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Homology
BLAST of mRNA_H-paniculata_contig3151.8506.1 vs. uniprot
Match: D7G2U4_ECTSI (DUF908 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U4_ECTSI) HSP 1 Score: 121 bits (303), Expect = 2.100e-30 Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 2
Query: 125 MRIRAPTG---VGQPKPRPSAELEPLKSAVLSAKTDNELMAAVGLVGGEDQWEEQPDLYDWCDVLDRLDEALETAILRCPTLLLIQANQQQ 388
MRIRA +G VGQP+PR S ELEPLK A+L AKTD EL+AA+ LV GED+WEEQPDLYDWCDVLDR+DE LET +LR P+LLLIQ Q
Sbjct: 1 MRIRASSGAGGVGQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQ 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 517 |
| Cds size | 393 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3151.8506.1 >prot_H-paniculata_contig3151.8506.1 ID=prot_H-paniculata_contig3151.8506.1|Name=mRNA_H-paniculata_contig3151.8506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MRIRAPTGVGQPKPRPSAELEPLKSAVLSAKTDNELMAAVGLVGGEDQWE EQPDLYDWCDVLDRLDEALETAILRCPTLLLIQANQQQSSTAAATTKSPV PEAERLSATAGVERSDGGLGAAFEEEGAASL back to topmRNA from alignment at H-paniculata_contig3151:7657..15304+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3151.8506.1 ID=mRNA_H-paniculata_contig3151.8506.1|Name=mRNA_H-paniculata_contig3151.8506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7648bp|location=Sequence derived from alignment at H-paniculata_contig3151:7657..15304+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGCAACGCTGTGAGGAGAGAGGTATATTTTGCACCCTAGCGTTCGAAGG
AAGAAAGAAGAGAGTGCTGAGAGATAGCGTAACTCTCTGGGTAAAGGTTC
AGGTAAACAACGTGTGAGATCATGTGTGTTTGCACTATCTGTGGTGAGGC
GGGTCTTGTATATTTTGCCCCTCTGTGTTCTCCTGCAAAGTGTGCAGAGC
AGGTGTTGTGCAGGGCCAAGTACAGAAAGTAGCGCCGAGATAGGACGTTG
CCTTGGACCAGGAGGGGTGCACAAACAACCAGTATGAAGATGAGAGGATC
TGGTGAATACCGTAGATTGTGTCTCAACGGCGAACTCTCTAGTGCTAATT
TTCATCTGTACCGTCATTGAGTTGACCGCGAGCAACTATAGCAGGGTTGT
GGGTGTCCTGTTGGCCTTGCTTGACCCTCTTGGCTCCTTCCTGAGGTGCA
GTTCTTGTAGTAGGTACTGTCACCGTACCAGTGCAGTGACCTTCCGCCTT
ACACCAGTGATGAGGATTCTCTAGCTCAGTTTTTTTGGCCCGTAGATGCT
GCCTAGACCCAGTTACCCATTTGTGCAATCTCGTCGCTCCTTCGTCACGA
GAGAAAGTTGCCCGCGCTCCCTAGCTCCAGCTGGACATACAGGGAAAAAT
