mRNA_H-paniculata_contig3150.8504.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3150.8504.1
Unique NamemRNA_H-paniculata_contig3150.8504.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3150.8504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3150contigH-paniculata_contig3150:4700..9491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1232
Cds size1008
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3150.8504.1prot_H-paniculata_contig3150.8504.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3150 4700..9267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.935931-CDS-H-paniculata_contig3150:4699..56251622929970.935931-CDS-H-paniculata_contig3150:4699..5625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3150 4700..5625 -
1691481092.1209102-CDS-H-paniculata_contig3150:4699..56251691481092.1209102-CDS-H-paniculata_contig3150:4699..5625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3150 4700..5625 -
1622929970.957978-CDS-H-paniculata_contig3150:9185..92671622929970.957978-CDS-H-paniculata_contig3150:9185..9267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3150 9186..9267 -
1691481092.1301415-CDS-H-paniculata_contig3150:9185..92671691481092.1301415-CDS-H-paniculata_contig3150:9185..9267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3150 9186..9267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.969649-UTR-H-paniculata_contig3150:9267..94911622929970.969649-UTR-H-paniculata_contig3150:9267..9491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3150 9268..9491 -
1691481092.1385598-UTR-H-paniculata_contig3150:9267..94911691481092.1385598-UTR-H-paniculata_contig3150:9267..9491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3150 9268..9491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3150.8504.1

>prot_H-paniculata_contig3150.8504.1 ID=prot_H-paniculata_contig3150.8504.1|Name=mRNA_H-paniculata_contig3150.8504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp
MNPNSRERMEDVDKARVLEQDAEERYLGTTTTASEAAAMTATATAQQQHG
PAQDINDASNNPVGDDSTRSEEVFQKSDTAAVSGNTIGDDRNEYQYVAKN
LPSARPQPTLRDVTAASMTSDARGSANAAAATAAAAAVGGEGRGDGCYGA
GATSSGCDARIREGEALLASSSSSSSNDGVGAEEGATVAAGGGAAEEGNR
KEGRANASGATESTTTAEHGGRGDGDCSGGLSSAGVSDRFPENSSSSSSD
CSIERSASSSPSSSRSCSVPGSCPATANEPDPPDAHATAANWNGVDGVAK
PAISPADEASNRKNEEDPSVDVLSPSSAKLGGLGET
