mRNA_H-paniculata_contig316.8523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig316.8523.1
Unique NamemRNA_H-paniculata_contig316.8523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.420e-34
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = 1
Query:  355 DDDDVVKEVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
            DDD +  +  +  M IPDGFR+QAS PA LDN L++RG L+ L MG FGGLITR+SQERT H+YDYR+HL  DQS R MKL L+ Y  DP+  VG+W+LLE N  +QV+
Sbjct:    9 DDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVD 117          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.050e-32
Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  394 MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
            M IPD FR+QA  PA LD SL++RG L+GL MG FGG+ITR+SQERT H+YDY +HL  DQS RSMKLPL+ Y  DP+  VG+W+LLE +  +QV+
Sbjct:   10 MEIPDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVD 105          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 5.790e-31
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 1
Query:  352 LDDDDVVKEVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
            ++ DD ++      M IPDGFR+QAS PA LDNSL++RG L+ L MG FGG+ITR+SQERT H+YDYR+HL  D+S RSMKLPL+ Y  DP+  VG+W+LLE N  +QV+
Sbjct:  543 MESDDEIRA-----MEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVD 647          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.190e-30
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  349 LLDDDDVVKEVGVVD-MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE 681
            L+DDDD ++    +  M IPDGFR+QAS PA LD+SL++RG L+ L MG  GG+ITR+SQERT H+YDYR+HL  DQS RSMKLPL+ Y  DP+  V +W+LLE +  +QV+
Sbjct:  105 LVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILLERSTVEQVD 215          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.850e-28
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
Query:  346 TLLDDDDVVKEVGVVD-MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLL 654
            +L+DDDD ++    +  M IPDGF +QA  PA +D+SL++RG L+ L MG FGG+ITRKSQERT H+YDYR+HL  DQS  SMKLPL+ Y   P+  VG+W+LL
Sbjct:  250 SLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILL 353          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB97_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.230e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  307 KRVGE*EICHTHPTLLDDDDVVKEVGVVD----MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
            K++G  +       LLDDDD +      D    M IP GFR+Q  +P  LD  L +RG L+ L MG FGGLI ++SQ+ T H+YDY + L+ DQS R MKL LD Y+ DP+ AVG+WVLLE
Sbjct:    3 KKIGTSQTQTDELALLDDDDSMDPQDPEDETQGMEIPTGFRIQEVKPVALDRLLFRRGVLVRLGMGWFGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLLLDEYTGDPDAAVGSWVLLE 123          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.130e-26
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
            LLDDDD       E  +  M IP GFR+Q ++P  L   L++RG L+ L MG FGGLIT++ Q+ T H+YDY + L+ DQS R MKLPLD YS D + AVG+WVLLE
Sbjct:   18 LLDDDDSTDPQNPEDEIQGMEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE 124          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5KMY4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.470e-25
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
            LLDDDD +     E  +  M IP GFR+Q + P  LD  L++RG L+ L MG FGGLIT++SQ+ T H+YD  + L+ DQS R MKLPLD YS D + AVG+WVLLE
Sbjct:  105 LLDDDDSMDPQDPEDEIQGMEIPAGFRIQKATPVALDRLLLRRGVLVRLGMGGFGGLITQQSQKDTRHLYDCCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE 211          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5K0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.300e-25
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
            LLDDDD +     E  +  M IP GF +Q ++P VL+  L++RG L+ L MG FGGLIT++SQ+   H+YDY + L+  QS R MKLPLD YS D + AVG+WVLLE
Sbjct:   60 LLDDDDSMDPQDPEDEIQGMEIPAGFHIQEAKPVVLERLLLRRGVLVRLGMGWFGGLITQQSQKDIRHLYDYCVQLELHQSTRKMKLPLDKYSGDSDAAVGSWVLLE 166          
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Match: A0A6H5JYC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.820e-25
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  349 LLDDDDVVK----EVGVVDMVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHVYDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLE 657
            L+DDDD +     E  +  M IP GFR+Q + P  LD  L++RG L+ L MG FGGLIT++SQ+ T HVYDY + L+ DQS R +KLPLD YS D + AVG+WVLLE
Sbjct:  303 LVDDDDSMDPQDPEDEIQGMEIPAGFRIQEANPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHVYDYCVQLELDQSTRKIKLPLDKYSRDSDAAVGSWVLLE 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig316.8523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHL7_9PHAE2.420e-3458.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW4_9PHAE9.050e-3261.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE5.790e-3158.18C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2B3_9PHAE1.190e-3057.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J8_9PHAE4.850e-2856.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB97_9PHAE4.230e-2648.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE6.130e-2653.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMY4_9PHAE1.470e-2554.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0X8_9PHAE5.300e-2552.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC4_9PHAE6.820e-2554.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig316contigH-paniculata_contig316:1573..3108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue2e-19
Seed eggNOG ortholog2880.D7FI08
Hectar predicted targeting categoryother localisation
EggNOG OGs2DCSR@1,2S5KN@2759
Ec32 ortholog descriptionC2H2 zinc finger protein.