TGCTCTGCTTCGATCATTTTCGCTGAACGACGTGATCCACAGCAGTAGTC
AGCGTTTGTGTGTCATTATCAGAGCCACGCGACTTGTTCATCCCTCTGTG
AATGTGCGCGTTTTAATGCCCGCTGTTCCTTCACCTGCGGCACTAACCAC
GCACGTTTTGTCATAGATACGAGGTGTCCAGCACATCCCTCTGGTCATGT
CGCGCGTTGTCTCCATCTCTTTTGGACTGGCCGTTGTGGCGAAGCTCACA
TGCCCCTTGTTGCATGTCCGTATTTTAGCATGCTAAATATGATACCTGAA
CCTGATATTTTCGTGCTCAAGCTCGCTGGCTTCCACTAGACCAAGCATCC
CACACAGCTCGCATGACATACAGCTTGAGGGTCAGAAACACAGCGGAAAG
CAAAGCACAAAAAGTACAAGCTCGGATCGATGTGTTCCCACAAGACAGAG
AATTCCACGTCCCTGCTTCCCGCAAAGCACATGGATGGTATTTAGTCCAG
AAGCAAAGAGGGGGTCGTTGAATCTGGAAATGTGGTGCTGACTTGAAGGA
TCAGGTGGGGGAAGTTTCAAAAACAAGTGAGATATCCATTTCGCATGGAA
TGCTCGCGCTCTTGTAGTTTTTAGTTTCTAAAGCACATCTCATGCTCAAA
ACTGTTTTCTTGTCGTGATTGTCTTGGGACAAACGGCGACTGTTTATTCT
GAATCCTGTTGTTCCGAGTGAACTATTGAAGTCAGTTGATATTCCACGTG
GCGACTTTATTTGTTTCCCCCTCAAAAGCTTCCCGTTCATCACAAAACGT
TGGGGCTTCTGTGCTTTTGCTAATATCGGCGTTTCTCCTGGATTGTTTTT
TCTTCATCTTCAGTTGCATTTGTTGTGCGGAAATAATCAGCCAATCAGCA
TCTGCGCTTTTCGCCTCACTTGGTACTTTCTCGTTGGTTGCGATATAGAC
AACCATCTAGATGTCATATAGGTGTATGTTACTGTACATGGAAAAATGTC
CATGTATCAAGCACAACACTATACCCAAACTTACACGCGTAGGAAGAGAC
TAAACGTCGATTGTGAAGTTATGCCTCAAGGATGTATTTTGAAAGTCCCT
TGATACGACGAAAGGAGTACGAAATAATTTTTCCCCTGTAAGTATGTACG
TAGATTTGCGTACGCAACGGATTTGAAAAGATCCTAGGGCCGATCTTTTC
AGGTCGGTTGCCGTGAAAATCTATGTGGTCGTCGTCACTATGCATGGAGA
GAATGAGAGAGTGAAAAAGGGGAGAGGATTAGGGGGGGAGACTGAGCTTT
TCCGGACGTCTTCGTGCGTTCTTTTTTGACAAAATCCAGATTGCACCCTA
ACTACAAGATCGTCCATCATTCAATAGAGAAACATTCGATATTCAGGTCC
TCTAGGAGAGGAGAGCGCGGAGGGGGGGGTGCATGTTTGACATTAGCGCA
TGGTTTGACCGCAACTGTTGACCTCGCACCAGTGCATGCGGGGTAGGCGA
TGATTATCTAACATGTCCTGTAGTCGGAGAAAATTGACCTCGAATCCGTG
CTAGTCGGAGAACGAGTGGTGCACCCGGGTTTTGTTGTTCGACGCCGGGA
GTCACAAGGATGGTGGTAGTTTCACGTTATACTCCTTGTGTTGAGTGGGC
CAAAAGTGAATACCGTCGGGGTATGAGCATGATGAATATCCATCAAAAAC
TGGACAAGGGAGGGCGGGTCGTCAACAACGTAGTTAAAACCGTCATGCGA
CACTCTCTACACGTCTGGGGAGAGCTAACTGCTCCTTGCATGTGTGCACG
CGCCATAGGACACGAAACAGTACAGTTTTTCTCTCGCGGGGACGGGGGAA
GATGTTCCGGGTCCTGCACGGTTGACCATTCTCTGGATTATTTTCGATCT
TTTTACCACGGCCCAATTATCCTTGAGTCGACTCGATGGCCTGCGCGCGG
CCTCCATATATTGCTATTTTTCCTTTTCCCTCGATGCCCCTTCGATTACC
TTGTGGCTCCCACCCTTCCATTCATATCCCACTATTTTCCCAAGTCTGAT