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mRNA from alignment at H-paniculata_contig3150:4700..9491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3150.8504.1 ID=mRNA_H-paniculata_contig3150.8504.1|Name=mRNA_H-paniculata_contig3150.8504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4792bp|location=Sequence derived from alignment at H-paniculata_contig3150:4700..9491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGATTCTGTTGTGACGGGTCAGATCACCTGTATCGATATTTGACACCG
AAGAATGCAAGTGCGCTGGGGTTAAATTTCTTGAGAAGTTTCGATCCTGA
AGCATCTGTTGCGCCAAGTGCTTCTGCTGTAAAACGGAAGGGATTGCCGA
GGAACTGCGGTGGAACCCCTGCCCTACTGACGCCACCCCTCTCTATTAAA
TCCTCTTCGAGACCGCGTTCCGAAATGAATCCTAACAGTAGAGAACGTAT
GGAAGACGTAGACAAAGCTAGGGTATTGGAGCAGGATGCCGAAGAGCGAT
ATTTAGGTGAGAGATATGCTGTCCCACGTATCTCATCTGACGCTTTAGCA
GTTGGCATATCCCTAAACAATGATCCTCAAATGTACACATTTCTACGGCC
GCAACGATGGCTGTCTGTACTCCGCACAAAGCACAGTACAGAAGCGTTGT
TTTTACAGACAAAAATGCAGTACAGCACAGCTGAATAGTACGTAGTCAGT
AGGCGTATCCGGGACGGGAAACGAGAACATGATGGTGTCTCCATTGTACT
CTATATCATTGCTGCTAGCTACCCAGCGGTCATTTGCAGGTGATGGATAG
GCTTGAAACCAAACCATCTTTGCGGAGGACAGATGCGGGATACTAATGTA
TAATGCCAGCATTCGTTCTTGAATAATACCATGTGTTGTTGCTATTGAAC
GGGATTTTTTTGAATTTATGAAACGGCCCTCGAAAGGGGCATATTAATAA
AGCGACAGTCGGTGGGAACAACGTGAAGTAGTTAGTTTTTCCAACGTCCA
AGTATATACCCTGCTATCGCCAAGGTAATTTTTCACGGTATTCAGAGATC
GTTTTACCGCGGGGAAGTAAGTACCTTGCACCATATTTTGAAGATAAGGT
GATCGGGACTTGAAGTTCCCAAAAACTAACGACCAGATATCATTCCGACA
GAGTGTATCTTCATCGCGATACTTCCAGAACCATTTTTTTCTTCGGTCTC
ACAAGATCCGATTTTTTTTCCCGTGCACCCCTGAAGAATACGTGCGTGAG
AGAAAAACCAAAGAGCGTGTTTCAACTTCTGAACCCTTTTACATTTAACA
GCGGACACGGAGACTGGGTAGAACCATGAACCAACATATCGAAGATCTCT
TCATGTTGGCGCTGTTTATGCTGTACTGAACTCTCTATCTGAACAGCCAT
GGCTCCTTATCCCCGCAATCGTGTCACAGGCGTCATTTCTCTCTGTGTTT
GAGATAGGATGTTAGGTCGGAACTATACCACCGTCAACTCCAGCGTTGAT
GAGGGAGTGGGACTGCTGCCCCCACCGCGTGATACTACAAGAACCGAACC
ATTACACTCCCAGGTTCGGACGGGAGGTTCCGATAGTTGGACTAACTCCC
GAGGGGATAATACGTCAATATATATATATATATATTAATTAGGTATATTG
TGGAGAGCACCTTCCTGACGTTTTCTGAACCCCGAGCCCCTACACAGTGA
CCAATGGTATTTTGTCCCTTTCTCGGAACAGCTTTCTAGCTGTGTCCGAC
CCTCGATGGTCACTCTATCTACGACAGAATAAAACCCAAGTGCTTACTCC
GCACTACATCCCAAGACCTAGAACCGACCCGCATAGAGCAGGCGGTGTCC
CCTCGAGAACCAGTCTCTCCCGGGAGCATCGTATTCTCAATATGTAAAGA
TGGGCTCTTCCGACAGTGTCAACTTGGAAAACTCTTGCTTCTCCAGAAAC
ATCTGCATAATCCTTTCTGCACTGGAGGCTGTTTTGGAACCAAAAATACA
TGACAACAATTGTCAGAGCGGAGCGCTGCAGTCATGGTGAGCCAAACGTG
CCAGCTCTCTCTCTCTCTCTCTGTTGTATGGTAGGTCTTCTGTGTGTCTG
GACATCGTCGATCGAAACAGCACAACAGTGGCGGCTCCCTATCCCCGCAA
TCGTGTTTATGGTGGGTGTCATTCACGGTTAGGTAGGAATTCGATTGGAA
ATGGTACTAAAGTTGCACCCCCCGGACAAAAACAAATGGAGGCATTCGCA
GCTATCTCAAATTATCATTATTTGTCTTGAATAAATACGTTTCTATTCGT
TTACAAGTCCATGAGTGGTCATTCTACAGATGATCACCACGTGTCACACA
TGCAGGCCCTGTTTATTTTCCGGATGGCACTGTACATAATTGAATACTCA
TCTGTCCGAGCTGTTCGATGCCCCATGATATATCGAGTACACCGCATATT
