mRNA_H-paniculata_contig3144.8491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3144.8491.1
Unique NamemRNA_H-paniculata_contig3144.8491.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: D7FXL3_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXL3_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 1.430e-113
Identity = 156/205 (76.10%), Postives = 170/205 (82.93%), Query Frame = 2 
Query:   92 MSAVEDPEKGLDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYADWLKE 706
            MSAV +PE GLDA ERI IV E TNEV GSARRA+MR+DNLPHRA+YVFIQAPGGES  NPDLWVQKRTMIKDYCPG LDPSTGGVVGHGE+YEDN RRELEEEMG+K               RAEGE+R CFSFHYKD+ TNVWGDAWDCVWGGEIVPQPEEV+SVHR+SLS+LIAG D+ G  L+STPDGV+AL KY DWL E
Sbjct:    1 MSAVANPESGLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKAT-----GGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAE 200
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: A0A4D9CX45_9STRA (Nudix hydrolase domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX45_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.370e-45
Identity = 87/197 (44.16%), Postives = 115/197 (58.38%), Query Frame = 2 
Query:  122 LDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYADWLKEQG 712
            L A E + IVDE +N+V+   RR  MRK+ L HR++Y+F +   G+       +VQKRTM+KDYCPGY +   GGVVG GETY +N  RE EEE+GI P                  E    F+F Y+DER  V+GDAW+ VW G +  Q EEVESVH  +L ++    +      K TPD + A RKY D+L+E+G
Sbjct:    3 LSADEIVDIVDE-SNQVLRQERREIMRKERLLHRSTYIFARNSQGQ------YYVQKRTMLKDYCPGYYEVVAGGVVGAGETYAENADREAEEELGIPPS----------------AEKEHLFTFLYQDERIRVFGDAWEVVWDGALTLQKEEVESVHPMTLEEVFIRVEAGD---KFTPDSLYATRKYLDFLREKG 173
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: A0A3R7H0D8_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H0D8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 6.550e-43
Identity = 86/198 (43.43%), Postives = 114/198 (57.58%), Query Frame = 2 
Query:  122 LDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYADWLKEQGR 715
            L A E + IVDE  N V+G A RA MR  NLPHRASY+ I+   G+       +VQ+RTMIKDYCPG LDP TGGVV +GE  + N  RE EEEMG+K         N P        +R   SF+Y D+R+ VWG  +DC + G +V Q EEV+ V   +  +++A  D      + TPDG+ A  KY  +L+ + +
Sbjct:    3 LSAKEEVCIVDEENN-VIGKADRAVMRAFNLPHRASYIVIKNSRGK------YYVQRRTMIKDYCPGMLDPMTGGVVQYGEPMDVNAEREAEEEMGMK---------NVP--------LRYVTSFYYADKRSRVWGGMFDCTFDGPLVLQEEEVDEVLEMTADEVLARRD------EFTPDGIFAFEKYLKFLEAEAK 170
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: G4ZW50_PHYSP (Nudix hydrolase domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=G4ZW50_PHYSP)

HSP 1 Score: 150 bits (380), Expect = 2.620e-42
Identity = 84/198 (42.42%), Postives = 113/198 (57.07%), Query Frame = 2 
Query:  122 LDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYADWLKEQGR 715
            L A E + IVDE  N V+G A RA MR  NLPHRASY+ I+   G+       +VQ+RTMIKDYCPG LDP TGGVV  GE  + N  RE EEEMG+K         N P        +R   +F+Y D+R+ VWG  +DC + G +V Q EEV+ V   +  +++A         + TPDG+ A  KY  +++ +G+
