mRNA_H-paniculata_contig3170.8542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3170.8542.1
Unique NamemRNA_H-paniculata_contig3170.8542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3170.8542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3170contigH-paniculata_contig3170:16707..17161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.6827617-CDS-H-paniculata_contig3170:16706..171231622929976.6827617-CDS-H-paniculata_contig3170:16706..17123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3170 16707..17123 +
1691481094.6209288-CDS-H-paniculata_contig3170:16706..171231691481094.6209288-CDS-H-paniculata_contig3170:16706..17123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3170 16707..17123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.7016988-UTR-H-paniculata_contig3170:17123..171611622929976.7016988-UTR-H-paniculata_contig3170:17123..17161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3170 17124..17161 +
1691481094.631108-UTR-H-paniculata_contig3170:17123..171611691481094.631108-UTR-H-paniculata_contig3170:17123..17161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3170 17124..17161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3170.8542.1prot_H-paniculata_contig3170.8542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3170 16707..17123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3170.8542.1

>prot_H-paniculata_contig3170.8542.1 ID=prot_H-paniculata_contig3170.8542.1|Name=mRNA_H-paniculata_contig3170.8542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
HIISVLYTHSCLQLFEQRDLPKHSVGIWSIQNDEDDPTNADERGRYPDVH
TCLPINRLCGIFGRFPLHSVPRGGPAFRVLSPSTTESQRRASTRIAALLQ
RIFWLHVQEKNVSMFSATTRRRANGDVFMLFCRMKKVQ*
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mRNA from alignment at H-paniculata_contig3170:16707..17161+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3170.8542.1 ID=mRNA_H-paniculata_contig3170.8542.1|Name=mRNA_H-paniculata_contig3170.8542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at H-paniculata_contig3170:16707..17161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATCATATCCGTGCTTTACACTCACTCATGTCTACAACTTTTCGAGCA
GAGGGACCTTCCAAAACATAGTGTAGGTATCTGGTCGATCCAGAATGACG
AAGACGACCCCACCAACGCAGACGAACGAGGTCGCTATCCAGATGTGCAT
ACGTGCTTGCCAATCAATCGACTGTGTGGTATCTTCGGTCGTTTTCCCCT
CCACTCGGTGCCAAGGGGTGGGCCCGCTTTTCGAGTTCTTTCACCCTCGA
CCACAGAATCACAGCGGCGTGCCTCCACTCGTATTGCAGCTCTTTTACAG
CGGATATTCTGGCTCCATGTGCAAGAAAAAAACGTCTCCATGTTCTCCGC
CACAACACGGCGGCGTGCGAACGGAGATGTATTTATGCTATTCTGTCGGA
TGAAAAAGGTGCAGTAGGTGTGACCTCTTATGGCACCACAGTGCGCAGAC
GAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3170:16707..17161+

>mRNA_H-paniculata_contig3170.8542.1 ID=mRNA_H-paniculata_contig3170.8542.1|Name=mRNA_H-paniculata_contig3170.8542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig3170:16707..17161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATCATATCCGTGCTTTACACTCACTCATGTCTACAACTTTTCGAGCA
GAGGGACCTTCCAAAACATAGTGTAGGTATCTGGTCGATCCAGAATGACG
AAGACGACCCCACCAACGCAGACGAACGAGGTCGCTATCCAGATGTGCAT
ACGTGCTTGCCAATCAATCGACTGTGTGGTATCTTCGGTCGTTTTCCCCT
CCACTCGGTGCCAAGGGGTGGGCCCGCTTTTCGAGTTCTTTCACCCTCGA
CCACAGAATCACAGCGGCGTGCCTCCACTCGTATTGCAGCTCTTTTACAG
CGGATATTCTGGCTCCATGTGCAAGAAAAAAACGTCTCCATGTTCTCCGC
CACAACACGGCGGCGTGCGAACGGAGATGTATTTATGCTATTCTGTCGGA
TGAAAAAGGTGCAGTAGCACATCATATCCGTGCTTTACACTCACTCATGT
CTACAACTTTTCGAGCAGAGGGACCTTCCAAAACATAGTGTAGGTATCTG
GTCGATCCAGAATGACGAAGACGACCCCACCAACGCAGACGAACGAGGTC
GCTATCCAGATGTGCATACGTGCTTGCCAATCAATCGACTGTGTGGTATC
TTCGGTCGTTTTCCCCTCCACTCGGTGCCAAGGGGTGGGCCCGCTTTTCG
AGTTCTTTCACCCTCGACCACAGAATCACAGCGGCGTGCCTCCACTCGTA
TTGCAGCTCTTTTACAGCGGATATTCTGGCTCCATGTGCAAGAAAAAAAC
GTCTCCATGTTCTCCGCCACAACACGGCGGCGTGCGAACGGAGATGTATT
TATGCTATTCTGTCGGATGAAAAAGGTGCAGTAG
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