mRNA_H-paniculata_contig31444.8493.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31444.8493.1
Unique NamemRNA_H-paniculata_contig31444.8493.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31444.8493.1 vs. uniprot
Match: A0A6H5K0N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0N2_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.600e-42
Identity = 78/121 (64.46%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:   73 VMFDNMQDQDDA--KDGEDDGG---LRGPTEFVLDDCPFGFGVMSLVKSMSVGELCQALLDPRHVPVPKADDGEFCHTVTLELVDVEELPPVWGSEEIRLKMSTRFKLEGNEKFAAGDYNR 420
            V+FDN+Q Q++A   +G+DDGG   L+GP  FVLDDCPFG GVM++VKSMS GE C A L+P+H PV   DDG F H V LELV+VEELPPV+ +EE+RL+MS+RFK+EGNEKF AGDY R
Sbjct:  273 VVFDNLQSQEEAPGSNGDDDGGSDGLKGPLSFVLDDCPFGPGVMAVVKSMSKGEKCDAWLNPKHGPVDDLDDGRFYHRVVLELVEVEELPPVFAAEEVRLEMSSRFKVEGNEKFIAGDYPR 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31444.8493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0N2_9PHAE3.600e-4264.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31444contigH-paniculata_contig31444:1133..2162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue8.2e-38
Seed eggNOG ortholog2880.D8LFT5
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG koko:K00281,ko:K09571
KEGG ReactionR01221,R03425
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,ko04915,map00260,map00630,map01100,map01110,map01130,map01200,map04915
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC1.4.4.2,5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Exons2
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.4012468-CDS-H-paniculata_contig31444:1132..12991622929969.4012468-CDS-H-paniculata_contig31444:1132..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31444 1133..1299 -
1691481091.3814983-CDS-H-paniculata_contig31444:1132..12991691481091.3814983-CDS-H-paniculata_contig31444:1132..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31444 1133..1299 -
1622929969.4161675-CDS-H-paniculata_contig31444:1906..21621622929969.4161675-CDS-H-paniculata_contig31444:1906..2162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31444 1907..2162 -
1691481091.3992093-CDS-H-paniculata_contig31444:1906..21621691481091.3992093-CDS-H-paniculata_contig31444:1906..2162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31444 1907..2162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31444.8493.1prot_H-paniculata_contig31444.8493.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31444 1133..2162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31444.8493.1

>prot_H-paniculata_contig31444.8493.1 ID=prot_H-paniculata_contig31444.8493.1|Name=mRNA_H-paniculata_contig31444.8493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
LSIRCRVSRIRETTAHDPEEPNEEVMFDNMQDQDDAKDGEDDGGLRGPTE
FVLDDCPFGFGVMSLVKSMSVGELCQALLDPRHVPVPKADDGEFCHTVTL
ELVDVEELPPVWGSEEIRLKMSTRFKLEGNEKFAAGDYNR*
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mRNA from alignment at H-paniculata_contig31444:1133..2162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31444.8493.1 ID=mRNA_H-paniculata_contig31444.8493.1|Name=mRNA_H-paniculata_contig31444.8493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1030bp|location=Sequence derived from alignment at H-paniculata_contig31444:1133..2162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCGATCAGGTGCCGCGTGAGTCGGATCCGTGAGACCACGGCGCACGA
CCCTGAAGAGCCGAATGAAGAAGTGATGTTTGACAACATGCAAGATCAGG
ATGATGCGAAAGATGGCGAAGATGACGGGGGTCTACGTGGACCGACGGAA
TTTGTGCTGGACGATTGCCCTTTTGGATTTGGCGTGATGAGCCTCGTTAA
GAGTATGAGCGTGGGTGAACTGTGTCAAGCTTTGCTGGATCCTCGCCATG
TGCCAGGTGGGGAAGTGATCGAAAGAGGGGTGCGTCATCCTACGGTAGGG
GAGGGAGGGGATTTGAGCCGCTTTGTTTAACAAGGAGCCGCTTTGAGAAG
GGGGTCAGAATGTCTTTCTTTGCACTTGTTGCCCATTTCAACTCGTGGAC
TCTGTACCTTTAGAGATGCACAGATACATACATTTGACATGGTTTTCATT
CGCGTTATTTTCGCGCCGCTTTCTTGCGAAGCGGCCTTCGTTAAACAATT
GACCCTCCCACCGTAGGATGGTTCAGATACGTGACAACAGCTTGGAATCT
CACTTGGCTGGTTCTGTGCTAACAAGTGAAATCTCCCGAAGGTTATCGAA
GCTGGCTGCGGTTACTGAGCGATTCTATTGCAAAAGCTCTTGCAGCCGTT
GTTACCATATAGTACAACATTTCATTCAAACACACACACAAACAGTCCCC
ATCCAACACTAGATACTGGGGTCTCCATATATCGACGATCGAGTGCCTCA
GGGCTACCTGATATATTTTGATAAACCAGCTGCCTCATAATCCATGCACA
GCCTCCTGCCGTACTCCATCCAGATTTGTACATATGCTCTTGTTGCGGAT
GTTTCTTCCGCAGTTCCGAAGGCGGATGATGGAGAGTTCTGCCATACTGT
AACACTGGAACTCGTAGATGTAGAAGAGCTACCGCCGGTGTGGGGCAGCG
AGGAAATCCGCCTCAAGATGTCGACGAGGTTCAAGCTTGAGGGTAACGAG
AAGTTCGCCGCTGGTGACTACAACAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig31444:1133..2162-

>mRNA_H-paniculata_contig31444.8493.1 ID=mRNA_H-paniculata_contig31444.8493.1|Name=mRNA_H-paniculata_contig31444.8493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig31444:1133..2162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCGATCAGGTGCCGCGTGAGTCGGATCCGTGAGACCACGGCGCACGA
CCCTGAAGAGCCGAATGAAGAAGTGATGTTTGACAACATGCAAGATCAGG
ATGATGCGAAAGATGGCGAAGATGACGGGGGTCTACGTGGACCGACGGAA
TTTGTGCTGGACGATTGCCCTTTTGGATTTGGCGTGATGAGCCTCGTTAA
GAGTATGAGCGTGGGTGAACTGTGTCAAGCTTTGCTGGATCCTCGCCATG
TGCCAGCTATCGATCAGGTGCCGCGTGAGTCGGATCCGTGAGACCACGGC
GCACGACCCTGAAGAGCCGAATGAAGAAGTGATGTTTGACAACATGCAAG
ATCAGGATGATGCGAAAGATGGCGAAGATGACGGGGGTCTACGTGGACCG
ACGGAATTTGTGCTGGACGATTGCCCTTTTGGATTTGGCGTGATGAGCCT
CGTTAAGAGTATGAGCGTGGGTGAACTGTGTCAAGCTTTGCTGGATCCTC
GCCATGTGCCAGTTCCGAAGGCGGATGATGGAGAGTTCTGCCATACTGTA
ACACTGGAACTCGTAGATGTAGAAGAGCTACCGCCGGTGTGGGGCAGCGA
GGAAATCCGCCTCAAGATGTCGACGAGGTTCAAGCTTGAGGGTAACGAGA
AGTTCGCCGCTGGTGACTACAACAGGTAATTCCGAAGGCGGATGATGGAG
AGTTCTGCCATACTGTAACACTGGAACTCGTAGATGTAGAAGAGCTACCG
CCGGTGTGGGGCAGCGAGGAAATCCGCCTCAAGATGTCGACGAGGTTCAA
GCTTGAGGGTAACGAGAAGTTCGCCGCTGGTGACTACAACAGGTAA
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