mRNA_H-paniculata_contig31737.8548.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31737.8548.1
Unique NamemRNA_H-paniculata_contig31737.8548.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 9.040e-68
Identity = 114/141 (80.85%), Postives = 127/141 (90.07%), Query Frame = 1
Query:    1 QVRLDGYEPHSSIPVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIRRLSPALREDITGDNPYMVSPLAATAQTLRAEEPGE 423
            QVRLDG+EP+SSIPVNSDD+AVPFETPLFKGRLL+RVAGLP       D +Q+YFRGKKRLMQCAVQG FK+EL FDR YTGQAY RPFTQLPAKWLIRSAF++IRRLSPALREDITG+ PYMVSPLAATAQ++RAE PG+
Sbjct:  950 QVRLDGHEPNSSIPVNSDDIAVPFETPLFKGRLLVRVAGLP------GDGAQDYFRGKKRLMQCAVQGEFKKELPFDRVYTGQAYDRPFTQLPAKWLIRSAFSLIRRLSPALREDITGERPYMVSPLAATAQSMRAEAPGD 1084          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A7S4CGR5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CGR5_9EUGL)

HSP 1 Score: 111 bits (278), Expect = 1.600e-27
Identity = 57/130 (43.85%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   34 SIPVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIRRLSPALREDITGDNPYMVSPLAATAQTLRAEEPGE 423
            ++ VNS    + FET +FKG + +R+   P           +YF+GK R +Q AVQG FK+EL  D  +TG+   +P   LP KW++ +A  V+R+LSP +RED+ GD PY++S LAATAQ LR +  GE
Sbjct:  104 ALQVNSA-TPIHFETAIFKGCMQVRIKDCP------GAPQTDYFQGKARTIQMAVQGQFKKELPMDTVFTGEEQHQPLANLPPKWVVSTALGVVRKLSPGMREDVQGDRPYVLSFLAATAQALRCDASGE 226          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A7S2WDF6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDF6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.940e-24
Identity = 53/138 (38.41%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 QVRLDGYEPHSSIPVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIR-RLSPALREDITGDNPYMVSPLAATAQTLRAE 411
            ++ + G   + ++P+N     +PFETPLFKG  +IR+A LP        +  +YF  K+R MQ A+QG FKR L FD  ++GQ  V+P   +P +W+I+ A +++R RL    + D   + PY +SPL +T+Q  RA+
Sbjct:  725 EILVPGKSAYGALPINDRRTPIPFETPLFKGVAMIRIADLP-------SSPTDYFYRKRRKMQVAIQGKFKRPLTFDNVFSGQELVKPLRNIPGRWMIKWALSLLRSRLPNTFKCDAFQEQPYFLSPLISTSQCFRAD 855          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A7S3Y031_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y031_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 3.530e-23
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  136 GQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIRRLSPALREDITGDNPYMVSPLAATAQTLRAEEPG 420
            G   A  +YFRG+ R  Q AVQG FK  +A     TGQAY RPF +LPA+WL+R+AF +I++++P L+E+I+G  P ++SPL AT+Q +  E PG
Sbjct:    2 GAGAADDDYFRGRSRRFQVAVQGEFKVPVAAAALATGQAYRRPFRRLPARWLVRAAFVLIKKIAPTLKEEISGPFPTLLSPLLATSQAVLVERPG 96          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: K8EQ44_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EQ44_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 3.280e-22
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1
Query:   37 IPVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQ--SDASQEYFRGKKRLMQCAVQGCFKRE-LAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIRRLSPALREDITGDNPYMVSPLAATAQTLRAEEPGE 423
            +P+N D   +   T  F G+LL+R   +P R   +  +D +++YF  KKR  Q  VQG F R+ +      TG  +   F ++PA+WL+ +A  VIR+L+P L  +ITG+ P++ +PL ATAQ LRA+ PGE
Sbjct:  105 LPIN-DTRGIEIRTNAFAGKLLVRCRDVPSREGDEEGNDVTKKYFANKKRTFQTVVQGRFLRKGIKCSEVVTGHEFESRFRRIPARWLVSTALKVIRKLTPGLEANITGNKPFIYAPLCATAQVLRADVPGE 235          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A7S3XB19_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XB19_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 2.100e-16
Identity = 40/125 (32.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   31 SSIPVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIRRLSPALRED-ITGDNPYMVSPLAATAQTL 402
            +++P+N +   + FE+P FKGR+L+ +AGL        ++    F G++R +Q  VQG FK+E++F+  +TGQ + RP   LP+ W +    +++  +SP ++   IT   P +++ LA+++Q +
