mRNA_H-paniculata_contig315.8502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig315.8502.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE) HSP 1 Score: 327 bits (839), Expect = 8.100e-98 Identity = 199/362 (54.97%), Postives = 238/362 (65.75%), Query Frame = 1
Query: 16 WGPGVSLITVSAWQSFVALCAGLVMSRAQRKSAWRRVA--EARPLVDAERTRRNRCLFVFAVAHLLGSALEYHSYGVVGSVAAEALRATETALFLALSLYFFRVHRRGLAALPTLLLAFGLALGAAPATGDLRVDGVGLEFSLAANFLLAVRAVTAKMAMDDYGVDEVSTVFSGIKMTAALQVVVLLTIEVPRAATGRSPCLLPHLWGVGMEEHEYAGAGSSTGVDHYAAADRGVLGGRGEGWVSGEERVKLTLLLVVNGLFLYGHVLALFALLSRLSSTAFAIVSGYVRAALVFVLLLSLKGSTTYPRSVGMLLSTIAVVVHFYRTYAGSSPRHKPSISMVGGGQSEV-----LKDGGESG 1080
WG GVS++TVSAWQ+ AL G +MSR WRR E R L D ERTRRN+ L VFA AHL G+ LEYH YGV+G+ AAE LR+TE A F LSL + R GLA++PTLLLA GLAL A P GDLR GL SLAAN LLAVRA+ AKMA+DDYG+DE+S +FSG MTA LQ ++LL +EVPRAA G SP LLPHLWGVG+ E + G + G+ G W G ER +L LL+ NG+FLYGH+L LFALLSRLS+T FAI SGYV AALVFVLLL+L+GS PR VGM L+T+AV HFYR Y R + + S++ + DGGE+G
Sbjct: 344 WGKGVSVVTVSAWQTLAALGFGFLMSR-----FWRRFRRPEVRALSDGERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAACFCLLSLNV-GMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANILLAVRAIAAKMALDDYGLDEISALFSGATMTAGLQSLILLVVEVPRAAAGLSPRLLPHLWGVGVMEIDRQQPGGPV----LSGEGAGIGVGDAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGYVHAALVFVLLLALRGSAAGPRMVGMSLATLAVSAHFYRAYV----RGRATSSLLNSADNADGLPCDADDGGEAG 691
BLAST of mRNA_H-paniculata_contig315.8502.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI) HSP 1 Score: 303 bits (777), Expect = 1.700e-90 Identity = 188/362 (51.93%), Postives = 226/362 (62.43%), Query Frame = 1
Query: 16 WGPGVSLITVSAWQSFVALCAGLVMSRAQRKSAWRRVA--EARPLVDAERTRRNRCLFVFAVAHLLGSALEYHSYGVVGSVAAEALRATETALFLALSLYFFRVHRRGLAALPTLLLAFGLALGAAPATGDLRVDGVGLEFSLAANFLLAVRAVTAKMAMDDYGVDEVSTVFSGIKMTAALQVVVLLTIEVPRAATGRSPCLLPHLWGVGMEEHEYAGAGSSTGVDHYAAADRGVLGGRGEGWVSGEERVKLTLLLVVNGLFLYGHVLALFALLSRLSSTAFAIVSGYVRAALVFVLLLSLKGSTTYPRSVGMLLSTIAVVVHFYRTYAGSSPRHKPSISMVGGGQSEV-----LKDGGESG 1080
WG GVS++TVSAWQ+ AL G +MSR WRR E R L DAERTRRN+ L VFA AHL G+ LEYH YGV+G+ AAE LR+TE A F LSL + R GLA++PTLLLA GLAL A P GDLR GL SLAAN LLAVRA+ AKMA+DDYG+DE+S +FSG KMTA LQ ++LL +EVPRAA G SP LLPHLWGVG+ E + G + G+ G W G ER +L LL+ NG+FLYGH+L LFALLSRLS+T FAI +GS PR VGM L+T+AV HFYR Y R + + S++ G + DGGE+G
Sbjct: 374 WGKGVSVVTVSAWQTLAALGVGFLMSR-----FWRRFRRPEVRALSDAERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAAFFCLLSLNV-GMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEISALFSGAKMTAGLQCLILLVVEVPRAAAGLSPRLLPHLWGVGVMEIDQQQPGGPV----VSGEGAGIGVGEAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAIS----------------RGSAAGPRIVGMSLATLAVSAHFYRAYV----RGRATSSLLNSGDNAEGLPCDADDGGEAG 705 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig315.8502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig315.8502.1 >prot_H-paniculata_contig315.8502.1 ID=prot_H-paniculata_contig315.8502.1|Name=mRNA_H-paniculata_contig315.8502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp MRGGVWGPGVSLITVSAWQSFVALCAGLVMSRAQRKSAWRRVAEARPLVDback to top mRNA from alignment at H-paniculata_contig315:5671..17059- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig315.8502.1 ID=mRNA_H-paniculata_contig315.8502.1|Name=mRNA_H-paniculata_contig315.8502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11389bp|location=Sequence derived from alignment at H-paniculata_contig315:5671..17059- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig315:5671..17059- >mRNA_H-paniculata_contig315.8502.1 ID=mRNA_H-paniculata_contig315.8502.1|Name=mRNA_H-paniculata_contig315.8502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig315:5671..17059- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |