mRNA_H-paniculata_contig31188.8434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31188.8434.1
Unique NamemRNA_H-paniculata_contig31188.8434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31188.8434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31188contigH-paniculata_contig31188:852..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.1295972-CDS-H-paniculata_contig31188:851..11601622929960.1295972-CDS-H-paniculata_contig31188:851..1160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31188 852..1160 +
1691481087.0755088-CDS-H-paniculata_contig31188:851..11601691481087.0755088-CDS-H-paniculata_contig31188:851..1160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31188 852..1160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.1509135-UTR-H-paniculata_contig31188:1160..12341622929960.1509135-UTR-H-paniculata_contig31188:1160..1234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31188 1161..1234 +
1691481087.0836523-UTR-H-paniculata_contig31188:1160..12341691481087.0836523-UTR-H-paniculata_contig31188:1160..1234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31188 1161..1234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31188.8434.1prot_H-paniculata_contig31188.8434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31188 852..1160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31188.8434.1

>prot_H-paniculata_contig31188.8434.1 ID=prot_H-paniculata_contig31188.8434.1|Name=mRNA_H-paniculata_contig31188.8434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MNRFEGCRHHASFFFELIRPAVDHVIFVFARFAVVHVNTESLPVVKKRLG
KYRLFRNPLLFYRCLFSWSWELSVAAVLFSHFCSKESNALFSVAVVKVKC
LL*
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mRNA from alignment at H-paniculata_contig31188:852..1234+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31188.8434.1 ID=mRNA_H-paniculata_contig31188.8434.1|Name=mRNA_H-paniculata_contig31188.8434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=383bp|location=Sequence derived from alignment at H-paniculata_contig31188:852..1234+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCGGTTCGAGGGATGTCGTCATCATGCGAGTTTTTTTTTTGAGTT
GATCCGACCCGCAGTCGATCATGTGATTTTTGTTTTTGCCCGGTTTGCAG
TCGTTCATGTAAACACCGAGAGCTTGCCTGTTGTGAAGAAACGCTTGGGG
AAGTATCGGCTTTTCCGAAACCCCTTGCTTTTTTACCGGTGTTTGTTCTC
TTGGAGTTGGGAGCTATCGGTAGCCGCGGTTTTGTTCAGTCATTTTTGTT
CGAAGGAGAGCAATGCGCTATTCTCCGTGGCTGTGGTTAAGGTGAAATGT
TTGTTGTGATTGGTCGCTGGTTATTGGGTTCTTTTGTATAACGATCCCTC
ATCTCTGGCCGGCCTCTTCTTGTGTGTATTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig31188:852..1234+

>mRNA_H-paniculata_contig31188.8434.1 ID=mRNA_H-paniculata_contig31188.8434.1|Name=mRNA_H-paniculata_contig31188.8434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig31188:852..1234+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCGGTTCGAGGGATGTCGTCATCATGCGAGTTTTTTTTTTGAGTT
GATCCGACCCGCAGTCGATCATGTGATTTTTGTTTTTGCCCGGTTTGCAG
TCGTTCATGTAAACACCGAGAGCTTGCCTGTTGTGAAGAAACGCTTGGGG
AAGTATCGGCTTTTCCGAAACCCCTTGCTTTTTTACCGGTGTTTGTTCTC
TTGGAGTTGGGAGCTATCGGTAGCCGCGGTTTTGTTCAGTCATTTTTGTT
CGAAGGAGAGCAATGCGCTATTCTCCGTGGCTGTGGTTAAGGTGAAATGT
TTGTTGTGAATGAACCGGTTCGAGGGATGTCGTCATCATGCGAGTTTTTT
TTTTGAGTTGATCCGACCCGCAGTCGATCATGTGATTTTTGTTTTTGCCC
GGTTTGCAGTCGTTCATGTAAACACCGAGAGCTTGCCTGTTGTGAAGAAA
CGCTTGGGGAAGTATCGGCTTTTCCGAAACCCCTTGCTTTTTTACCGGTG
TTTGTTCTCTTGGAGTTGGGAGCTATCGGTAGCCGCGGTTTTGTTCAGTC
ATTTTTGTTCGAAGGAGAGCAATGCGCTATTCTCCGTGGCTGTGGTTAAG
GTGAAATGTTTGTTGTGA
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