mRNA_H-paniculata_contig31389.8477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31389.8477.1
Unique NamemRNA_H-paniculata_contig31389.8477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: D8LRW9_ECTSI (Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW9_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.650e-52
Identity = 78/91 (85.71%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    1 GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIVAE 273
            GNTGATIEGPCMFDPASFFGHSEFEL+IMEMFGGF++PFW AYH K+PKA+GFERRQ+LYKLYHYLNQLNLFGDPKVRETVETLT+E++++
Sbjct:  259 GNTGATIEGPCMFDPASFFGHSEFELAIMEMFGGFQEPFWTAYHDKIPKAEGFERRQKLYKLYHYLNQLNLFGDPKVRETVETLTNEMLSD 349
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A6H5JFY5_9PHAE (Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY5_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.220e-51
Identity = 79/91 (86.81%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    1 GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIVAE 273
            GNTGATIEGPCMFDPASFFGHSEFEL+IMEMFGGF++PFW AYH K+PKA+GFERRQ+LYKLYHYLNQLNLFGDPKVRETVETLT+EI+++
Sbjct:  375 GNTGATIEGPCMFDPASFFGHSEFELAIMEMFGGFQEPFWTAYHDKIPKAEGFERRQKLYKLYHYLNQLNLFGDPKVRETVETLTNEILSD 465
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A835Z3B4_9STRA (Protein-ribulosamine 3-kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.900e-36
Identity = 59/89 (66.29%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIV 267
            GN G T EGPC FDPASFFGHSEF+LSIM++F G+   FW AYH K+P+A+GF  RQR+Y+LYHYLNQLNLFGD  V  TV+ LT +I+
Sbjct:  257 GNAGGTPEGPCCFDPASFFGHSEFDLSIMDLFAGYTDAFWAAYHAKIPRAEGFRERQRVYQLYHYLNQLNLFGDSNVALTVQRLTADIL 345
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A7S0VP00_9CRYP (Protein-ribulosamine 3-kinase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VP00_9CRYP)

HSP 1 Score: 110 bits (275), Expect = 3.940e-29
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 GNTGATIEGP-CMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVR 234
            GN GAT +   C+FDPA FFGHSEF+L+I  MFGG+   F+++YH  +P+A+GF++R+ LY+LYHY+NQLNLFGDP VR
Sbjct:   53 GNAGATGDSEACVFDPACFFGHSEFDLAITGMFGGYTDAFYESYHAAIPRAEGFQQREGLYRLYHYVNQLNLFGDPAVR 131
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A7S0N4H8_9CRYP (Protein-ribulosamine 3-kinase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N4H8_9CRYP)

HSP 1 Score: 107 bits (268), Expect = 1.990e-28
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 GNTGATI---EGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIVAE 273
            GNTGAT    EGP +FDP+  FGHSE +L++ ++FGGF   F DAYH  +PKA GFE R R+Y LYHYLNQLNLFGDP V      L   I+ +
Sbjct:   12 GNTGATPPPEEGPVVFDPSCVFGHSELDLALGDLFGGFSPAFHDAYHAVLPKAAGFEERGRVYALYHYLNQLNLFGDPHVAAKCAELMRTILGD 105
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A7S2ZNV6_9RHOD (Protein-ribulosamine 3-kinase n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNV6_9RHOD)

HSP 1 Score: 112 bits (281), Expect = 1.010e-27
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIV 267
            GN G T +   ++DPA FFGHSE +L+IME+FGGF   F++AYH ++PKA+GFE R ++YK+YHYLNQLNLFG+ +V+  V  L  E+V
Sbjct:  307 GNAGFTKDKAVVYDPACFFGHSEMDLAIMELFGGFTDKFYNAYHSRIPKAEGFEERSKIYKVYHYLNQLNLFGNEQVKVEVIKLLRELV 395
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: L1IRH3_GUITC (Protein-ribulosamine 3-kinase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRH3_GUITC)

HSP 1 Score: 111 bits (278), Expect = 1.280e-27
Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIV 267
            GN GAT +GP +FDPA FFGHSEF+L+IM++FGGF   F+ AY+  +P+ +GFE+R+R Y LY+YLNQLNLFGD KV     ++  EI+
Sbjct:  252 GNAGATTDGPVLFDPACFFGHSEFDLAIMKIFGGFSDEFFQAYYEILPQEEGFEQRERYYLLYNYLNQLNLFGDEKVLVKCISVMQEIL 340
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A0G4EPS1_VITBC (Protein-ribulosamine 3-kinase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPS1_VITBC)

HSP 1 Score: 112 bits (280), Expect = 1.990e-27
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 GNTGATIEG-PCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIVA 270
            GNTGAT EG P  FDPASFFGH EF+L++  MFGGF   F+  YH  +P+A  FE RQ +Y+LY YLNQLNLFGDP+V+   E L D I++
Sbjct:  310 GNTGATGEGQPTAFDPASFFGHHEFDLALAYMFGGFRDEFYQEYHRAIPRAPLFESRQLIYQLYQYLNQLNLFGDPRVKGKCEELMDHILS 400
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A8C5QD09_9ANUR (Protein-ribulosamine 3-kinase n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QD09_9ANUR)

