mRNA_H-paniculata_contig31727.8545.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31727.8545.1
Unique NamemRNA_H-paniculata_contig31727.8545.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31727.8545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31727contigH-paniculata_contig31727:1853..2339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size487
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31727.8545.1prot_H-paniculata_contig31727.8545.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31727 1869..2174 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.0254502-UTR-H-paniculata_contig31727:1852..18681622929977.0254502-UTR-H-paniculata_contig31727:1852..1868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31727 1853..1868 +
1691481094.7498188-UTR-H-paniculata_contig31727:1852..18681691481094.7498188-UTR-H-paniculata_contig31727:1852..1868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31727 1853..1868 +
1622929977.0535583-UTR-H-paniculata_contig31727:2174..23391622929977.0535583-UTR-H-paniculata_contig31727:2174..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31727 2175..2339 +
1691481094.7664006-UTR-H-paniculata_contig31727:2174..23391691481094.7664006-UTR-H-paniculata_contig31727:2174..2339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31727 2175..2339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.041425-CDS-H-paniculata_contig31727:1868..21741622929977.041425-CDS-H-paniculata_contig31727:1868..2174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31727 1869..2174 +
1691481094.7583601-CDS-H-paniculata_contig31727:1868..21741691481094.7583601-CDS-H-paniculata_contig31727:1868..2174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31727 1869..2174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31727.8545.1

>prot_H-paniculata_contig31727.8545.1 ID=prot_H-paniculata_contig31727.8545.1|Name=mRNA_H-paniculata_contig31727.8545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MPSPPIHQEKETMTEPIAINNARTPNSNSHKINVINRTYAGNIFKCPTQG
GGPFQTLLFIHSFLLITTKRYFFSDEIFYHDKQATSTHTGSTPTREAQAE
V*
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mRNA from alignment at H-paniculata_contig31727:1853..2339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31727.8545.1 ID=mRNA_H-paniculata_contig31727.8545.1|Name=mRNA_H-paniculata_contig31727.8545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=487bp|location=Sequence derived from alignment at H-paniculata_contig31727:1853..2339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCTGACGTGAAACGATGCCCTCTCCTCCAATTCACCAGGAAAAGGAAA
CGATGACAGAACCAATTGCCATCAACAACGCACGAACGCCTAACTCAAAT
AGCCATAAAATAAATGTCATAAATCGTACTTACGCTGGAAACATCTTCAA
ATGCCCAACACAAGGCGGTGGACCATTCCAAACACTCCTTTTTATCCACT
CTTTTCTTTTAATAACAACCAAACGATATTTTTTTTCTGATGAAATATTT
TATCACGATAAACAGGCAACCAGTACACACACTGGGTCAACACCAACTCG
GGAGGCACAGGCCGAGGTGTAAAGCGATTCGCTTGCAAGGTAGCCGGTGT
GCAAACATTAGAATATACCCAAAGCCAGAGAAGCATCGCCAGCTGAAACC
CACAACAAAAAATCCCTGCAAAAGAACCCTCACAGCCCCCCACGCTGATG
ACGCTATTCATCCCAGGGTTCACAACACGTAAAAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig31727:1853..2339+

>mRNA_H-paniculata_contig31727.8545.1 ID=mRNA_H-paniculata_contig31727.8545.1|Name=mRNA_H-paniculata_contig31727.8545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig31727:1853..2339+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCTCTCCTCCAATTCACCAGGAAAAGGAAACGATGACAGAACCAAT
TGCCATCAACAACGCACGAACGCCTAACTCAAATAGCCATAAAATAAATG
TCATAAATCGTACTTACGCTGGAAACATCTTCAAATGCCCAACACAAGGC
GGTGGACCATTCCAAACACTCCTTTTTATCCACTCTTTTCTTTTAATAAC
AACCAAACGATATTTTTTTTCTGATGAAATATTTTATCACGATAAACAGG
CAACCAGTACACACACTGGGTCAACACCAACTCGGGAGGCACAGGCCGAG
GTGTAAATGCCCTCTCCTCCAATTCACCAGGAAAAGGAAACGATGACAGA
ACCAATTGCCATCAACAACGCACGAACGCCTAACTCAAATAGCCATAAAA
TAAATGTCATAAATCGTACTTACGCTGGAAACATCTTCAAATGCCCAACA
CAAGGCGGTGGACCATTCCAAACACTCCTTTTTATCCACTCTTTTCTTTT
AATAACAACCAAACGATATTTTTTTTCTGATGAAATATTTTATCACGATA
AACAGGCAACCAGTACACACACTGGGTCAACACCAACTCGGGAGGCACAG
GCCGAGGTGTAA
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