Sbjct:    3 LSAKEEVCIVDEENN-VIGKADRAVMRAFNLPHRASYIVIKNSSGK------FYVQRRTMIKDYCPGMLDPMTGGVVQFGEPMDVNAEREAEEEMGVK---------NTP--------LRYLTTFYYGDDRSRVWGGLFDCTFDGPLVLQEEEVDEVLTMTADEILARRK------EFTPDGIFAFEKYLKFIEAEGK 170
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: A0A024US12_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US12_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.540e-42
Identity = 85/201 (42.29%), Postives = 114/201 (56.72%), Query Frame = 2 
Query:   95 SAVEDPEKGLDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYADW 697
            + +E     L A E++ IVD L N VVG A R+ MR   LPHRA+Y+ I+   G      D +VQ+RTMIKDYCPG+LDP  GGVV  GE+YEDN  RE EEEMG+         +  P        +    +F Y +  T VWG  ++CV+ G++  QPEEV  V   S +D++A  +      + TPDG+ A+R Y DW
Sbjct:    3 ATLEQKLNSLTAREQVAIVD-LDNNVVGKADRSVMRVFTLPHRATYIVIRNSAG------DFYVQRRTMIKDYCPGFLDPMAGGVVQAGESYEDNAIREAEEEMGV---------SGVP--------LTYVTTFLYNESYTVVWGGMFECVYDGQLKLQPEEVSEVLIMSAADIMARAN------EFTPDGIFAMRLYLDW 173
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: A0A067CR68_SAPPC (Nudix hydrolase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CR68_SAPPC)

HSP 1 Score: 150 bits (378), Expect = 6.870e-42
Identity = 86/201 (42.79%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:   89 QMSAVEDPE-KGLDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKY 688
            Q SA  D +  GL A E++ IVD+  N V+G A RA MR  NLPHRA+Y+ I+   G      D +VQ+RT+IKDYCPG+LDP  GGVV  GET+E+N  RE+ EEMGI          N P        +    +F YK+  +NVWG  ++C + GE+  QPEEV  V   S +++++ +D      + TPDG+ AL  Y
Sbjct:    3 QSSASMDNKLHGLTAKEQVAIVDD-NNNVIGKADRAVMRVFNLPHRATYIVIRNSSG------DFYVQRRTLIKDYCPGFLDPMAGGVVQFGETFEENAEREVAEEMGI---------TNTP--------LTYVTTFPYKNGDSNVWGGMFECTFDGELTLQPEEVSEVLVMSAAEILSRKD------EFTPDGIYALELY 173
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: A0A1V9Z936_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z936_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.880e-41
Identity = 82/198 (41.41%), Postives = 114/198 (57.58%), Query Frame = 2 
Query:   95 SAVEDPEKGLDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKY 688
            + +E+   GL A E++ IVD+  N V+G A RA MR  NLPHR++Y+ I+   G      D +VQ+RT+IKDYCPGYLDP  GGVV  GET+ +N  RE  EEMGI         +N P        +    +F YKD  +NVWG  ++C + G++  QPEEV  V   S ++++A +       + TPDG+ AL  Y
Sbjct:    3 ATMENKLHGLTASEQVAIVDD-NNNVIGKADRAVMRVFNLPHRSTYIVIRNSKG------DFYVQRRTLIKDYCPGYLDPMAGGVVQFGETFAENAEREAAEEMGI---------HNTP--------LTYVTTFQYKDGHSNVWGGMFECTYDGQLTLQPEEVSEVLVMSATEILARK------AEFTPDGIHALELY 170
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: W4HD80_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HD80_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.140e-41
Identity = 85/201 (42.29%), Postives = 116/201 (57.71%), Query Frame = 2 
Query:   92 MSAVEDPEKGLDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYAD 694
