mRNA_H-paniculata_contig3143.8489.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3143.8489.1
Unique NamemRNA_H-paniculata_contig3143.8489.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3143.8489.1 vs. uniprot
Match: D7FW95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW95_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.550e-33
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:   13 QAQKDLTLAAANGHTLEVVRAIELGADVDSVVNTYTSLMRAANWGHVDTVAELITEGADMFATDKRGRTALDWARIACRDNVAQILE 273
            QA KDLTLAAA G T +VVR+IELG DVD+ +NT+T LMRAA WGHVDT+A LI EGADMFATD++GRTALDW+RIA RD  A+ILE
Sbjct:   43 QACKDLTLAAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWGHVDTLATLIAEGADMFATDRQGRTALDWSRIARRDKAARILE 129
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BLAST of mRNA_H-paniculata_contig3143.8489.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.940e-32
Identity = 62/87 (71.26%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:   13 QAQKDLTLAAANGHTLEVVRAIELGADVDSVVNTYTSLMRAANWGHVDTVAELITEGADMFATDKRGRTALDWARIACRDNVAQILE 273
            +A KDLTLAAA G T +VVR+IELG DVD+ +NT+T LMRAA WGHVDT+A LI EGADMF TD++GRTALDW+RIA RD  A+ILE
Sbjct:   12 RACKDLTLAAAAGKTSDVVRSIELGGDVDTTLNTFTPLMRAATWGHVDTLATLIAEGADMFTTDRQGRTALDWSRIARRDKAARILE 98
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BLAST of mRNA_H-paniculata_contig3143.8489.1 vs. uniprot
Match: A0A5A8CKZ0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKZ0_CAFRO)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-8
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    1 MTRNQAQKDLTLAAANGHTLEVVRAIELGADVD-SVVNTYTSLMRAANWGHVDTVAELITEGADMFATDKRGRTALDWAR 237
            M+ +   K L  AA  G+T EV R ++ GA V+ S V   T LMRAA +GHV+++  L+  GAD+ A DK G++A+D ++
Sbjct:    6 MSDDAMGKALWDAAEAGNTGEVTRLLKAGAPVNWSNVYRQTPLMRAATFGHVESIQVLLDRGADLEAKDKAGKSAIDLSK 85
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BLAST of mRNA_H-paniculata_contig3143.8489.1 vs. uniprot
Match: A0A7S3JXM0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXM0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.630e-7
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:    7 RNQAQKDLTLAAANGHTLEVVRAIELGADVDSVVNTYTS-LMRAANWGHVDTVAELITEGADMFATDKRGRTALDWARIACRDN 255
            R+     L  A++ G    + + +E GAD +  +   TS LMRAA +G  ++V  L+  GAD+FAT+  GR+ALD A ++ R N
Sbjct:  396 RHDGGTALLAASSFGRCFAIQQLLERGADPNLHLRDLTSPLMRAAQYGFYESVVLLLQNGADLFATNAAGRSALDLAVLSARSN 479
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BLAST of mRNA_H-paniculata_contig3143.8489.1 vs. uniprot
Match: UPI000406D61B (ankyrin repeat domain-containing protein n=1 Tax=Aquimarina muelleri TaxID=279356 RepID=UPI000406D61B)

HSP 1 Score: 50.1 bits (118), Expect = 1.150e-5
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:   34 LAAANGHTLEVVRAIELGADVDSVVNTYTSLMRAANWGHVDTVAELITEGADMFATDKRGRTALDWARIACRDNVAQIL 270
            ++ A G    V + +ELG +V+      T LM AA +  V+ +  L+  GA +   DK+G TAL +A+++  DN   +L
Sbjct:   43 ISIAKGDYEMVKKMVELGTEVNKTSKGMTPLMYAARYNRVEIIKLLVANGAKINVKDKKGFTALKYAKLSGADNAQTLL 121
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BLAST of mRNA_H-paniculata_contig3143.8489.1 vs. uniprot
Match: UPI001F204A08 (ankyrin repeat domain-containing protein n=1 Tax=Hydrogenophaga sp. SL48 TaxID=2806347 RepID=UPI001F204A08)