TTGCGTGTTTTTTTCATTATCCTCCCACCCGTCACCTATGCTACCCGTCC
TCTCCACGGCTAGAGGTACCTTTCTGGCGGGCGCCATGCGAATACGTGCG
CCCACGGGCGTCGGGCAGCCGAAGCCCCGCCCCTCGGCTGAGCTGGAACC
GTTGAAGGTACAGTACCATTGCTGATAGTAGTGGAATAAATCTATAATAA
CAGCTGCTACCGAGTGTTTTTGTTGCAAATTCATGAATTTCTTAACTTGG
ATCAAAGATACCGTGAAAGCAGGTGTGTGAACATCACGTAAAAGTGAGAA
TAAGACGCTGCAGCCCCAAAACCGACTCACTGATGGCGCTATGCTTCGTG
AGTAAGGTAGACATCCACCTAGTGGAACAAGTGAACGATGTAAAAGTATG
ACACCGTCGAATTGAGGGCGGATATGTTCGATTGTCAACAATCACAAAAA
TAAGCTCACGGTTTTATGTGTAGATTATGTAAAATTACACATACAGCGAA
AAATTAGCGATTTTTAGTCAGTGAACTGGTGCGACTGATTTCCGAAAATC
GCCCACGACTGACAGTAGACTATTGTGACGAACTAGTCAACTCATAGCGA
AGCGACCCAAGACCATCAGTCGAGCGACCTCCCAAATCTTCGCTGAGTGT
GAGAGAAGGTCACCGGTTCTACTTTCCTGTATGCTGTCTGTGCATCGTGT
CACGTACGTCTTTTGCAGTCATGGTATGTTGTTCTGAGGTTTATTGTCAT
GTACCAGTTGGTGAATTCATGTACAGAAGTGTCTTCAGTGCGTTGATTTT
TATACGCCAGCATTGGAGGGCATTCAGGAAGCCAAGGTAACAAAAAGTTA
GATTTGGTTTGTTCGCCTGACACTAGTGTGATGTAACAATCCACATTAGC
GTACCTTTATGTGCGAAGACGCTCCCGGAAATCACCGTTCCTGATGAATT
ATTGTCTTTTCCGTGTCTTGACCTCCTGTCCGCAACAATTCATTAAATAG
GTATGAACTCTGGCATTTATTGCCTACTCCTTGACCGCGAGGAGTTCACA
TATTATTTTCTGTCGGATGAAGAATGCGGTTCTTTTTTCCTGTAATGAAT
GTACCCCGTCAACAATCTAAGACATTTCACAGTTACATGGCTGAGGATTG
CATGAAACACTCGAAAGGCTTTTGCATTGACCGGCATTGCCTTCCTTGGG
TGACATATATTTATGTCCACTTCTTCGAGAGTTTCTAGAATCGGTTTGGT
TCAGTTGTGTCGTCACAGACTTTTCCTTATATGTCCTTTTTTGTTTCAAC
CGTGGGAGAGAGACCTGACAAGTTTTGGTTCGATGATATCATCGGCGTTC
GAGTGTGGACCCCCGTTGCCTCCTCTAGCCCTTCGTGTGGTTCCGGAGCA
AAAAAGTACATTTGACAGCCCCGCTGGTACGAAGGCAGGGGGGGTGTGAG
GAGGTGCAATTTTTTTGGCGATTTGGGCGCGTGGTTCCGCAAAGGAAAGA
ATCTAGAGGTGTGGCTCGATTGCGGTCAATGAGAGACAGACACCCTATTA
ACCGCAGTAATGGCCACGTAGTGGTTACTTTGCACTAAATTGGGATCGAT
AAAGCTTGATCGGTTCTTCTCGAACCCTCTATTGTCTTTTCCTCCCTTTC
CCTTTGTTGTTCTCAGAGCGCCGTGTTGAGCGCCAAGACTGACAATGAGC
TGATGGCAGCTGTCGGGCTGGTGGGTGGTGAAGATCAGTGGGAGGAACAG
CCGGATCTATACGACTGGTGAGGGACGGGTATGGCGTCATCTACTTGATA
CCTTTTGTAGTATTTACAAATTGATACTTTGACTTCTGGGAGGAGTCTGT
TTTGACATCTTGGGGCACAAAAAATGTCACAGTCCCGTGTCCCAAAGTAA
AGCGGGGGAAGCGCATTCTGAGGGTGGAGGTAATCTCTCCGGGGTGGGAT
TTTTGCAGTCGAACACAGATTTTCGATTTTTTCGACTCGGAGAAAGTTCG