Ec32 orthologEc-02_001040.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size681
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig316.8523.1prot_H-paniculata_contig316.8523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig316 1573..1860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.5322819-CDS-H-paniculata_contig316:1572..18601622929973.5322819-CDS-H-paniculata_contig316:1572..1860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig316 1573..1860 -
1691481093.295739-CDS-H-paniculata_contig316:1572..18601691481093.295739-CDS-H-paniculata_contig316:1572..1860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig316 1573..1860 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.6843054-UTR-H-paniculata_contig316:1860..19841622929973.6843054-UTR-H-paniculata_contig316:1860..1984Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig316 1861..1984 -
1691481093.3072467-UTR-H-paniculata_contig316:1860..19841691481093.3072467-UTR-H-paniculata_contig316:1860..1984Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig316 1861..1984 -
1622929973.7001762-UTR-H-paniculata_contig316:2839..31081622929973.7001762-UTR-H-paniculata_contig316:2839..3108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig316 2840..3108 -
1691481093.316561-UTR-H-paniculata_contig316:2839..31081691481093.316561-UTR-H-paniculata_contig316:2839..3108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig316 2840..3108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig316.8523.1

>prot_H-paniculata_contig316.8523.1 ID=prot_H-paniculata_contig316.8523.1|Name=mRNA_H-paniculata_contig316.8523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MVIPDGFRLQASRPAVLDNSLVKRGALLGLSMGRFGGLITRKSQERTSHV
YDYRLHLQKDQSIRSMKLPLDGYSTDPNPAVGAWVLLEPNEEDQVE
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mRNA from alignment at H-paniculata_contig316:1573..3108-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig316.8523.1 ID=mRNA_H-paniculata_contig316.8523.1|Name=mRNA_H-paniculata_contig316.8523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1536bp|location=Sequence derived from alignment at H-paniculata_contig316:1573..3108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGTTCTCATGCCACCTCACCGAAACGCAAACAGGAAGCAATTCAGATA TTGTTATCCAATTTGTAGCGGTACAATGTCATACTCCACATACGAGGGTG CCGGTCCAGCTGCCCAGACAACATACAAGAGACAGCGGGCGGCAAGGCCC