             +++E     L A E++ IVD L N VVG A R+ MR  +LPHRA+Y+ I+   G      D +VQ+RT+IKDYCPG+LDP  GGVV  GE+YEDN  RE++EEMG+         +  P        +    +F Y+D  T VWG  ++CV+ G +  QPEEV  V   S SD+IA  D      + TPDG+ A+R Y +
Sbjct:   12 QASLEQKLNSLTAREQVEIVD-LDNNVVGKADRSVMRVFSLPHRATYIVIRNSAG------DFYVQRRTLIKDYCPGFLDPMAGGVVQAGESYEDNALREVKEEMGV---------SGVP--------LTFVCTFFYQDASTVVWGGMFECVYDGALTLQPEEVSQVLVMSASDIIARAD------EFTPDGLFAMRLYLE 182
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: A0A6G0XF29_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XF29_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.100e-40
Identity = 86/205 (41.95%), Postives = 114/205 (55.61%), Query Frame = 2 
Query:   95 SAVEDPEKGLDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYADWLKEQ 709
            + +E     L A E++ IVD L N VVG A R+ MR   LPHRASY+ I+   G      D +VQ+RTMIKDYCPGYLDP  GGVV  GE+YEDN +RE EEEMG+            P        +    +F Y+  +T VWG  ++CV+ GE+  QPEEV  V   S  ++++         + TPDG+ A R Y +W  +Q
Sbjct:    3 ATLEQKLNSLTAKEQVEIVD-LNNNVVGKADRSVMRVFALPHRASYIVIRNSKG------DFYVQRRTMIKDYCPGYLDPMAGGVVQAGESYEDNAKREAEEEMGV---------TGVP--------LTYVTTFLYQ-AKTVVWGGMYECVYDGELTLQPEEVSEVLIMSADEILSRAS------EFTPDGIHAFRLYLEWKAKQ 176
[Close]
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Match: A0A0P1A6C5_PLAHL (Nudix hydrolase domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6C5_PLAHL)

HSP 1 Score: 145 bits (367), Expect = 2.360e-40
Identity = 80/189 (42.33%), Postives = 111/189 (58.73%), Query Frame = 2 
Query:  122 LDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFIQAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRELEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWDCVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKY 688
            L++ E++ IVD   N V+G A RA MR  NLPHRASYV I+   G+       +VQ+RTMIKDYCPG LDP  GGVV +GE+ E N +RE EEEMG+K         N P        +R   +F+Y+++ + VWG  +DC++ G +V Q EEV+ V   +  +++A         + TPDG+ A  KY
Sbjct:    3 LNSKEKVCIVDGQNN-VIGMADRAVMRAYNLPHRASYVVIKNTAGK------YYVQRRTMIKDYCPGMLDPMAGGVVQYGESMEVNAKREAEEEMGVK---------NTP--------LRHLTNFYYENDHSRVWGGLFDCIFDGPLVLQKEEVDEVFTLTADEILARRK------EFTPDGIFAFEKY 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3144.8491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL3_ECTSI1.430e-11376.10Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A4D9CX45_9STRA2.370e-4544.16Nudix hydrolase domain-containing protein n=4 Tax=... [more]
A0A3R7H0D8_9STRA6.550e-4343.43Nudix hydrolase domain-containing protein n=3 Tax=... [more]
G4ZW50_PHYSP2.620e-4242.42Nudix hydrolase domain-containing protein n=34 Tax... [more]
A0A024US12_9STRA3.540e-4242.29Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A067CR68_SAPPC6.870e-4242.79Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A1V9Z936_9STRA1.880e-4141.41Nudix hydrolase domain-containing protein n=1 Tax=... [more]
W4HD80_9STRA2.140e-4142.29Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6G0XF29_9STRA1.100e-4041.95Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A0P1A6C5_PLAHL2.360e-4042.33Nudix hydrolase domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3144contigH-paniculata_contig3144:2260..11298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.0
