATTCACAGGGT
TCGTGGAGGAAAACGTGACGCTTGGGGTTACACGGGTGCGGGGGGTCTCA
CTGGTTTGGTGATGACTGTTCCTATAGGTGTGGATCGGCGCGATCGCGGC
ACGTGCGATGTGTTCGCTCAATACTGAATAAATACATAAGGATTTTTTTA
TGTTATTATTGGAGCCCTTTGAGGGATGCAACTTCTTTTTTTCTCCCAAA
AGTTTGATTGGTCACCTTGTACGAATTGACCATTGTTCTTTTAGCTGAAG
GCTATGTATGTTTGTTTATACATTGTATGTACCGACGAGTCATACAACGA
CTCCTCTTTTTAGAGGGTAGACGGATTAACCCATAAATAAATACATGGAT
TACCTCTATTGCCGTTTTCCAGCATATAATAATGCCATGTTCCATCGAAA
AAAATATGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCACC
ACAAAAATCAAACAGCTCCCGGTCCGCCGCGAACGGCGCACGACTCAAAA
AAATACAGAGAGAGAAAANNNNNNNNNNCCCTTTTTTGAGAGGGGAGTGG
CAAAAAACAAAAAAAAAAAAAATAATATCCCTTTTTCGTTTTTTTCCAAA
AAAAAAAAACCACTCTCTCCCCAAAAAAAAATAAGCCCCCCCCCCCCCCC
CCCCAGAAGATTCCAGAAAATAGATTTTGAGGCGCGAGTCTCCTTAAGGG
TTAAGTGTCAGCACACAATTAGAACTACGTGCATGAGAAACAGTACCCCG
AATGTAGCTCATATGAGAATCTATGAGATGCTAGGTTTTGATTAATGCTG
CCAACATCCTTCACCCTAAGATGGAAAGGGAAAGCTTTTGTGGAGCGTAA
GATATAGTACCACCCGCCGAACACATGAGTATATACTTTCGTTTATGAGA
CAGAGGAAGTATGCTAGGCAAAACAAATATGTTCTGTGATCGTTTTATGT
TGGGGATATACGAGGAATGCACCGACCAAGATTAGAGGGGTACAGCTTGA
CAACATGCCTACCTGCAAGGGCATGATCAAGCGCAACAGCTCCCTGTGCA
CAGTAGATGGGATTTGACAGACGACCATCGAGCAGGAAAGTGATCTGTCG
ATGAAGGTACGTCGGGTGCTCAGCACCCCGCGCATCCTGTAGGCAGGCAC
CAACAGTTGAGTATCATTTCTTACTACTCGAAGAAATTGGCCGCATGATG
TCGGGATGAAGTAAGTGACCTTCATTGCTGCACTTTTCAGCGGCGCAGAT
GAGGTTCTTTCGTTTTTCCGTACTCAATCCTTCACTCCCTTATGCTTTTT
TTTTTTTTCTCTTTTTTCTGCCGCGATGAATTGCTATCAGGGGGGCGGTA
CAGGGCCTTGGCATCTGGGGTCGCGATGGCTGGGCTAGGTTATGGTAGTT
TTTTCGCCAGCCACTACGTGCAAGAGCACATCGAAATAATGGGCCAGGAG
AGGTTACGGGAACGTGCTGCCCAGGCGCGAGGACAGAGCACAGAGCAGGA
AGCCAATCGTTTAGAAACTGGGCTCGGTTCGATGCGGGCACGAAAATGAA
ATTCAAATGGGTTATTGTCACCGGTCTTCTTGTTGGTTCTTGATTTATAG
TAGACCTTCAATAGTATCCCGAGTCTGTACGTTGTTGTCGGAAGGTGAAT
GCGACGCCAAATGAGAACACGATGCTCCCCGGGAGAGACTGGCTCTCGAG
GGGACACCGCCTGCTCTATGCCGGTCGGTCCTAGGTCTTGGGATGTAGTG
CGGAGCAAGCACTTGAGTCTTGTTCTCTTGGAGATGGAGGGGCCATCGAG