ATTCGCGTCATATGGACATATTCCAACTCAAACAGATAGAGTATTAATTC
CAGATTCCTCGTATTTATTCCTGTCTTGTATTCGTATTTATCCGGGGGGT
GTAAAATTGTCGAGAGTACCCGACTTGACGATTTGAGCACTTCATGTATG
TATGGGAACTTTTGCAAACTCAATGTGGGATCTTTGCCGCATGAGTCATG
GTAACAAATCAACCAAGGATATGTTGAAGAAGCTTCGAAGGTCTCAACCC
CTGGGCGAATTCATGTACTTGGGATAGTTTAGACTTAAAATCAAAATCGC
CTCAAGCTTCAGTTTGAGCCCGTCCATTTTATGTGTGCCCCAGACCATGT
ACCTACCTCTGCTCCGACTATAATAATAGCAAAACGAACAGACGGGGGTC
AACAGTTTGATTGCTGAATTTAGCTGTCCGCATAATCTGAACCCTTTCGC
GAATGCTCACAACTGTTCCAAGTGTCCAAATGTTTGTATTCGTTCGTGGG
GTGAAAGCTTTGAACTGTTTTCAACCATGGATAAATGGCCACAAATGGAT
CGTGATGCCCCCCCCCCCTCAAGTGATGCGTTATTAATAGGTATTGGAGA
TTATAAGAGGTTAGTCATAAGATTTAGGAAATCATTTATTGAAGATGTTG
GTCCATTGGTCTTGTCTCCAGTAAGACGCTTCTGCTTCTGCTCTAAGGTG
CAACTACTATTTAGTACCTACTTATCTTGTCAGACCGTAAACCGCTTGCC
CCCCCCCCCCCCCCCCATTGACCTACCCTTGATAATTGTACACAACGAAG
TAATTAAACAGTTTAATAGTTCTACTACCTATCGCAATTATTTGACTTGT
GAATGAGGTTCCCCGTGCGTGAAAGGGGGAGGGTTATTTTTTCTGCCATT
TTGTTTATGTGAAAGTGGCCCCTTATTGATTTAATTTTGCTGACAAGGTC
ATAACTAAAATTTGTAGGGTTGTGAATCGGTCATGATTTAATTTATTATA
TTGCGATATATCTTATCTATCGCGTGGCAGCAAACCCGATATATCGAGGG
GCAATATATCTGGGGTCATAGAACAAGATTTACGTGGAAGAGTGACAGCA
GTAGTATGTTGCCTTTGTTTTCTTCGCGTGCTGGTTGGACGGTACGAGAA
CTGTCAGGACATGGTACCATAACGATTTGAAGGAGATTGGAAGCAACGAG
ATACAGCCGAACTAGATTCGCCGAGTGGGTCCAAAGAAAACGGATGGAGC
AAGATTGTAGGAAGTGCTGGAGTATCACGCATCACATGTCACAATAACCA
CTCAAGTCGTGTAAGGAACAAACTTGTCGATATCGGTTCGTCGCTGATGT
ATCGCCAATGTATCGATATATCGTCTGCCAGAATTCACGATATATATTCT
ATGCGCCGATATACAACCCTAAAATTTTGCCCCACCCCCCGGCCAAGTCC
TCGACAAGTACATATCCCATCGTAAGGATTCCACTTTTCTGCCCATAAGA
CATAGCCACGCCGAAGTGACCTGCGTCCTTGCGTAAACCGCATTATCGAA
ACAAACCTCACCAAAAGAAACATAAATATATTGAACGACAGAAATCCATT
TGATGTCTATACACAGGTACCACCACCACCGCATCAGAGGCGGCGGCGAT
GACCGCTACAGCGACAGCACAACAACAGCACGGGCCTGCCCAAGACATAA
ATGATGCTAGCAACAACCCTGTAGGTGATGACTCCACGCGGTCCGAAGAA
GTCTTCCAAAAGTCAGACACCGCCGCCGTCAGCGGCAACACTATTGGCGA
CGACCGCAACGAGTACCAGTACGTCGCGAAGAACCTACCATCTGCCCGAC
CCCAGCCGACGTTGCGAGACGTGACCGCCGCGTCGATGACCTCTGATGCG
CGTGGCAGCGCAAATGCCGCCGCTGCAACGGCGGCGGCGGCGGCGGTGGG
GGGGGAGGGACGTGGCGATGGTTGCTACGGAGCAGGTGCTACGAGCAGTG
GCTGTGATGCGCGGATCAGAGAAGGAGAGGCGTTGCTAGCGTCGTCATCG
TCGTCTTCGAGCAACGATGGTGTAGGTGCTGAAGAAGGTGCAACAGTAGC
AGCAGGAGGAGGAGCAGCGGAGGAAGGGAATAGGAAGGAAGGGCGGGCGA
ATGCATCGGGAGCGACAGAGTCGACTACAACGGCTGAACATGGGGGTCGT
GGTGATGGTGACTGCAGTGGCGGCTTGTCTTCTGCAGGAGTTTCCGATCG
TTTCCCTGAAAACTCTTCTTCCTCGTCTTCGGATTGTTCCATAGAACGGT
CCGCTTCTTCTTCTCCTTCTTCGTCCCGGTCTTGCTCAGTGCCTGGATCA
TGCCCAGCGACAGCAAACGAACCCGATCCACCCGATGCACACGCCACAGC
CGCCAACTGGAATGGCGTTGATGGTGTTGCGAAGCCTGCGATTTCGCCCG