ATTTCCCATGTTCTGCGGTTGGATTTTTTGGAAATCTTAGTTGAGAAACC
CGAGACAGGAGGTACAGTCGGTCCCATTCCCCAATTTCTGGCAAAAATCA
GAGTTGCCCTCACATATCGGATTTCTTGGAGTATCACTATATGAAGGCGT
TAATATTGTTTTTCATCCAACGTTTGAATGTCACAACCCTCAGCAATGCA
CAACCACGAGGATACAGACAAGCTAAGGTGTGTGACCCCCGCCGTCATAT
AGAACTTGTGGGACTGATAGCCCGGGGGTTTCCTCCACTCAGCGGAGGAA
GCTGTCAACCGCGACTTTTGTGTACAATTCAACCGCAGCCTTGTTCCTGT
TGGCCTGAGACATGGTCCCATCATTCTGCTCTGCATTAGTACAAGCATAC
TACAGTGGTACACTCTGCAGTATCGTCCACTGTGCCTTGCTGACAGCCGA
TTTGGTCCCCTTAGCCTTGATCTCACTCCACAGCCATTCTACGCATGGGT
TCGTCGCATGATGCATTGCAGTTTACGGTACACTCATGATCGTGTGCTCT
TCAAATGGTGATGCGAGTGTGTGCAGGGATGTGTGCTGGAGGGTGGCGTG
TACGAGGATGATTTCTTGGGTGGTGTGCTCGAGGACCCAACGTGGGAGGG
TGTGTTTGAATTTTGAAACATGCCGCTTGCACTACGACGCCTACAAACTT
CCTTAAAAAAAAACTTAGGGAAATCCGACCCCATTACAAATGCGAATCGA
ACACTGAAGATCAGATTTTTGCATCCCTCGAGAAATCGGAAGAAAAGAAA
AATGACTGAAAAAATCCGACTCCGTAAGAGATGATCTGAAGATGCCGGAT
TCGGGACGGGCATAATTGTTGTGACACAACACCAACGTAACACGAAATGA
GTAGAATCGTGGAGCTGTGAATTAAATAACACCAAAAGCAAAGATGATCA
AGCGAGAATTCTTTCATTTCAACCATTGTTTGTCCACGGCTGGTTTGCTC
CAGTCCCAACGCCGTTTGTGCTTGGGCTACTGAGGTGGTACAGCTGACAG
ACTGCAGTACACACCTAGTTTTATCTGGCGGTGGAAGCCAGAGGCACCGC
GCAAATAGCACGATACACTCGGCAGAGTTCCGCACAGCGTCAAACGGAAC
AGACACCACGCTGCAGAAGAAGCGTTGATGTACGTTGCCGCAAAACCATG
TCGCCTGCGCACCTGGTGAATCTGGGGTAACGGCATTTGACATGCGCCAA
CATCTCCCGAGAATTTCGTAGCGAGCGATAGCTGCTATGTGGATGACATT
CTGTTACGCTCGAAGACAACCACAAACCTTTCGGCAGACAGTGTGCTACG
ACGGTTGTTATGGTAACCAAAACATGATATGACCTATGACGCAGTAATCG
GTAGTCCGCCTTAGGCTTGCTGCAGAGCAGTTTGTAATTGTTCTTAGTTG
AGAGGGTAAGGCCTTGTCTTGATTCCCCATCCATAGGCGAAACGCAGGAA
ATAATCAGAACTTTGTATTGTTATTATCCGCTTCCATTTGGTCATATGAG
GTGGTTTCTGTTTCTTCTGTACCGGCAGCATAGCCTCCACCATAGATGCT
AGCAGAGTACTTCTATGCATGGTAGGGAGACAAGACCAACATAAGCGACA
AGTGATGAACAACACAAGTAGTCAACTGATGGTGTCGATGGTCCTTCATA
TTCGTCCAAAAGGTTTCTATTCAATGAGGCATAGGAATATCATTTTTGCA
AAACTTTATTTTCCCCAAGAGTTTCACATGTTTATAACAAAAAAAATGAA
GAATGTTCGTAAATAAGCTATGTTGGAGGAAAATCAAGAAAAATATGAAA
TGTTCCATGAACTGCAAGCCTAGGTTCGATACTGTGCAGTTCAGTTCTAG
GTGCCTCGCTGGTCCATTGGCGCGCTCCGTTCAGGTCACGTGGATCTCGC
TTTAGGAGCTTTTTGAAAATCTCGACGAATGTCCCTATGTTACAACCGAC
CGATATCTGTACCTTTTTTCAGTGCATGTGTGAATCCAGGTCGCGATCGT