Seed ortholog evalue2e-88
Seed eggNOG ortholog2880.D7FXL3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydrolase
EggNOG OGs2ARP2@1,2RZMS@2759
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-28_002140.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size741
Cds size630
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.1778631-UTR-H-paniculata_contig3144:2259..22791622929969.1778631-UTR-H-paniculata_contig3144:2259..2279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3144 2260..2279 -
1691481091.2668228-UTR-H-paniculata_contig3144:2259..22791691481091.2668228-UTR-H-paniculata_contig3144:2259..2279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3144 2260..2279 -
1622929969.255166-UTR-H-paniculata_contig3144:6767..67881622929969.255166-UTR-H-paniculata_contig3144:6767..6788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3144 6768..6788 -
1691481091.3237484-UTR-H-paniculata_contig3144:6767..67881691481091.3237484-UTR-H-paniculata_contig3144:6767..6788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3144 6768..6788 -
1622929969.2748404-UTR-H-paniculata_contig3144:11228..112981622929969.2748404-UTR-H-paniculata_contig3144:11228..11298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3144 11229..11298 -
1691481091.3335662-UTR-H-paniculata_contig3144:11228..112981691481091.3335662-UTR-H-paniculata_contig3144:11228..11298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3144 11229..11298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.1973348-CDS-H-paniculata_contig3144:2279..24261622929969.1973348-CDS-H-paniculata_contig3144:2279..2426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 2280..2426 -
1691481091.2790022-CDS-H-paniculata_contig3144:2279..24261691481091.2790022-CDS-H-paniculata_contig3144:2279..2426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 2280..2426 -
1622929969.2106395-CDS-H-paniculata_contig3144:3936..41691622929969.2106395-CDS-H-paniculata_contig3144:3936..4169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 3937..4169 -
1691481091.2899044-CDS-H-paniculata_contig3144:3936..41691691481091.2899044-CDS-H-paniculata_contig3144:3936..4169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 3937..4169 -
1622929969.2243726-CDS-H-paniculata_contig3144:5683..58251622929969.2243726-CDS-H-paniculata_contig3144:5683..5825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 5684..5825 -
1691481091.3017163-CDS-H-paniculata_contig3144:5683..58251691481091.3017163-CDS-H-paniculata_contig3144:5683..5825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 5684..5825 -
1622929969.2399871-CDS-H-paniculata_contig3144:6659..67671622929969.2399871-CDS-H-paniculata_contig3144:6659..6767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 6660..6767 -
