mRNA_H-paniculata_contig3135.8465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3135.8465.1
Unique NamemRNA_H-paniculata_contig3135.8465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3135.8465.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.190e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 GEAAQVVDGVNGWGLEGHPDGEGVLVAEIPLRSPDDAVTGWGDQ 132
            G AA V DGVNGWGL+GHPDGEGV V  IP+R+ +DA  GWG Q
Sbjct:  883 GAAAAVNDGVNGWGLQGHPDGEGVQVKAIPMRAREDADGGWGQQ 926
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3135.8465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUW2_9PHAE2.190e-1168.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3135contigH-paniculata_contig3135:3246..3839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929965.6524704-CDS-H-paniculata_contig3135:3247..33491622929965.6524704-CDS-H-paniculata_contig3135:3247..3349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3135 3248..3349 -
1691481089.828929-CDS-H-paniculata_contig3135:3247..33491691481089.828929-CDS-H-paniculata_contig3135:3247..3349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3135 3248..3349 -
1622929965.6772811-CDS-H-paniculata_contig3135:3764..38391622929965.6772811-CDS-H-paniculata_contig3135:3764..3839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3135 3765..3839 -
1691481089.8402178-CDS-H-paniculata_contig3135:3764..38391691481089.8402178-CDS-H-paniculata_contig3135:3764..3839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3135 3765..3839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3135.8465.1prot_H-paniculata_contig3135.8465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3135 3248..3839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3135.8465.1

>prot_H-paniculata_contig3135.8465.1 ID=prot_H-paniculata_contig3135.8465.1|Name=mRNA_H-paniculata_contig3135.8465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
GEAAQVVDGVNGWGLEGHPDGEGVLVAEIPLRSPDDAVTGWGDQTVPGST
AAVKVSKSK
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mRNA from alignment at H-paniculata_contig3135:3246..3839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3135.8465.1 ID=mRNA_H-paniculata_contig3135.8465.1|Name=mRNA_H-paniculata_contig3135.8465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig3135:3246..3839- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAAGCAGCTCAGGTTGTAGACGGGGTTAATGGGTGGGGGTTGGAGGG
ACACCCTGATGGTGAAGGAGTACTGGTGAGTGAAGCGGACGGAGTGTTTT
TCGTGCGTCAGAGGGGTGGCACGGGGTTTGGTGGAATACTTGTTCTAACT
TTTGCTGTGATGGTGATGGTTGTGGTTTGTGGTTTATGGTTTATGATTGT
GGTTTCATCAAATTGGATTCTGCTTCGGGGGTGTAGTTCAATTATCAAAT
TGCGATTGTTGACTGTTGCAAAGCTTGGAGTGTGACGGGTGATGAGTGGT
GAGCGACAGACACATCAGCTCGTTTCGGAGAGCACGCATGTATACCACTG
TTTTTCCCCATCCCTCAGATCCACCTCCTTTTATTCTACCTTTCACGATC
TCACTGTCATCTTGGGGGGGGGATCGGTTTCTCACCCGCGGTCTTCACCT
CTGCAACCGCGGGCTCGAATTGAATCCGAAACTCGCTCAGGTGGCCGAGA
TCCCGCTACGCTCCCCAGACGACGCAGTAACTGGATGGGGGGATCAGACG
GTCCCGGGTTCGACGGCGGCAGTGAAAGTTAGCAAGAGCAAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3135:3246..3839-

>mRNA_H-paniculata_contig3135.8465.1 ID=mRNA_H-paniculata_contig3135.8465.1|Name=mRNA_H-paniculata_contig3135.8465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig3135:3246..3839- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAAGCAGCTCAGGTTGTAGACGGGGTTAATGGGTGGGGGTTGGAGGG
ACACCCTGATGGTGAAGGAGTACTGGGGGAAGCAGCTCAGGTTGTAGACG
GGGTTAATGGGTGGGGGTTGGAGGGACACCCTGATGGTGAAGGAGTACTG
GTGGCCGAGATCCCGCTACGCTCCCCAGACGACGCAGTAACTGGATGGGG
GGATCAGACGGTCCCGGGTTCGACGGCGGCAGTGAAAGTTAGCAAGAGCA
AAGTGGCCGAGATCCCGCTACGCTCCCCAGACGACGCAGTAACTGGATGG
GGGGATCAGACGGTCCCGGGTTCGACGGCGGCAGTGAAAGTTAGCAAGAG
CAAA
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