ACAAACGTTATCTCTACGTCAGCTTTGAAGAAACAGGGGGCTTGTCCGTT
TCAATCACTTGCGGCAGTCAGGAGTCTTTTTTTGGAATTGGACAGTATCC
ACTATGCTAAACTTGATCAACTGAACAGTTCTCGTGACCTGGTTTGTTGC
GGGACGTGAAATTTGACTAGAATCAGAGACGAGGAAATTTCCCAAGAGAT
CTAATCTATTTACGTGAAATAAAAAACAGGACGTTCTAACCTTTTCGGAA
TTTTGAACTCCGTGAACGTTTGCCCCTTTCAAGGCCCAAGTCAAAATTCT
CAGATTCCATGATTTCTGTCCAAAACATGGTTGCTACAACTGGTCCTGAG
CAAAAATATATTATACTCGAAGCAAGACGTGACACTGGGTGGTCAGTGTT
GCCGGCCTTGTCAAGAGAAGAGATGAATAATAATAGCCTAATATATCCAT
GCTACTGTTTGGAAATGGAAAAGTAGAGATTACACCTCACAGAACAAAGC
CATCTGTCCTCACTGTGTCCCCTAAAATGAACTATTTCCAAAGATGCTAA
CGCCAACACCTCACTCACCCATCATCGAGCAATCGTTTCATGACCAATAT
ACTATTCCTGTGACTACTGTAAAGTTACTGATTTATATATATATATATAT
ATATATATACATTTACGTGAATAAACAGGTGCGACGTGCTCGACCGTTTG
GACGAGGCCCTCGAAACTGCCATCCTCCGATGTCCGACGCTGCTTCTAAT
TCAAGCGAATCAGCAGCAGTCCTCGACAGCAGCAGCAACAACAAAGAGCC
CTGTGCCCGAGGCGGAGCGGTTGTCTGCCACGGCGGGGGTGGAGCGCAGT
GATGGGGGTCTGGGGGCAGCATTCGAAGAAGAGGGGGCGGCAAGCCTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig3151:7657..15304+ >mRNA_H-paniculata_contig3151.8506.1 ID=mRNA_H-paniculata_contig3151.8506.1|Name=mRNA_H-paniculata_contig3151.8506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig3151:7657..15304+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCGAATACGTGCGCCCACGGGCGTCGGGCAGCCGAAGCCCCGCCCCTC GGCTGAGCTGGAACCGTTGAAGATGCGAATACGTGCGCCCACGGGCGTCG GGCAGCCGAAGCCCCGCCCCTCGGCTGAGCTGGAACCGTTGAAGAGCGCC GTGTTGAGCGCCAAGACTGACAATGAGCTGATGGCAGCTGTCGGGCTGGT GGGTGGTGAAGATCAGTGGGAGGAACAGCCGGATCTATACGACTGAGCGC CGTGTTGAGCGCCAAGACTGACAATGAGCTGATGGCAGCTGTCGGGCTGG TGGGTGGTGAAGATCAGTGGGAGGAACAGCCGGATCTATACGACTGGTGC GACGTGCTCGACCGTTTGGACGAGGCCCTCGAAACTGCCATCCTCCGATG TCCGACGCTGCTTCTAATTCAAGCGAATCAGCAGCAGTCCTCGACAGCAG CAGCAACAACAAAGAGCCCTGTGCCCGAGGCGGAGCGGTTGTCTGCCACG GCGGGGGTGGAGCGCAGTGATGGGGGTCTGGGGGCAGCATTCGAAGAAGA GGGGGCGGCAAGCCTGGTGCGACGTGCTCGACCGTTTGGACGAGGCCCTC GAAACTGCCATCCTCCGATGTCCGACGCTGCTTCTAATTCAAGCGAATCA GCAGCAGTCCTCGACAGCAGCAGCAACAACAAAGAGCCCTGTGCCCGAGG CGGAGCGGTTGTCTGCCACGGCGGGGGTGGAGCGCAGTGATGGGGGTCTG GGGGCAGCATTCGAAGAAGAGGGGGCGGCAAGCCTG back to top
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