HSP 1 Score: 105 bits (263), Expect = 1.150e-25
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFG 219
            GN   T  GP +FDPASF+GHSEFEL+I  MFGGF   F+ AYH K+PK+ GFERRQ+LY+L+HYLN  N FG
Sbjct:  221 GNVAETDAGPVIFDPASFYGHSEFELAIAGMFGGFSGSFYSAYHAKIPKSPGFERRQKLYQLFHYLNHWNHFG 293
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BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Match: A0A3Q1JII7_ANATE (Protein-ribulosamine 3-kinase n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JII7_ANATE)

HSP 1 Score: 102 bits (255), Expect = 2.610e-25
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKADGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTD 258
            GN     EGP +FDP+SF+GHSEFEL+I  MFGGF   F+ AYH K+PKA GF +R +LY+LYHYLN  N FG      +V  + D
Sbjct:  126 GNVAECAEGPVIFDPSSFYGHSEFELAIAGMFGGFNSSFYSAYHEKIPKAPGFAKRNQLYQLYHYLNNWNHFGGGYRGSSVRIMKD 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31389.8477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW9_ECTSI4.650e-5285.71Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JFY5_9PHAE2.220e-5186.81Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A835Z3B4_9STRA4.900e-3666.29Protein-ribulosamine 3-kinase n=1 Tax=Tribonema mi... [more]
A0A7S0VP00_9CRYP3.940e-2960.76Protein-ribulosamine 3-kinase (Fragment) n=1 Tax=H... [more]
A0A7S0N4H8_9CRYP1.990e-2856.38Protein-ribulosamine 3-kinase (Fragment) n=1 Tax=C... [more]
A0A7S2ZNV6_9RHOD1.010e-2756.18Protein-ribulosamine 3-kinase n=4 Tax=Rhodosorus m... [more]
L1IRH3_GUITC1.280e-2757.30Protein-ribulosamine 3-kinase n=1 Tax=Guillardia t... [more]
A0A0G4EPS1_VITBC1.990e-2759.34Protein-ribulosamine 3-kinase n=2 Tax=Vitrella bra... [more]
A0A8C5QD09_9ANUR1.150e-2564.38Protein-ribulosamine 3-kinase n=1 Tax=Leptobrachiu... [more]
A0A3Q1JII7_ANATE2.610e-2554.65Protein-ribulosamine 3-kinase n=1 Tax=Anabas testu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31389contigH-paniculata_contig31389:41..1915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue1.8e-41
Seed eggNOG ortholog2880.D8LRW9
KEGG koko:K15523
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-ribulosamine 3-kinase activity
EggNOG OGsCOG3001@1,KOG3021@2759
EC2.7.1.172
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.2040238-CDS-H-paniculata_contig31389:40..1781622929967.2040238-CDS-H-paniculata_contig31389:40..178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31389 41..178 +
1691481090.4532619-CDS-H-paniculata_contig31389:40..1781691481090.4532619-CDS-H-paniculata_contig31389:40..178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31389 41..178 +
1622929967.222236-CDS-H-paniculata_contig31389:1777..19151622929967.222236-CDS-H-paniculata_contig31389:1777..1915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31389 1778..1915 +
1691481090.4627044-CDS-H-paniculata_contig31389:1777..19151691481090.4627044-CDS-H-paniculata_contig31389:1777..1915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31389 1778..1915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31389.8477.1prot_H-paniculata_contig31389.8477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31389 41..1915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31389.8477.1