Sbjct:  294 NNLPINGN-TPIEFESPYFKGRILVYIAGL-------ENSPDNIFAGRRRQLQTVVQGRFKKEVSFNDVFTGQEWFRPLLNLPSIWFVNLVVSILSAVSPTMKASGITSGKPSLLAKLASSSQVI 410          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A7J7Q9G7_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q9G7_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 1.530e-15
Identity = 47/134 (35.07%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   28 HSSIPVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQSDASQEYFRGKKRLMQCAVQGCFKRE-LAFDRAYTGQAYVRPFTQLPAKWLI-RSAFAVIRRLSPALREDITGDNPYMVSPLAATAQTLRAEEPGE 423
            H ++P N    AV FETPLFKG++L+ + GL       ++     F GK+RLM   VQG FK+  ++FD    G  + RP  +LPA  L+ +++  ++ ++   ++ D +G  P++++PL A AQ +   EPG+
Sbjct:   85 HRTMPFNDTTQAVDFETPLFKGKVLVMMRGL-------ANTPARLFDGKRRLMWMVVQGRFKQPGVSFDGLCLGSEFCRPL-KLPAGTLLSKASMWLVSKMGSGVQLDTSGSCPHILAPLIAAAQVVNVSEPGQ 210          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A2A9M5H9_9APIC (Uncharacterized protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M5H9_9APIC)

HSP 1 Score: 82.0 bits (201), Expect = 1.990e-15
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   70 FETPLFKGRLLIRVAGLPPRVPGQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIRRLSPALREDITGDNPYMVSPLAATAQTL 402
            FE P F+G ++IRVA +     G+S     Y   KKR MQ  VQG F +        TGQ +      LP +W++     V++RL+  L+EDIT ++PY ++P    AQT+
Sbjct:  536 FENPFFRGVVVIRVAAV-----GESPGGATYTDSKKRCMQACVQGQFLQPHRVGEVLTGQVFSHALKSLPPRWMVSLGMKVVKRLTNTLKEDITSEHPYFLTPAVCVAQTV 641          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A7S2CW04_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CW04_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.140e-15
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  127 RVPGQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIR-RLSPALREDITGDNPYMVSPLAATAQTLRAE 411
            R+     +  +YF GK+R MQ A+QG FK+ L FD+ ++GQ + +P   +P +WLI+ A +++R RL    + D     P+ +SPL +T+Q  RA+
Sbjct:    2 RIADLKTSPADYFGGKRRKMQVAIQGKFKKPLRFDQVFSGQEFSKPLCNIPGRWLIKWALSLLRSRLPDTFQADAFAKKPFFLSPLISTSQAFRAD 97          
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Match: A0A2R5GJI6_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJI6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.930e-15
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   16 GYEPHSSI--PVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQSDASQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRSAFAVIRRLSPALREDITGDNPYMVSPLAATAQTLRAEE 414
            G++  +++  P+ ++ V+ PFET LF G  + R+ GL          + +YF G+ RL    V G FK+E++F  A TGQ + +P  + P+  L++   +  R L+P L+  + G+  YM+SPLA TAQ +   +
Sbjct:  107 GWDAETNVGKPLPTNGVSFPFETDLFAGSAMFRMRGL--------STASDYFEGRARLSSIVVTGTFKQEVSFQDAMTGQEFCKP-VKSPSSLLVKPLLSFFRLLAPLLQIHV-GNQTYMLSPLAQTAQAIHVSD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31737.8548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LTP0_ECTSI9.040e-6880.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4CGR5_9EUGL1.600e-2743.85Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S2WDF6_9STRA1.940e-2438.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3Y031_HETAK3.530e-2349.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8EQ44_9CHLO3.280e-2240.15Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A7S3XB19_9CHLO2.100e-1632.00Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7J7Q9G7_9CHLO1.530e-1535.07Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A2A9M5H9_9APIC1.990e-1536.94Uncharacterized protein n=1 Tax=Besnoitia besnoiti... [more]
A0A7S2CW04_9STRA2.140e-1537.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R5GJI6_9STRA7.930e-1533.33Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31737contigH-paniculata_contig31737:763..1420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue5e-59