CCGACGAAGCTTCCAATAGGAAAAACGAGGAAGATCCCTCTGTAGATGTT
TTATCGCCTTCTTCTGCGAAATTGGGGGGGCTGGGAGAGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig3150:4700..9491-

>mRNA_H-paniculata_contig3150.8504.1 ID=mRNA_H-paniculata_contig3150.8504.1|Name=mRNA_H-paniculata_contig3150.8504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig3150:4700..9491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCCTAACAGTAGAGAACGTATGGAAGACGTAGACAAAGCTAGGGT
ATTGGAGCAGGATGCCGAAGAGCGATATTTAGATGAATCCTAACAGTAGA
GAACGTATGGAAGACGTAGACAAAGCTAGGGTATTGGAGCAGGATGCCGA
AGAGCGATATTTAGGTACCACCACCACCGCATCAGAGGCGGCGGCGATGA
CCGCTACAGCGACAGCACAACAACAGCACGGGCCTGCCCAAGACATAAAT
GATGCTAGCAACAACCCTGTAGGTGATGACTCCACGCGGTCCGAAGAAGT
CTTCCAAAAGTCAGACACCGCCGCCGTCAGCGGCAACACTATTGGCGACG
ACCGCAACGAGTACCAGTACGTCGCGAAGAACCTACCATCTGCCCGACCC
CAGCCGACGTTGCGAGACGTGACCGCCGCGTCGATGACCTCTGATGCGCG
TGGCAGCGCAAATGCCGCCGCTGCAACGGCGGCGGCGGCGGCGGTGGGGG
GGGAGGGACGTGGCGATGGTTGCTACGGAGCAGGTGCTACGAGCAGTGGC
TGTGATGCGCGGATCAGAGAAGGAGAGGCGTTGCTAGCGTCGTCATCGTC
GTCTTCGAGCAACGATGGTGTAGGTGCTGAAGAAGGTGCAACAGTAGCAG
CAGGAGGAGGAGCAGCGGAGGAAGGGAATAGGAAGGAAGGGCGGGCGAAT
GCATCGGGAGCGACAGAGTCGACTACAACGGCTGAACATGGGGGTCGTGG
TGATGGTGACTGCAGTGGCGGCTTGTCTTCTGCAGGAGTTTCCGATCGTT
TCCCTGAAAACTCTTCTTCCTCGTCTTCGGATTGTTCCATAGAACGGTCC
GCTTCTTCTTCTCCTTCTTCGTCCCGGTCTTGCTCAGTGCCTGGATCATG
CCCAGCGACAGCAAACGAACCCGATCCACCCGATGCACACGCCACAGCCG
CCAACTGGAATGGCGTTGATGGTGTTGCGAAGCCTGCGATTTCGCCCGCC
GACGAAGCTTCCAATAGGAAAAACGAGGAAGATCCCTCTGTAGATGTTTT
ATCGCCTTCTTCTGCGAAATTGGGGGGGCTGGGAGAGACGGTACCACCAC
CACCGCATCAGAGGCGGCGGCGATGACCGCTACAGCGACAGCACAACAAC
AGCACGGGCCTGCCCAAGACATAAATGATGCTAGCAACAACCCTGTAGGT
GATGACTCCACGCGGTCCGAAGAAGTCTTCCAAAAGTCAGACACCGCCGC
CGTCAGCGGCAACACTATTGGCGACGACCGCAACGAGTACCAGTACGTCG
CGAAGAACCTACCATCTGCCCGACCCCAGCCGACGTTGCGAGACGTGACC
GCCGCGTCGATGACCTCTGATGCGCGTGGCAGCGCAAATGCCGCCGCTGC
AACGGCGGCGGCGGCGGCGGTGGGGGGGGAGGGACGTGGCGATGGTTGCT
ACGGAGCAGGTGCTACGAGCAGTGGCTGTGATGCGCGGATCAGAGAAGGA
GAGGCGTTGCTAGCGTCGTCATCGTCGTCTTCGAGCAACGATGGTGTAGG
TGCTGAAGAAGGTGCAACAGTAGCAGCAGGAGGAGGAGCAGCGGAGGAAG
GGAATAGGAAGGAAGGGCGGGCGAATGCATCGGGAGCGACAGAGTCGACT
ACAACGGCTGAACATGGGGGTCGTGGTGATGGTGACTGCAGTGGCGGCTT
GTCTTCTGCAGGAGTTTCCGATCGTTTCCCTGAAAACTCTTCTTCCTCGT
CTTCGGATTGTTCCATAGAACGGTCCGCTTCTTCTTCTCCTTCTTCGTCC
CGGTCTTGCTCAGTGCCTGGATCATGCCCAGCGACAGCAAACGAACCCGA
TCCACCCGATGCACACGCCACAGCCGCCAACTGGAATGGCGTTGATGGTG
TTGCGAAGCCTGCGATTTCGCCCGCCGACGAAGCTTCCAATAGGAAAAAC
GAGGAAGATCCCTCTGTAGATGTTTTATCGCCTTCTTCTGCGAAATTGGG
GGGGCTGGGAGAGACG
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