>prot_H-paniculata_contig31389.8477.1 ID=prot_H-paniculata_contig31389.8477.1|Name=mRNA_H-paniculata_contig31389.8477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
GNTGATIEGPCMFDPASFFGHSEFELSIMEMFGGFEKPFWDAYHLKVPKA
DGFERRQRLYKLYHYLNQLNLFGDPKVRETVETLTDEIVAE*
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mRNA from alignment at H-paniculata_contig31389:41..1915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31389.8477.1 ID=mRNA_H-paniculata_contig31389.8477.1|Name=mRNA_H-paniculata_contig31389.8477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1875bp|location=Sequence derived from alignment at H-paniculata_contig31389:41..1915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAACACGGGGGCTACAATCGAGGGCCCATGTATGTTCGACCCCGCCAG
CTTTTTCGGACACTCGGAGTTCGAGCTGTCGATCATGGAAATGTTCGGCG
GCTTCGAGAAGCCTTTTTGGGACGCATACCACTTGAAGGTGGGTGCTCTC
TCTGTGTGCAATCACGGGGGTTAGGTGTGCCACCTTTGGTCATGGCATTT
GGCCTTGGGGTGTACGATTGTATCATTAAATATTGCTGGTATTGGAGCCA
CGGATGATACGCCCATGCAGTCCGTGTTCAGGTCCTCCACTTATGCAATA
GGGCTAGCTAGCTAGCTACTCCCAAAGGTAGGCCCATTGTCCGCGAAGAT
TCCCTGGTTAGATAGTGCTTCTTCACTATTGGTTTGAAAGACCTGTGTCG
AAACGACGCGCACCGTAGCATGTGAACCTGTCACGCGAGACTGTGTCCGT
TTACTCTACGTAGTGGTGTTAAAAATCAAAGCATCATAACACCGTTCGTT
TAACGTCTGAGGTACAGTACGGTACGTTAAACGTTAAGGTCAAGTCGCAA
CTATCGTGTAACCGGTTTCATTATTTTATTGGTGTTTAAACACTCTCAGG
CGTCGAACCTCATGGTGTATATATCTTTGTCGTGAAGTAAGAAAACACAA
GACCCTCCGGTAAGGGAGGGTTTGGTGAAGCAGAAGAACTACAAGTTAGC
CTTCCTCAAGTATTGCCTACGAAGTTACAGGGAAAAAAAACACGTTATCT
CGTTGCGGGTTCTCTATTTTTTTTTGTCGTCTTCCTCGATCTACCTACAA
TTTTTTGACGATAATATATTTCATGGTAATTTAACTGTGCCATAGGTTAG
TGTCTGTGAATTGTACTGCTAGGTTTTTTCCCATGATCGTTGCAATTCCG
AAGTTACAGGAAAAAAATACGTTATCTCGTTGGGGTCCTTCATCTATTTT
TGTCGCCTACCTCGATCTACCTACAATATGTTTGACGACAATATACATAT
ATATATATATATATATATACATGCATGTTTTTTTTTTTGTTTTTTTTCCA
GATTAATGTAATTTATGGCAAACGTTAGCGTCTGTGAATTACACTATTCG
GTTTTCTCCGATGAACGCTGAGACGGCTTTCCCGTACTACTCGCGAATCG
CAGGCGTGTCCCGGAAACAAAAAGCTTGTATGTTATTTCGTTGTCTTTTA
TGATCCCGCTTCTACACAAGCCCACGTGGCTGTGTGTTGCCCTTACAACA
GTCGCTCGAGAGGAGAGTCCTGTGTTTGATCTGGTTTTGGAAGTGAGCTG
GTGGGGCTCTCCCGCCTCCACTGGTAGACGCCTAGAATGATCCTAGTACG
AAATGATCTCCTGATCATGCTTTCCAAGTGAAGTTCCTCCTAGGTACCGC
GCATATCGTGTTATTCATTCTTCTCCTGTTGCAGTAATAAGCCCATACGT
GTAGTACATTTGTTGCTCCAATAGACCGTCTGTAGAACATGAACTTGACA
GTATTGTTTTTTAGCTTTTTTATTTTTTAAAGGTCATTCGAAATCTTCCA
CACGTCGCGCATGCTTTTCTTGCCTTGGTTGTAGCTGTTTTCTTGCAGGG
CGTAGGCGTGTAGTTTGGATCCTTGTTGGATTCTTGGTGATGTATGTACC
TTTTGTCCTTTTTGATGTCGGGAAAAATATGTGTTGCGATCGTTGTCCCC
CCCCGCCCCTCGTGTTTCTGGTCCAATCAATCGTCAGGTTCCGAAAGCCG
ACGGCTTTGAGCGACGACAACGGCTGTACAAGCTGTACCACTACCTCAAC
CAACTTAACCTCTTCGGCGATCCGAAGGTCCGGGAAACCGTGGAGACTCT
CACGGATGAGATTGTAGCAGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31389:41..1915+

>mRNA_H-paniculata_contig31389.8477.1 ID=mRNA_H-paniculata_contig31389.8477.1|Name=mRNA_H-paniculata_contig31389.8477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig31389:41..1915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAACACGGGGGCTACAATCGAGGGCCCATGTATGTTCGACCCCGCCAG
CTTTTTCGGACACTCGGAGTTCGAGCTGTCGATCATGGAAATGTTCGGCG
GCTTCGAGAAGCCTTTTTGGGACGCATACCACTTGAAGGGAAACACGGGG
GCTACAATCGAGGGCCCATGTATGTTCGACCCCGCCAGCTTTTTCGGACA
CTCGGAGTTCGAGCTGTCGATCATGGAAATGTTCGGCGGCTTCGAGAAGC
CTTTTTGGGACGCATACCACTTGAAGGTTCCGAAAGCCGACGGCTTTGAG
CGACGACAACGGCTGTACAAGCTGTACCACTACCTCAACCAACTTAACCT
CTTCGGCGATCCGAAGGTCCGGGAAACCGTGGAGACTCTCACGGATGAGA
TTGTAGCAGAGTAGGTTCCGAAAGCCGACGGCTTTGAGCGACGACAACGG
CTGTACAAGCTGTACCACTACCTCAACCAACTTAACCTCTTCGGCGATCC
GAAGGTCCGGGAAACCGTGGAGACTCTCACGGATGAGATTGTAGCAGAGT
AG
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