Seed eggNOG ortholog2880.D8LTP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZJM@1,2SAPD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.3928874-CDS-H-paniculata_contig31737:762..9871622929977.3928874-CDS-H-paniculata_contig31737:762..987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31737 763..987 -
1691481094.922109-CDS-H-paniculata_contig31737:762..9871691481094.922109-CDS-H-paniculata_contig31737:762..987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31737 763..987 -
1622929977.4079168-CDS-H-paniculata_contig31737:1219..14201622929977.4079168-CDS-H-paniculata_contig31737:1219..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31737 1220..1420 -
1691481094.9332783-CDS-H-paniculata_contig31737:1219..14201691481094.9332783-CDS-H-paniculata_contig31737:1219..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31737 1220..1420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31737.8548.1prot_H-paniculata_contig31737.8548.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31737 763..1420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31737.8548.1

>prot_H-paniculata_contig31737.8548.1 ID=prot_H-paniculata_contig31737.8548.1|Name=mRNA_H-paniculata_contig31737.8548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
QVRLDGYEPHSSIPVNSDDVAVPFETPLFKGRLLIRVAGLPPRVPGQSDA
SQEYFRGKKRLMQCAVQGCFKRELAFDRAYTGQAYVRPFTQLPAKWLIRS
AFAVIRRLSPALREDITGDNPYMVSPLAATAQTLRAEEPGE*
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mRNA from alignment at H-paniculata_contig31737:763..1420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31737.8548.1 ID=mRNA_H-paniculata_contig31737.8548.1|Name=mRNA_H-paniculata_contig31737.8548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=658bp|location=Sequence derived from alignment at H-paniculata_contig31737:763..1420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTCGCTTGGACGGATACGAACCCCACTCCTCCATCCCCGTAAACAG CGACGATGTGGCGGTACCCTTTGAGACCCCTCTCTTCAAAGGCAGGCTAC TGATCAGGGTAGCGGGGCTGCCTCCTCGTGTCCCCGGCCAGAGCGATGCC TCCCAGGAGTACTTTCGCGGTAAAAAAAGGCTCATGCAATGTGCTGTGCA GGTGGGTTTTTTGTGCACGGGTACCGTAGTAAATCTAAAAATTGCTCATG ATGATGGTGAGCACATATAGTTGTAATAGCCATAGCTAAAGGCTCAAGAA TAAATTCAGCACGGAAATGTGTCAATGTTGTACTTCTGGCTCTAGATTGC TGAAAATTGACCACATATATATATATTTGCCACTCTTTCGTGCCCTCTCA CCCCCCCCCCCCTCCTGCGCAAATATAATAAAGGGATGTTTTAAGCGGGA GTTGGCGTTTGACAGAGCCTACACAGGCCAGGCTTATGTACGTCCGTTCA CGCAGCTGCCTGCTAAGTGGCTCATCCGCTCGGCTTTCGCGGTGATAAGG AGGCTTTCGCCCGCGTTGCGGGAAGACATCACGGGAGACAATCCCTACAT GGTGAGCCCCTTGGCGGCCACGGCTCAGACGCTGAGGGCGGAGGAGCCAG GTGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig31737:763..1420-

>mRNA_H-paniculata_contig31737.8548.1 ID=mRNA_H-paniculata_contig31737.8548.1|Name=mRNA_H-paniculata_contig31737.8548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig31737:763..1420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTCGCTTGGACGGATACGAACCCCACTCCTCCATCCCCGTAAACAG
CGACGATGTGGCGGTACCCTTTGAGACCCCTCTCTTCAAAGGCAGGCTAC
TGATCAGGGTAGCGGGGCTGCCTCCTCGTGTCCCCGGCCAGAGCGATGCC
TCCCAGGAGTACTTTCGCGGTAAAAAAAGGCTCATGCAATGTGCTGTGCA
GCAGGTTCGCTTGGACGGATACGAACCCCACTCCTCCATCCCCGTAAACA
GCGACGATGTGGCGGTACCCTTTGAGACCCCTCTCTTCAAAGGCAGGCTA
CTGATCAGGGTAGCGGGGCTGCCTCCTCGTGTCCCCGGCCAGAGCGATGC
CTCCCAGGAGTACTTTCGCGGTAAAAAAAGGCTCATGCAATGTGCTGTGC
AGGGATGTTTTAAGCGGGAGTTGGCGTTTGACAGAGCCTACACAGGCCAG
GCTTATGTACGTCCGTTCACGCAGCTGCCTGCTAAGTGGCTCATCCGCTC
GGCTTTCGCGGTGATAAGGAGGCTTTCGCCCGCGTTGCGGGAAGACATCA
CGGGAGACAATCCCTACATGGTGAGCCCCTTGGCGGCCACGGCTCAGACG
CTGAGGGCGGAGGAGCCAGGTGAGTAAGGATGTTTTAAGCGGGAGTTGGC
GTTTGACAGAGCCTACACAGGCCAGGCTTATGTACGTCCGTTCACGCAGC
TGCCTGCTAAGTGGCTCATCCGCTCGGCTTTCGCGGTGATAAGGAGGCTT
TCGCCCGCGTTGCGGGAAGACATCACGGGAGACAATCCCTACATGGTGAG
CCCCTTGGCGGCCACGGCTCAGACGCTGAGGGCGGAGGAGCCAGGTGAGT
AA
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