mRNA_H-paniculata_contig1131.844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: D7FZ79_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ79_ECTSI) HSP 1 Score: 118 bits (295), Expect = 4.250e-31 Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 3 Query: 117 ARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRGLDERGYENP 365 A +++ + +C PTKVS + LEDGT+VR+AKR+GA+IPRPEIL VRR PRSNLTGPKDT KEDV E+TFRGLDE GYENP Sbjct: 96 AAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENGYENP 180
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A835Z5A5_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A5_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.270e-15 Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3 Query: 108 SGPARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRGLDERGYE 359 S P +++ A+ +C PT+ +R+ LEDGT+VR+A +GAIIPRPE+L RR ++ + GPKDT E VTF+G+DE G E Sbjct: 97 SRPQPVHVSAVALVCPETGRPTRAARRYLEDGTRVRVAALSGAIIPRPEVLLQRRRAKNLIVGPKDTEAEAAHAVTFKGVDELGNE 182
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7S2UWK4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWK4_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.380e-15 Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 3 Query: 162 PTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRGLDERGYE 359 PT+V + LEDG +VRI+K++GA+IP+PE L +R+ PR TGP+DT +DVL+VTFRG+ G E Sbjct: 109 PTRVMWRYLEDGARVRISKKSGAVIPKPEGLGLRKKPRKTATGPRDTPPDDVLQVTFRGIGADGRE 174
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A8J2X1P5_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1P5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.270e-15 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 102 PTSGPARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTF 332 PT P ++ + +C +LPT+V+R+ L+DGT+VR+A R+GAII +P IL R PRS GP+DT ++ VLEVT+ Sbjct: 93 PTKAPRSIHYSNVNLVCPVTNLPTRVARRFLDDGTRVRVAVRSGAIIEKPAILTERHKPRSTQAGPRDTPEDHVLEVTY 171
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: F0XVF8_AURAN (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF8_AURAN) HSP 1 Score: 75.5 bits (184), Expect = 7.380e-15 Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 105 TSGPARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRS-NLTGPKDTAKEDVLEVTF 332 T+ P ++ + +C SLPT+V+R+ L+DGT+VR+A R+GAII PE+LK R PR+ + GPKDT + DVL VT+ Sbjct: 58 TAAPCSVHYSNVNLVCPVTSLPTRVARRFLDDGTRVRVAVRSGAIIELPEVLKERHTPRTPGVPGPKDTDEADVLAVTY 136
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A2D4BXV7_PYTIN (50S ribosomal protein L24, chloroplastic n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV7_PYTIN) HSP 1 Score: 72.0 bits (175), Expect = 2.900e-13 Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 3 Query: 162 PTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFR 335 PT+V+ + +DG KVR++K+TG IIP+PEILK R PR TGP DTA EDVLE T + Sbjct: 102 PTRVAIRFTDDGDKVRVSKKTGTIIPKPEILKERHTPRRTETGPFDTAPEDVLESTVQ 159
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7S3V6A7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6A7_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.350e-13 Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 3 Query: 159 LPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVL-EVTFRGLDE 347 LPT+VSR+ LEDG+KVR+AK++GAIIPRPEILK RR P+S + DT+ D++ E T+ + E Sbjct: 114 LPTRVSRKTLEDGSKVRVAKKSGAIIPRPEILKERRRPKSIASTVSDTSDADLVWETTYSSIPE 177
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7S0XR06_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XR06_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.070e-12 Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 138 LRCICCSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTF 332 L C +LPT+V R LEDGT+VRIA R+G IP P+ R+ PRS L G KDT +EDVLEVT+ Sbjct: 111 LVCPITNLPTRVRRGFLEDGTRVRIAVRSGGFIPYPKFE--RKKPRSTLVGDKDTLEEDVLEVTY 173
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7R9X0H8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9X0H8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.500e-12 Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 3 Query: 159 LPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRG 338 +PT++ +++L+ G KVRI+K++GAIIPRPEILK RR P +++ DTA ED +T++G Sbjct: 150 IPTRIYKKVLDSGEKVRISKKSGAIIPRPEILKYRRKPVNSIVTESDTADEDAWAITYKG 209
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A1Z5JSX3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSX3_FISSO) HSP 1 Score: 69.3 bits (168), Expect = 3.700e-12 Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 3 Query: 162 PTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTF 332 PT+++R+ LEDG+KVR+AK++GAIIPRPEIL R+ P S+ DT +EDV E T+ Sbjct: 112 PTRITRKYLEDGSKVRVAKKSGAIIPRPEILNYRKRPVSSRVTESDTVEEDVWEQTY 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1131.844.1 >prot_H-paniculata_contig1131.844.1 ID=prot_H-paniculata_contig1131.844.1|Name=mRNA_H-paniculata_contig1131.844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp MTSFIISCPYSLALQSLPTSGPARLYLPALRCICCSLPTKVSRQILEDGTback to top mRNA from alignment at H-paniculata_contig1131:24639..25383- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1131.844.1 ID=mRNA_H-paniculata_contig1131.844.1|Name=mRNA_H-paniculata_contig1131.844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=745bp|location=Sequence derived from alignment at H-paniculata_contig1131:24639..25383- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1131:24639..25383- >mRNA_H-paniculata_contig1131.844.1 ID=mRNA_H-paniculata_contig1131.844.1|Name=mRNA_H-paniculata_contig1131.844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig1131:24639..25383- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |