mRNA_H-paniculata_contig31660.8535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31660.8535.1
Unique NamemRNA_H-paniculata_contig31660.8535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: D7G384_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G384_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.570e-15
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 CYHQHYPGCKAPRDFWKDNLTVHGLWPDYGDGT 99
            CYHQ++PGCK PR FW+ NLT+HGLWPDYGDGT
Sbjct:  102 CYHQNFPGCKKPRSFWEKNLTIHGLWPDYGDGT 134
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A835YUF6_9STRA (Ribonuclease T2-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.900e-10
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 CYHQHYPGCKAPRDFWKDNLTVHGLWPDYGDGT 99
            CYH   PGC  PR +W+ ++T+HG+WPDYGDGT
Sbjct:    8 CYHTDEPGCFKPRPYWRTHMTMHGVWPDYGDGT 40
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A7S2V600_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V600_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.760e-9
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    7 HQHYPGCKAPRDFWKDNLTVHGLWPDYGDG 96
            +QHYPGC+ P  FW+++LT+HGLWP Y DG
Sbjct:   82 YQHYPGCQDPLPFWRESLTIHGLWPQYEDG 111
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A0A7CMB0_9STRA (Secreted protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CMB0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.740e-7
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 CYHQHYPGCKAPRDFWKDNLTVHGLWPDYGDGT 99
            C   +Y GC+ P +F K NLT+HGLWP+Y DGT
Sbjct:   35 CSTGNYAGCENPTEFMKTNLTIHGLWPNYNDGT 67
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A5D6XQJ0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQJ0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.220e-6
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 CYHQH--YPGCKAPRDFWKDNLTVHGLWPDYGDGT 99
            C H+   +PGC+APR+FW+ + T+HGLWP++  G+
Sbjct:   46 CLHRETEFPGCRAPREFWRTHFTLHGLWPEHEAGS 80
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A7S0C0W1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0W1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.080e-6
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:    1 CYHQH----YPGCKAPRDFWKDNLTVHGLWPDYGDGT 99
            CY QH    YPGC  P   WK +LT+HGLWP++ DG+
Sbjct:   54 CY-QHRKDGYPGCLNPNPIWKSSLTIHGLWPEFTDGS 89
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A6C0LQJ0_9ZZZZ (Uncharacterized protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LQJ0_9ZZZZ)

HSP 1 Score: 50.1 bits (118), Expect = 3.590e-6
Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1 
Query:   16 YPGCKAPRDFWKDNLTVHGLWPDY 87
            YPGC  P+ +WK+N T+HGLWP Y
Sbjct:   36 YPGCLEPKSYWKNNFTIHGLWPQY 59
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A7S1G0H8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0H8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.750e-6
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1 
Query:   16 YPGCKAPRDFWKDNLTVHGLWPDYGDGT 99
            YPGC  P   W+ +LT+HGLWP Y DGT
Sbjct:   82 YPGCMDPDPIWRYSLTIHGLWPQYTDGT 109
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A7S2UGE4_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGE4_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 5.820e-5
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 1 
Query:   22 GCKAPRDFWKDNLTVHGLWPDYGDGT 99
            GC+ P DFWK +LT+HGLWP+  DG+
Sbjct:   67 GCEHPDDFWKADLTLHGLWPERKDGS 92
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BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Match: A0A6C0HBI1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HBI1_9ZZZZ)

HSP 1 Score: 46.6 bits (109), Expect = 6.880e-5
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 1 
Query:   16 YPGCKAPRDFWKDNLTVHGLWPDY 87
            YPGC AP+ +W++N T+HGLW  Y
Sbjct:   40 YPGCLAPKPYWQENFTLHGLWAQY 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31660.8535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G384_ECTSI3.570e-1578.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUF6_9STRA1.900e-1060.61Ribonuclease T2-like protein n=1 Tax=Tribonema min... [more]
A0A7S2V600_9STRA2.760e-963.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0A7CMB0_9STRA3.740e-757.58Secreted protein n=1 Tax=Thraustotheca clavata Tax... [more]
A0A5D6XQJ0_9STRA1.220e-648.57Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0C0W1_9STRA2.080e-654.05Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A6C0LQJ0_9ZZZZ3.590e-662.50Uncharacterized protein n=2 Tax=viral metagenome T... [more]
A0A7S1G0H8_9STRA4.750e-660.71Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2UGE4_9STRA5.820e-561.54Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A6C0HBI1_9ZZZZ6.880e-558.33Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31660contigH-paniculata_contig31660:224..325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue4.1e-12
Seed eggNOG ortholog2880.D7G384
Preferred nameRNY1
KEGG koko:K01166,ko:K07870,ko:K14430
KEGG TC2.A.47.2
KEGG Pathwayko04137,ko04214,map04137,map04214
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000902,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005775,GO:0005829,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009653,GO:0009987,GO:0012501,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0031974,GO:0032502,GO:0032989,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048856,GO:0048869,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.ribonuclease T2 activity
EggNOG OGsKOG1642@1,KOG1642@2759
Ec32 ortholog descriptionRibonuclease T2-like
Ec32 orthologEc-03_004910.1
EC3.1.27.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03016,ko03029,ko04031
Exons1
Model size102
Cds size102
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.958788-CDS-H-paniculata_contig31660:223..3251622929975.958788-CDS-H-paniculata_contig31660:223..325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31660 224..325 +
1691481094.3660412-CDS-H-paniculata_contig31660:223..3251691481094.3660412-CDS-H-paniculata_contig31660:223..325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31660 224..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31660.8535.1prot_H-paniculata_contig31660.8535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31660 224..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31660.8535.1

>prot_H-paniculata_contig31660.8535.1 ID=prot_H-paniculata_contig31660.8535.1|Name=mRNA_H-paniculata_contig31660.8535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
CYHQHYPGCKAPRDFWKDNLTVHGLWPDYGDGT*
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mRNA from alignment at H-paniculata_contig31660:224..325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31660.8535.1 ID=mRNA_H-paniculata_contig31660.8535.1|Name=mRNA_H-paniculata_contig31660.8535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at H-paniculata_contig31660:224..325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTATCACCAACATTACCCCGGATGCAAAGCCCCGCGAGACTTCTGGAA
GGACAACTTGACCGTCCACGGGCTGTGGCCTGACTACGGAGACGGAACGT
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig31660:224..325+

>mRNA_H-paniculata_contig31660.8535.1 ID=mRNA_H-paniculata_contig31660.8535.1|Name=mRNA_H-paniculata_contig31660.8535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig31660:224..325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTATCACCAACATTACCCCGGATGCAAAGCCCCGCGAGACTTCTGGAA
GGACAACTTGACCGTCCACGGGCTGTGGCCTGACTACGGAGACGGAACGT
GATGTTATCACCAACATTACCCCGGATGCAAAGCCCCGCGAGACTTCTGG
AAGGACAACTTGACCGTCCACGGGCTGTGGCCTGACTACGGAGACGGAAC
GTGA
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