HSP 1 Score: 50.8 bits (120), Expect = 1.690e-5
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  109 NTYTSLMRAANWGHVDTVAELITEGADMFATDKRGRTALDWARIACRDNVAQIL 270
            N  T LM AA++GH D V  L+ EGAD    +++G TA+D+AR A RD++A+++
Sbjct:  142 NKSTPLMLAAHYGHADVVRLLLEEGADPTLRNEQGLTAVDFARRAGRDDMAELV 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3143.8489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FW95_ECTSI3.550e-3373.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2H6_9PHAE4.940e-3271.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5A8CKZ0_CAFRO1.890e-842.50Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S3JXM0_9STRA6.630e-738.10Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI000406D61B1.150e-532.91ankyrin repeat domain-containing protein n=1 Tax=A... [more]
UPI001F204A081.690e-546.30ankyrin repeat domain-containing protein n=1 Tax=H... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3143contigH-paniculata_contig3143:8457..8729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.95443-CDS-H-paniculata_contig3143:8456..87291622929968.95443-CDS-H-paniculata_contig3143:8456..8729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3143 8457..8729 -
1691481091.1629472-CDS-H-paniculata_contig3143:8456..87291691481091.1629472-CDS-H-paniculata_contig3143:8456..8729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3143 8457..8729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3143.8489.1prot_H-paniculata_contig3143.8489.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3143 8457..8729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3143.8489.1

>prot_H-paniculata_contig3143.8489.1 ID=prot_H-paniculata_contig3143.8489.1|Name=mRNA_H-paniculata_contig3143.8489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MTRNQAQKDLTLAAANGHTLEVVRAIELGADVDSVVNTYTSLMRAANWGH
VDTVAELITEGADMFATDKRGRTALDWARIACRDNVAQILE
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mRNA from alignment at H-paniculata_contig3143:8457..8729-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3143.8489.1 ID=mRNA_H-paniculata_contig3143.8489.1|Name=mRNA_H-paniculata_contig3143.8489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig3143:8457..8729- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCGTAATCAGGCGCAGAAGGACCTAACACTGGCCGCAGCTAACGG
TCACACGCTGGAAGTTGTTCGCGCGATAGAATTGGGAGCAGATGTAGACT
CGGTCGTAAACACCTATACCTCGCTCATGCGTGCGGCCAATTGGGGTCAT
GTAGACACCGTAGCGGAACTGATAACTGAAGGAGCAGACATGTTTGCGAC
GGATAAGCGAGGGCGCACCGCTCTAGACTGGGCGCGAATCGCCTGCCGAG
ATAACGTAGCGCAGATATTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3143:8457..8729-

>mRNA_H-paniculata_contig3143.8489.1 ID=mRNA_H-paniculata_contig3143.8489.1|Name=mRNA_H-paniculata_contig3143.8489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig3143:8457..8729- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCGTAATCAGGCGCAGAAGGACCTAACACTGGCCGCAGCTAACGG
TCACACGCTGGAAGTTGTTCGCGCGATAGAATTGGGAGCAGATGTAGACT
CGGTCGTAAACACCTATACCTCGCTCATGCGTGCGGCCAATTGGGGTCAT
GTAGACACCGTAGCGGAACTGATAACTGAAGGAGCAGACATGTTTGCGAC
GGATAAGCGAGGGCGCACCGCTCTAGACTGGGCGCGAATCGCCTGCCGAG
ATAACGTAGCGCAGATATTGGAGATGACGCGTAATCAGGCGCAGAAGGAC
CTAACACTGGCCGCAGCTAACGGTCACACGCTGGAAGTTGTTCGCGCGAT
AGAATTGGGAGCAGATGTAGACTCGGTCGTAAACACCTATACCTCGCTCA
TGCGTGCGGCCAATTGGGGTCATGTAGACACCGTAGCGGAACTGATAACT
GAAGGAGCAGACATGTTTGCGACGGATAAGCGAGGGCGCACCGCTCTAGA
CTGGGCGCGAATCGCCTGCCGAGATAACGTAGCGCAGATATTGGAG
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