GATCGGACACAACTAGAAAGCTGTTCCGAGAAAGGTACAAAAATGCCATT
GGTCGTTGTGTAGGGGATCGGGGTTCATGAACCCCAGGAACGTCAGGAAC
GTGCTCTCCACATATGGAGCGTTTTTTTTTTTTTAAACGTCAAAAATGCC
TACTAGTCTAGATGTAATGTCTAACTCTTGCAACGTTCCAAATTAGCTCC
TGTTTTTTGTGTTGGTGGAATTGTGTTGGTTACTTCATTGGTTTATTATT
GGACCATAATTTCTGCCCCCCTATGTGTCGCCGTTTTTGCGTGGTTCGGA
GTTTCGCAGATAGAAAAGCAGTCCGATTTATCTCGTAACTACTGGAAAAA
TGCAAAATCTTGGCCATACAGCGTGGCACGCCAATGTAACGGATTCTACC
ACAATATCTATAAATCTGACGATGCGGGCTATCACGAGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3174:8221..15309- >mRNA_H-paniculata_contig3174.8550.1 ID=mRNA_H-paniculata_contig3174.8550.1|Name=mRNA_H-paniculata_contig3174.8550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig3174:8221..15309- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGTACAATGGTGGAAGAAAAAGAAGCAGCGAGGGCCAGTCCTCAACA TGGAGTTGAGCAAAACTCAGCTTTGACGCGAATTGGGAAGTACAGCTTAG TAGGAGATGGGTACAATGGTGGAAGAAAAAGAAGCAGCGAGGGCCAGTCC TCAACATGGAGTTGAGCAAAACTCAGCTTTGACGCGAATTGGGAAGTACA GCTTAGTAGGAGTTTCGACCGGCGCATTGTGCGGTACCGTGCTGGCGACA TATCGTGGTGGGCCCATCCCCTTCTACGCGTTGAGCGTGGCAGCAAACTT CGGACTTGCGTCCTTGACGTTTTTCGTTTCGACCGGCGCATTGTGCGGTA CCGTGCTGGCGACATATCGTGGTGGGCCCATCCCCTTCTACGCGTTGAGC GTGGCAGCAAACTTCGGACTTGCGTCCTTGACGTTTTTCGGTAGCGAGGC GTTGATTCACAGGGTTCGTGGAGGAAAACGTGACGCTTGGGGTTACACGG GTGCGGGGGGTCTCACTGGTTTGGTGATGACTGTTCCTATAGGTAGCGAG GCGTTGATTCACAGGGTTCGTGGAGGAAAACGTGACGCTTGGGGTTACAC GGGTGCGGGGGGTCTCACTGGTTTGGTGATGACTGTTCCTATAGGGGGGC GGTACAGGGCCTTGGCATCTGGGGTCGCGATGGCTGGGCTAGGTTATGGT AGTTTTTTCGCCAGCCACTACGTGCAAGAGCACATCGAAATAATGGGCCA GGAGAGGTTACGGGAACGTGCTGCCCAGGCGCGAGGACAGAGCACAGAGC AGGAAGCCAATCGTTTAGAAACTGGGCTCGGTTCGATGCGGGCACGAAAA TGAGGGGGCGGTACAGGGCCTTGGCATCTGGGGTCGCGATGGCTGGGCTA GGTTATGGTAGTTTTTTCGCCAGCCACTACGTGCAAGAGCACATCGAAAT AATGGGCCAGGAGAGGTTACGGGAACGTGCTGCCCAGGCGCGAGGACAGA GCACAGAGCAGGAAGCCAATCGTTTAGAAACTGGGCTCGGTTCGATGCGG GCACGAAAATGA back to top
|