1691481091.3139212-CDS-H-paniculata_contig3144:6659..67671691481091.3139212-CDS-H-paniculata_contig3144:6659..6767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3144 6660..6767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3144.8491.1prot_H-paniculata_contig3144.8491.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3144 2280..6767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3144.8491.1

>prot_H-paniculata_contig3144.8491.1 ID=prot_H-paniculata_contig3144.8491.1|Name=mRNA_H-paniculata_contig3144.8491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MSAVEDPEKGLDAGERIVIVDELTNEVVGSARRADMRKDNLPHRASYVFI
QAPGGESATNPDLWVQKRTMIKDYCPGYLDPSTGGVVGHGETYEDNVRRE
LEEEMGIKPKQQQQGDNNAPDAARAEGEVRRCFSFHYKDERTNVWGDAWD
CVWGGEIVPQPEEVESVHRFSLSDLIAGEDRDGTVLKSTPDGVVALRKYA
DWLKEQGRA*
back to top

mRNA from alignment at H-paniculata_contig3144:2260..11298-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3144.8491.1 ID=mRNA_H-paniculata_contig3144.8491.1|Name=mRNA_H-paniculata_contig3144.8491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9039bp|location=Sequence derived from alignment at H-paniculata_contig3144:2260..11298- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTGCCCGACACGCATGCAGGACGTATCTGGCAATTGGAGTTGAAGTC
AATTTATTTGAGGTTCAAAGGTAAGAACTTGTTTCCGTGAGATGGACGTT
GCAGTGAGGTGCCATAGGAAGAAGTCTGCCCCCAGTATTCATACGGTTCA
AAACAGGTAGTCACGTGTATTCCGTTCACAACGACCACTTGTACACGATG
GGCGATGGAGCAAAGCGTGCAGTGTGTGTAGGCACCAGATAAAGGTGAGG
TTTGTATTGCCCCAGCAATGCATTGCATCACTAGAGCAGTACTTCTGTCC
GACCCGCAGCTGTTTCTGTCTAATTTTTCCCAACCCGTAAGCTCGTGGCA
ACGCCCACATATTTGGAGACGCCTGTATATGTCCTTCACACATGTCCAGC
AACTTCAACTTTGTTGTTACGTACTGGTTTCGTAATGATGAGTAGGATCT
TCTAAAGAATATCTATTTTAAGGATCGATTTGTTGTGAAACCCTTGTACT
AGACCTCTATTTGGTAGGACTATGCATCAGGTGTTCAAAACGATATTCAA
ATATGGGTCGGCGAAGCCGAGCGAAGCCGAGCGAAGCCGAGCGAAGCCGA
ATGATACTGACATATTATCGACATATAACCGATACATTGTCGATCCATTG
CCGATCCATTGCCGATAGACCGATATATCAGCGGTATATCGGTTATATAT
CGGTGCGAGCGGAGTGAGCCAGCCCCGCGAGGCGAGCACTTGGGCGTGGG
TCAAACCGACCGCCCCCGGCTGGTGACGGGTGTTTAATAGATATGAAAAT
ACTAAGCAGATGATTGATTATTCCGTGATGACGGTTATATGGTGTCAATC
TTGGAACGGCCTGGGAAGGTTCTTTTGGTTAGTGGTGACGTGTAAATTGT
GCGCATGAAGATCCATTTGTAGTTACAGGATGGAGGCCTTGCTTATATAA
TTCGCTTCCGACATGATATTGGTGAAATGGAGAACGAACTTTGTTTTGGA
GAACGAGCCTGAAGTCCGTTCTTTTTTCACGCGACACGTTCTAGCGCGCT
CATTTCGACGAGTAAGACTGCTTGCAGCGGCTCAAACAAATGACTTTGCT
CATAGCAGCACGCAGATACTTGCTGTACAGCCACCGGTAGTCTCGGTGGC
GAGTTACACCAGAGTGAAAGACCTGTCTGGGCTGCTGCAAGCAAGAGCAT
CGATTAAAAAATCCGCCCCGAATGGATTAATCAGTTTCCGGCCATTCTTG
TCACTGCCATAAATTCCGAACCAAGGATCGGATTCAGTGAGTTGAGGTAT
TGCCGTCATCGGGTGACTGAGAGCTTTTAATTGAGGTATCAACCAACCGA
ATCGGCCATGTTGGTCAGAAAGTACACCAGGCGGAAAAATCAGTGGCATG
GTCAAAAGGATATTAAGCTCGTTCTCCGAAAAACGTTCGTTCTCCATTTC
ATCAATATCATGTTCTATTTAGAGTTTATATTTTTCTTGATCATAACCGA
AACGCAAACCTTGATCCGGGAGGAAGGATATGAGAAGACTTCTTCAAAGC
CTGCTGCTGTTAAGACATACTTTACACTCTGCAACAAAAGAGGTACATAT
ATGCACTGCAAGATAGGTCAATCGAGCGAGCGACATGTGAATGATTCGAA
TGAGCTTCAAGATTAACACTAATTCCGCGTAGTTAGTCAGCGGTTAATTA
TTCTTAAGCTTACAAATCTGCGCGAGTGAAGTAAATGTTCATATTAAGAT
ACGGTCCCACTTAAGATACACTTGTGTTCAATCGTCCATAACGCGGCGAA
