mRNA_H-paniculata_contig31671.8538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31671.8538.1
Unique NamemRNA_H-paniculata_contig31671.8538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31671.8538.1 vs. uniprot
Match: D7FZJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ1_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-18
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 ETGLMRLSLGNRHYADPIARAAGMVVASFPPVSEDTWGCVILSRLPVV 144
            ETGLMRL+LGNRHYA  +ARAAGMV+A+  PV+EDTWGC ILSRLPV+
Sbjct:   53 ETGLMRLTLGNRHYAGAVARAAGMVLAAAAPVAEDTWGCAILSRLPVL 100
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BLAST of mRNA_H-paniculata_contig31671.8538.1 vs. uniprot
Match: A0A162UFM5_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162UFM5_PHYB8)

HSP 1 Score: 48.1 bits (113), Expect = 4.920e-5
Identity = 20/49 (40.82%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 ETGLMRLSLGNRHYADPIARAAGMVVASFPPVSEDTWGCVILSRLPVVR 147
            E+  MR+ +GNR +A  IA   G  +   P   E TWGC++LS+ P++R
Sbjct:  732 ESDTMRIIMGNRDWAQYIAEDLGYYIDYGPSTMEHTWGCLMLSKFPILR 780
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BLAST of mRNA_H-paniculata_contig31671.8538.1 vs. uniprot
Match: A0A367KAZ4_RHIST (Uncharacterized protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KAZ4_RHIST)

HSP 1 Score: 47.4 bits (111), Expect = 9.230e-5
Identity = 20/49 (40.82%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 ETGLMRLSLGNRHYADPIARAAGMVVASFPPVSEDTWGCVILSRLPVVR 147
            E+  MR+ +GNR +A  IA   G  V   P   + TWGC++LS+ P+V+
Sbjct:  475 ESDTMRIIMGNRDWAQSIAEELGYYVDFGPSSMKHTWGCLMLSKFPIVK 523
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31671.8538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZJ1_ECTSI1.600e-1877.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A162UFM5_PHYB84.920e-540.82Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A367KAZ4_RHIST9.230e-540.82Uncharacterized protein (Fragment) n=1 Tax=Rhizopu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31671contigH-paniculata_contig31671:995..1144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.149705-CDS-H-paniculata_contig31671:994..11321622929976.149705-CDS-H-paniculata_contig31671:994..1132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31671 995..1132 -
1691481094.44717-CDS-H-paniculata_contig31671:994..11321691481094.44717-CDS-H-paniculata_contig31671:994..1132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31671 995..1132 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929976.1679025-UTR-H-paniculata_contig31671:1132..11441622929976.1679025-UTR-H-paniculata_contig31671:1132..1144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31671 1133..1144 -
1691481094.456283-UTR-H-paniculata_contig31671:1132..11441691481094.456283-UTR-H-paniculata_contig31671:1132..1144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31671 1133..1144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31671.8538.1prot_H-paniculata_contig31671.8538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31671 995..1132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31671.8538.1

>prot_H-paniculata_contig31671.8538.1 ID=prot_H-paniculata_contig31671.8538.1|Name=mRNA_H-paniculata_contig31671.8538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MRLSLGNRHYADPIARAAGMVVASFPPVSEDTWGCVILSRLPVVR*
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mRNA from alignment at H-paniculata_contig31671:995..1144-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31671.8538.1 ID=mRNA_H-paniculata_contig31671.8538.1|Name=mRNA_H-paniculata_contig31671.8538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig31671:995..1144- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACCGGCTTGATGCGATTATCTCTCGGCAACCGGCACTACGCAGACCC
GATTGCCCGCGCAGCGGGAATGGTTGTCGCATCGTTTCCCCCAGTTTCCG
AGGATACTTGGGGCTGTGTCATTCTCTCGCGTCTCCCTGTGGTCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig31671:995..1144-

>mRNA_H-paniculata_contig31671.8538.1 ID=mRNA_H-paniculata_contig31671.8538.1|Name=mRNA_H-paniculata_contig31671.8538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig31671:995..1144- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATTATCTCTCGGCAACCGGCACTACGCAGACCCGATTGCCCGCGC
AGCGGGAATGGTTGTCGCATCGTTTCCCCCAGTTTCCGAGGATACTTGGG
GCTGTGTCATTCTCTCGCGTCTCCCTGTGGTCAGGTAAATGCGATTATCT
CTCGGCAACCGGCACTACGCAGACCCGATTGCCCGCGCAGCGGGAATGGT
TGTCGCATCGTTTCCCCCAGTTTCCGAGGATACTTGGGGCTGTGTCATTC
TCTCGCGTCTCCCTGTGGTCAGGTAA
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