ATCGCTTGATCAGGATACTATCTCTTCCTCCTCGAGTATAACCAACTTTT TGGGAGAGGCTTGATTTAGCGGGAGACTCGCTCTTGCCCTGTGCAAAGCT GTCAAGCCAGGCCTCACAGGTGGGTTGTTTGATCAGTCAACTGCAAATTT GCAACGGCGGATATCCCCAGCTAATTAGACCAGGTCAGAGGTTTCATGTG CCAACGAAGGAGGCATGGACATACGACACGGGTAGTGCAATTGGACAGCA GATGTAGAACGAGATATCATCTCCTCATGATAGTATACTATTTCGTGGAT TACTGGTGTACTCGTGTGCTGTTTGTAGACTGCCAACACCACGTTGTAAA TTTGTAATCATTTGTAGCAAGAAGGATCTCCTACACGTACCAGGTACCAG GTACGATCTTTTTCCCTAGGGGAATTGACACTCAAGTATCATCGTACTGC CGCGCGTCTTTCGCGATGACCCTTCTTGGGATTTTCTTCATTGGCTCATT GGTGGTACTACTGTTACTTTCTGCTTTCGAGCTGCCACAATAGATACGTC CAGCAGCGTCGGGTGTGTTTATGCTGCCTTTATAAAAAAAATCTGATTGG GCGGCGTGCTCTTGAACAGACATTCAATCGGTTTTTCAGAGAGTGAGTGA GCTTGTGTCGCAAAATTTGTTCCAGAACACACACGTGACTGTAGTAATAG GAGACTTGATCCGTGTAGCAAAAAAAGAAAATGCAGTACAAGCTGTGACT TCGTGTATCCTTTTCGCAGCAAAAACGATAAAAAGACGGACAGATAAGAT GGCTACATATTATGCGAATGTCAGATGTTTCCATCGTACGAAAACGATAC AATAGTACAGACAATAATTGGCCCTACAGAAAGAACCACCATACTACATA ATAGATCACCTGCTAAGAAACCGAGGTTCGTTTCTTCAAGATTTTAACAA TCCATACTAAGAAATTGTGCGCAGATCACGGCGACAACAAGGATTAGAAA TCGAGAGATGCAAGAGGGTCGGCGAATAAGAAATCTGCCATACACACCCG ACGCTGCTGGACGATGATGACGTGGTGAAGGAAGTCGGTGTCGTTGACAT GGTGATTCCCGATGGATTTCGCCTGCAAGCTTCGAGGCCAGCTGTTCTAG ACAATTCTTTAGTAAAGCGTGGAGCACTACTGGGACTGAGCATGGGGCGG TTTGGCGGGTTGATCACTCGCAAGTCTCAGGAGCGGACTAGCCATGTATA CGACTACCGTCTGCATCTGCAGAAAGACCAAAGCATACGTAGCATGAAGC TTCCATTAGATGGGTACAGCACAGACCCCAACCCGGCGGTGGGTGCGTGG GTTTTGCTAGAGCCGAACGAGGAAGATCAAGTCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig316:1573..3108-

>mRNA_H-paniculata_contig316.8523.1 ID=mRNA_H-paniculata_contig316.8523.1|Name=mRNA_H-paniculata_contig316.8523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig316:1573..3108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATTCCCGATGGATTTCGCCTGCAAGCTTCGAGGCCAGCTGTTCT
AGACAATTCTTTAGTAAAGCGTGGAGCACTACTGGGACTGAGCATGGGGC
GGTTTGGCGGGTTGATCACTCGCAAGTCTCAGGAGCGGACTAGCCATGTA
TACGACTACCGTCTGCATCTGCAGAAAGACCAAAGCATACGTAGCATGAA
GCTTCCATTAGATGGGTACAGCACAGACCCCAACCCGGCGGTGGGTGCGT
GGGTTTTGCTAGAGCCGAACGAGGAAGATCAAGTCGAGATGGTGATTCCC
GATGGATTTCGCCTGCAAGCTTCGAGGCCAGCTGTTCTAGACAATTCTTT
AGTAAAGCGTGGAGCACTACTGGGACTGAGCATGGGGCGGTTTGGCGGGT
TGATCACTCGCAAGTCTCAGGAGCGGACTAGCCATGTATACGACTACCGT
CTGCATCTGCAGAAAGACCAAAGCATACGTAGCATGAAGCTTCCATTAGA
TGGGTACAGCACAGACCCCAACCCGGCGGTGGGTGCGTGGGTTTTGCTAG
AGCCGAACGAGGAAGATCAAGTCGAG
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