AAATCGTTAATTTTCCATTGTGAGTTTTTTTAATTTGTGCACATTGGCAA
GACGCTTCGTTTAAGGTATTCAGCATATCAATCGGCTGAGTGTGCGTCAT
CCCACAGCACCGCATGCAAGCCCCTATCTGTCTTGCTCCAACCTCAGTCT
GCGGTCGATGGGCTGCTAAGCGTGCAGAGAGTCAGGGTGGACCCAGAATG
TGCAACAGCAGGCCATGGAAGCGGTAGGCAGCGGTCACGTGTCCTACCGT
GTTGGTGCAGACACCATTGGTATCTCCGTTGGTTCACTGCAGAAGCGTGT
CGGCGGTAGTGTAGGCATAGTTGACAGGGTTGACCTGGGTACCGTACTGT
CGACAGAGGAAGAAAACTATCTCGAAGATGCGTTGAAATTTTCTGCAGCT
CGACACCAACCCTGAATGGAGATGACCCGAAAGAGGCGGTTATGGCACTC
TGCAGCGACAACCGACCAGTTCCATGGGACCTGGCAGTAAGCCTGCGCCG
AAAATGGCTCGACTTGTTCTTCAAGAAGCACCCGCGGCTAGCGGAGCGTA
GCAGCCGCATCTATGAGGCCGATAGAATGACGGATGTTCAAGAAGCCCGC
ATGAGAGATTTGTATTCGGCCTGGGAGGCGTACACGGCCAAGGAGAACCC
GGCAACCGACCACATATGGAACACCTACGAGACAGGTGCTTTATAGTCTG
TTAGAACCATTGCACTGACGTGATTTGATGCATATTTCTAGAACTAACTC
CAGAAAAGGAGGTGTTGGTGTCAGTGGTGGGGTCTTGTTGGGTGTTTTGT
CGTCTTTTTTCTCGCGCTGCATTATCCGCTCTGCCTTCCATACTGCTGTC
TGGACGTGCTATGTTGCCTGTACTTACTGTCTGTAGAGGTATTGCCTGTA
CTGTCCTGTACCACCCGATACTCGACTTGATATTCGGTGCCGTCCGTCTC
CCCAACATCTCACGCGTGAATATCCTCACCGCTGGTGTTACTCCACAAGA
AACTAAGGCTAAGAAGGTGATCGCCGAGAAGGACCATAAGGTCGTCGGAA
TGAAGCGTTCCAACTCCCACGCAAGCGTTATGGTCGTCGCCACAATCATT
GCGGCGGGCGAGGTGACTCCGCCGCTGCTATTTTTTAGAGGGCAACGAAT
GAAGGCGGCGTGGGTTCAGCGCGGAGGCCCACCGGGTGCGTTGTACGCTG
CAACCGATTCGTCGTTCATGCAGGGACCAGTATTCCTGAGTTACATCAAG
GCTTTCCACAAGCACTGCGTGGACACCGGGGAGGATGACGCGAAGCCGCA
CGTGCTCGTGCTCGATGGGCACGCCTCCCACCTCACCTTCAAGATTAACC
AAGCAGGCAGCACGGGAGGCTGCCGCAGCCGCGACAGGCTGTGGGCAGGG
ACGGGGCAGGGGTCGTGGTGATGCACCGGTGAGTGCCCGAGGAGCGGGGC
GTTATGTGTCTGGGGGAGGAGGCGGGCGTGGGGTGCCTACAAGAGGAGGT
GGGCGCGGGGTGCGGGCAGGAAGAGGTGGGGGGCCTGCAAGAGGAGGTCA
GCGTGGGGTGTTTGGAGGAGGAGGTGGGCGCGGGGTGCCTGCGAGAGGAG
ATGGACATGGGGTGGCCACCTCAGGATGTGGAAGGGTAGTGCTGGCTGTA
CTAGTTAGCCGCGGTGCAATTGCCAGAGAAGGTGGGCGTAAGACGTCGTC
CACAAGAGGAGGTAGCCCTGCGGATGGGGCAAATGCGAGAGTACGTGGGC
ATGTAGGGGGGTGAGAGGCGTCCGCTACAGTACGCGGGCGTAGGGCTTCT
TATTGCTCCAGTGGGTGGGTCAGTTACGGGAGTACATGGCCGGGTGAATT
AGCGAGTGCCTGAGGCTAACCTGGCCTCGCCACCTTCGAAACGCACCTGT
GGAGCGACTGCTGCTGCATCATCTAGATGCGAGATGCGCAGCTCTGACAG
AACAGATAGAACATATGTTAAGTGGTATACTTGCTGCGTGTGTACTGAGC
TAAAATATATATACCAGACCACAGCCGACTCTCAAGGCCGGCTACTCAAA
TTAGTAGTATTTGACCACATCGATCGGTGTAACATTATTTAATTGTCATT
ACGGCACTTCAATTTTATCCCTCACATTTCACTGATTACGATGTACTCTG
GGCCATGAATATAGATACACTTAGTGAAAAAAAAGTTATTTGTTTTGTCC
CCGGTCCCCGGCGATGGGGGAGTCGGCGTTTGGCGGGCGAGGATTACAAC
TGTGGTACAGTTAACAGCAGTAAATTTAATCCAGTACAGATTGACTGTTT
ATAGCATAGTTTACGTATATTGCGGGTAGAAGAACATGGGAAACTTCAAT
CGTCAATTTGCCGCCCGACATGGAAACAATAATAGAATCAGTAGGGAGCG
GAGGGGAAACGATTCTCTGGAAATAAAAAAAACAACCAACAGTGACGGAG
AGGGAAACACGGCACGGAAGGCTTTCTTGAATGCAGCGAAACGTGAATAA
AGGCGTAGGCCACGAGGAAAGATCCCAGGTCCGCCCAAGACCCCGCTTGT
TCGGGTGCTAGCCATGGGAAGAATGCTGCACGCACGGCGACCCGATGCTG
CATGCACGGCGATCCTCAGCGTAGATATCATGACGATTATACTTATATAT
ATATATATATATATAACGAGAGAGAGAGAGAAGTCAACTAATCTTTTTTC
GTTTCATCAGACGCGTGCAACATCATAACAGATGTCTGCGGTCGAAGATC
CCGAGAAGGGCTTGGATGCGGGGGAGCGGATAGTCATCGTGGATGAGCTT
ACGAACGAAGTGGTGGGGTCAGCTCGTAGAGCGGATATGGTGAGGCGAGG
CCAGTTTGTACCACTTTGTCAAATGCGATGGTTGACTGTCCTTTGTTTTG
TGGTTGACGCTTTGTTGTGCAACGACGCGAGCTTAACTAAGCGACGCCGG
GACAACCGTTGCCCCTAACCCTACAGGCCTAGTGTGTGTTGGCAGAGCGC
AAATCGGCGTCGTTGGCGCCATTTGTGAGCACGACAGGTTTTGGGCACGC
GATCGCGTTGTGGGCCCTCCAGGGCGTGATGTCGGCGTGACGTCACCTCC
CATCATCGTATGCTGAGTATGTATACCTCGACCATTGCACTTGACAAACG
TGGTACTCCGTGTGGCAGCTTTCCCAAAGATTTTTGCGGTGATATGGCGA
ATTTAAACACACCAAATCAATACAAGATCAAAAGGAGAATTAACGCAGAA
ATACGTTCAATATCCTATAGGAAATAATGTCGAAAATCGTCTATATGAAG
GACATGTTTGTTTTGCTAGTACAACTCAGAAAATAGTTACAGTCGGCTAG
GTGTTGCATAGCATCCACACACACACACACGCATATATATATCGATGTGT
AAATCAAATACAGCGTGTTGTTTTTTAAGGTATAGAACTTTTAGTGAACG
CAGTATGAAAAAGATAAAATGTAACACATGGAGTTTTTGTCCAGACTCAG
AAAAATACATGTGATGCTTCGTCATTTCACGCGCCGCTCACTACACATGC
GCTACATATTTATCATCTAATCAAGCACTACTAACACACGAAAACAATCC
GTTCTTTGGCTATATGCACTGATTATGATTCCGCCGCCCGCATGTATACT
GCTGCTGCTGCTGCTTCTTGCAGAGAAAAGACAACCTACCGCATCGCGCG
TCGTACGTTTTCATTCAAGCTCCCGGGGGGGAGAGTGCTACAAATCCGGA
CCTATGGGTGCAAAAGCGTACGATGATCAAGGATTATTGCCCAGGCTACT
TGGACCCTAGCACTGGTGAGCTAATAGCTGTAAAATTCTCCAAGCACTTC
ATATGAAGGTCCGCCAAGGTTTATCGAGGTCGTCGCGGATTTGGACCATG
ATTTATGACAGCGCGAGGATACTTGACATGAGGGACCCTCCAGATTATAG
AAGATCCTTCTCACACCTTCGTGGAGCGTCCGATTTTGGAGTACGAGCAC
ACGAACCACTCCCCACGCTTTTCCCCCACAGTTTTGTAAGCATGAAGATT
GACTAACTGTTCAAGGTTTTATGAAGAATTTTTTCTTTTATTTATCACTA
AATCTTCATCTTTACCCGAGCTGTGGAATGTTTTTAGTCATACCCCACAT
GTACGTGCCGTGCCTCCTTCCGAGGAAGTGGTGTGCCTTTTTCCATTCAT
TTTTTCCTGTTCCTGGTCGTACGATAGCGGCTACACCCCTTTTCTAGGAA
CGACAACGGGACACCGGACCTTCGCAATATGGGTCGGAATTATCGTTCCT
TCCTTTTCCGTCGTTTGTTTTAGGTTGCGACCTGGTTCCATCCCATCCCG
TCCCGTCCCGTCCCGTCCCGTCCCGACCCGACCCGACCCGACCCGACCCG
AACTTTTCTTGAAGGACTGGACCGATTCCCGTTCCACGACATCCCATCCT
GACAGAGCACGAATGCCCCTTGTCCCATCCCGTGGTCTCGTGAAGACCCT
TGCTTCTTTCCACACAAGAGACCCTCGTTGGGGATTGAGAATTATTGTTG
TAAAAAGCAGGCAAAAGTGACTCCACGAAGGTACCAGGTACTAGGTACCA
GGTACCAGGAGAAGGAAAACAGAACAGATAGCGGGGTAAAAAACGCGCTA
TATTCGGTTGTCCACTCTCAAGAGAGTGTCATGCTCCAAATGTGTTGTTT
TTGCTCCCAATGTCGTGGGACAACTGATTTTGCTCTCTAGCCGTTGTTGG
GTCTCGGTGCGATGGGGAAATTTCATGTTTTTGTTTGTGTATTGAAGAGA
TTCAGAATCCACCAAAAGAGAAACAGATAATATTATGAGTGTGACGTATA
CATGTACAGTAATTGGAGTGTTTATGGATGTATATATTTTTCCGTTGAAA
AAGGTCCACCATTTGTTGATATATCATACGTTGAAAACAAAAAAGAACGT
TCGTGATAAACTGCCGTGTTTTTAATGAATGAGGCACTTTTTTTAATATC
CAAAAATGGGATGCAGGACATGGCAAGATGTGATGTGGTGCGAAACCACT
TGGGCTGATACAACAATAAAAATGTATTCGGAGAAACCATGATTACCACG
ACGGTCGCCATCGTCACCATCATCATTATCACCATCACCACCAATCACAA
AACTCACTTACACATGAATCATGCAAAGCACAATTAAAAGGACCATCACT
CCACCTTAACCAACAGCTACTTCCCACCCCAACATGTATTTCTCTCTCTC
TCTCTCTCTCGGTATATATTAAAACGTAACTCCACGAACACCACGCCGCC
GCCCTCTCCACCGACAACCACCACGGCAGGGGGGGTAGTTGGCCATGGGG
AAACCTACGAAGATAATGTCAGGAGAGAGCTAGAGGAAGAAATGGGCATC
AAGCCAAAGCAGCAGCAGCAAGGAGACAACAACGCCCCCGACGCTGCGAG
AGCTGAAGGAGAGGTCCGTCGATGCTTCTCGTTCCACTACAAGGACGAGC
GGACGAACGTGTGGGGGGATGCGTGGGACTGTGTTTGGGGCGGGGAGATT
GTTCCGCAACCGGTGAGCTCGTCAGTGAATTGATCGGTCAGACAGTCAGT
CAGTTGGGTAGGTGGGTAGCGGGGTCGGTCACTTTTGGAGAATAACACTC
TCCTCCTCTTGAGCGTGGCGATGTCTTAACCCGTTCGGGACGCTGTACTT
TGAAGCATCGTCCAAGACTCACATCCAACTGACTGCCGGGGCCAACAAGT
ACCTTTACAAATTTATATAAATATGTTTTCACCTATTGTATAGCAGTTGG
CCCGACTGGCGCACAAAGCAAAAACAAAATTAAGCTGGCCAGGGCACTTG
TTCAAAACAAAGTACATCTGCGAGTTTCGCCGAGTATTTGTTAGTAGATG
AATGATTTGACCTACTTCGACACCCGGTACTTACAAACGCATGAATATCA
CTTGACTTGCATTTGTCCAGGGTGTGCAATAATTTTCATCATTGTTTTTT
TGTTGATATTAACTAAATACGTAGGGGTACCAAGATTTGAAAAAACACCA
AAAAAATGATTTTATAAAGATGAATATTATATTATATTATGGACTTTCGT
TTTCGATTGAGGTTTTGCTACAAATGGTTACAATGCCTGTATAACAGCCT
AGGTCCTAGCTAGTTGCACGCAGTACTACAGCTCTCACCGGTGTGAACAT
ACGGCTAAGGGGAAACTATTGGGTCAAGTGATGCTGCTTTTTTCGTGTCC
ATTGGCCCCCCTGAAAATTTGTCCTCGTACTGCAGGCCGACTCTAACACA
TGGTGTATCGGCGTGGTGTGATCTACGTAAGCATTGCGGCAACGCAAGTA
TCTTGAAATTACACAATTTTGTTGGTCCTTTTTATGGGCCAAGCAGTCGA
AAATATTGTTGTACAGAGGAAAAGAAAAAAGACACGAACATCATTCAGTC
AAGTAAAAGCTCTGATGCAAAATCAGATTTGCCAACTTAACGTTCCAGAT
GTTGTCATCATTCATGCGATCGTTTTTTCCAACAATGTAAAACAAGCAAT
TCGTTGTTTGTGTCGTTTTTGCGTGCACTTACTATTTGTGTTCGACTAGA
GCTAAATATATATATATATATATATCACCTTGGGAAACACCTTGAAAGGG
GTAATAATCACCCAACGTCTGTCGAGGACAGTTACCCTCATTTTCAAATA
CATATATTTATATACTGTATGTATGTGTATATGATGAGACCCCTAGGAGA
ATCAATTCATCATTGTCGTGGCCAGGTAAGGCTTCTAAGTGAGGGCTATG
CTGCATCGTCGTTCACAGTCCTCATCTGGCACAACATAAACCAATCCCCT
GTTCAAGTAGAATATATGTCTACCCTTGGCCGTAAGCCTCTCATCGCCAT
CACATCTATGCAAGAAACAATATCGTAAGTGGAGAAAAATCAGAAATCAG
AAAACGATCGGCCGAGATACGCTTCCCCTTCCTGCGTGCTTCTCCCTTCT
TCCTCGCCTCCTTGCTGGAAAGCCCTGCGTCTTTGACCTAACATCTCCAC
TCGTTTTGTTTCGGAACAACAGGAGGAAGTGGAGAGTGTTCATCGTTTCT
CGCTCTCAGACTTGATCGCTGGGGAGGATCGAGATGGAACCGTCCTCAAA
TCCACCCCCGATGGAGTCGTCGCGCTTCGAAAGTATGCCGACTGGCTGAA
AGAACAAGGCCGGGCTTAATCACGTAGGGTGAGGGGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3144:2260..11298-

>mRNA_H-paniculata_contig3144.8491.1 ID=mRNA_H-paniculata_contig3144.8491.1|Name=mRNA_H-paniculata_contig3144.8491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig3144:2260..11298- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGCGGTCGAAGATCCCGAGAAGGGCTTGGATGCGGGGGAGCGGAT
AGTCATCGTGGATGAGCTTACGAACGAAGTGGTGGGGTCAGCTCGTAGAG
CGGATATGATGTCTGCGGTCGAAGATCCCGAGAAGGGCTTGGATGCGGGG
GAGCGGATAGTCATCGTGGATGAGCTTACGAACGAAGTGGTGGGGTCAGC
TCGTAGAGCGGATATGAGAAAAGACAACCTACCGCATCGCGCGTCGTACG
TTTTCATTCAAGCTCCCGGGGGGGAGAGTGCTACAAATCCGGACCTATGG
GTGCAAAAGCGTACGATGATCAAGGATTATTGCCCAGGCTACTTGGACCC
TAGCACTGAGAAAAGACAACCTACCGCATCGCGCGTCGTACGTTTTCATT
CAAGCTCCCGGGGGGGAGAGTGCTACAAATCCGGACCTATGGGTGCAAAA
GCGTACGATGATCAAGGATTATTGCCCAGGCTACTTGGACCCTAGCACTG
GGGGGGTAGTTGGCCATGGGGAAACCTACGAAGATAATGTCAGGAGAGAG
CTAGAGGAAGAAATGGGCATCAAGCCAAAGCAGCAGCAGCAAGGAGACAA
CAACGCCCCCGACGCTGCGAGAGCTGAAGGAGAGGTCCGTCGATGCTTCT
CGTTCCACTACAAGGACGAGCGGACGAACGTGTGGGGGGATGCGTGGGAC
TGTGTTTGGGGCGGGGAGATTGTTCCGCAACCGGGGGGGTAGTTGGCCAT
GGGGAAACCTACGAAGATAATGTCAGGAGAGAGCTAGAGGAAGAAATGGG
CATCAAGCCAAAGCAGCAGCAGCAAGGAGACAACAACGCCCCCGACGCTG
CGAGAGCTGAAGGAGAGGTCCGTCGATGCTTCTCGTTCCACTACAAGGAC
GAGCGGACGAACGTGTGGGGGGATGCGTGGGACTGTGTTTGGGGCGGGGA
GATTGTTCCGCAACCGGAGGAAGTGGAGAGTGTTCATCGTTTCTCGCTCT
CAGACTTGATCGCTGGGGAGGATCGAGATGGAACCGTCCTCAAATCCACC
CCCGATGGAGTCGTCGCGCTTCGAAAGTATGCCGACTGGCTGAAAGAACA
AGGCCGGGCTTAAGAGGAAGTGGAGAGTGTTCATCGTTTCTCGCTCTCAG
ACTTGATCGCTGGGGAGGATCGAGATGGAACCGTCCTCAAATCCACCCCC
GATGGAGTCGTCGCGCTTCGAAAGTATGCCGACTGGCTGAAAGAACAAGG
CCGGGCTTAA
back to top