mRNA_H-paniculata_contig31181.8432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31181.8432.1
Unique NamemRNA_H-paniculata_contig31181.8432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A2J6QK58_9HELO (Kinase-like protein (Fragment) n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6QK58_9HELO)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-6
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 SRLCYMHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            S L Y+HG GLVHGD+KP N+L+    R I++ADFG S
Sbjct:  110 SALQYLHGSGLVHGDIKPQNILISSDMR-IYLADFGSS 146          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A3M0VY19_9EURO (Protein kinase domain-containing protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 134920 TaxID=2249417 RepID=A0A3M0VY19_9EURO)

HSP 1 Score: 50.8 bits (120), Expect = 4.180e-6
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    7 LCYMHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            L Y+HGLGL+H DVKP N+L+R     +++ADFG++
Sbjct:  223 LAYIHGLGLIHRDVKPSNILLRSMDGPVYLADFGIA 258          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: UPI000649F666 (casein kinase II subunit alpha-like n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI000649F666)

HSP 1 Score: 50.1 bits (118), Expect = 7.810e-6
Identity = 17/36 (47.22%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    7 LCYMHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            L + HG+G++H DVKPHN+L+   QR +W+ D+G++
Sbjct:  144 LDFSHGMGVMHRDVKPHNVLIDHDQRKLWLIDWGLA 179          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A1Q3TC15_9CHLR (Non-specific serine/threonine protein kinase n=1 Tax=Chloroflexi bacterium 54-19 TaxID=1895928 RepID=A0A1Q3TC15_9CHLR)

HSP 1 Score: 49.7 bits (117), Expect = 1.070e-5
Identity = 18/38 (47.37%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 SRLCYMHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            S L Y H   +VH D+KPHN+L+R +  H+++ADFG++
Sbjct:  121 SALDYAHRRNIVHRDIKPHNMLLRAEDNHLFLADFGIA 158          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A1Y3NPL0_PIRSE (Protein kinase domain-containing protein n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y3NPL0_PIRSE)

HSP 1 Score: 48.9 bits (115), Expect = 1.990e-5
Identity = 17/36 (47.22%), Postives = 26/36 (72.22%), Query Frame = 1
Query:    7 LCYMHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            L Y H  G++H DVKPHN+ + KK R +W+ D+G++
Sbjct:  137 LQYSHSKGIMHRDVKPHNVCIDKKTRKVWLLDWGLA 172          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A1M3B7Y8_9CHLA (Non-specific serine/threonine protein kinase n=1 Tax=Chlamydia sp. 32-24 TaxID=1895742 RepID=A0A1M3B7Y8_9CHLA)

HSP 1 Score: 48.9 bits (115), Expect = 2.000e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   13 YMHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            Y+H +G++HGD+KP N+LV K+    +IADFG S
Sbjct:  369 YLHSIGVIHGDLKPRNILVNKQPLQFFIADFGGS 402          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A1V4E2N5_9ACTN (Non-specific serine/threonine protein kinase n=2 Tax=Microbispora sp. GKU 823 TaxID=1652100 RepID=A0A1V4E2N5_9ACTN)

HSP 1 Score: 48.9 bits (115), Expect = 2.000e-5
Identity = 17/32 (53.12%), Postives = 25/32 (78.12%), Query Frame = 1
Query:   19 HGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            HG GLVH DVKPHN+L+ +   H+++ DFG++
Sbjct:  144 HGKGLVHRDVKPHNILIDRDSGHVYLCDFGIA 175          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: UPI00194FB82D (serine/threonine protein kinase n=1 Tax=Microbispora siamensis TaxID=564413 RepID=UPI00194FB82D)

HSP 1 Score: 48.9 bits (115), Expect = 2.000e-5
Identity = 17/32 (53.12%), Postives = 25/32 (78.12%), Query Frame = 1
Query:   19 HGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            HG GLVH DVKPHN+L+ +   H+++ DFG++
Sbjct:  142 HGKGLVHRDVKPHNILIDRDSGHVYLCDFGIA 173          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A8J7B6M5_9CYAN (Non-specific serine/threonine protein kinase n=1 Tax=Nodosilinea sp. LEGE 07298 TaxID=2777970 RepID=A0A8J7B6M5_9CYAN)

HSP 1 Score: 48.5 bits (114), Expect = 2.740e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 SRLCYMHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMS 114
            S + Y+H LGL+HGD+KP N+LV+ KQ  + + DFG S
Sbjct:  133 SGVAYLHELGLIHGDIKPQNVLVQNKQ--VKVTDFGSS 168          
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Match: A0A7S2HLU5_9STRA (cGMP-dependent protein kinase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLU5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.740e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    1 SRLCYMHGLGLVHGDVKPHNLLVRKKQRH---IWIADFGMS 114
            S L ++HG+G+VH D+KP NLL+  K+RH   I I DFG S
Sbjct:  203 SALAFLHGVGVVHADLKPENLLLCSKKRHDGTIKIIDFGCS 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31181.8432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2J6QK58_9HELO1.360e-657.89Kinase-like protein (Fragment) n=1 Tax=Hyaloscypha... [more]
A0A3M0VY19_9EURO4.180e-652.78Protein kinase domain-containing protein (Fragment... [more]
UPI000649F6667.810e-647.22casein kinase II subunit alpha-like n=1 Tax=Sorex ... [more]
A0A1Q3TC15_9CHLR1.070e-547.37Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1Y3NPL0_PIRSE1.990e-547.22Protein kinase domain-containing protein n=2 Tax=P... [more]
A0A1M3B7Y8_9CHLA2.000e-552.94Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1V4E2N5_9ACTN2.000e-553.13Non-specific serine/threonine protein kinase n=2 T... [more]
UPI00194FB82D2.000e-553.13serine/threonine protein kinase n=1 Tax=Microbispo... [more]
A0A8J7B6M5_9CYAN2.740e-552.63Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2HLU5_9STRA2.740e-553.66cGMP-dependent protein kinase (Fragment) n=1 Tax=H... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31181contigH-paniculata_contig31181:2026..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size117
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929959.9308705-UTR-H-paniculata_contig31181:2025..20401622929959.9308705-UTR-H-paniculata_contig31181:2025..2040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31181 2026..2040 +
1691481087.0248404-UTR-H-paniculata_contig31181:2025..20401691481087.0248404-UTR-H-paniculata_contig31181:2025..2040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31181 2026..2040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929959.951253-CDS-H-paniculata_contig31181:2040..21571622929959.951253-CDS-H-paniculata_contig31181:2040..2157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31181 2041..2157 +
1691481087.0334089-CDS-H-paniculata_contig31181:2040..21571691481087.0334089-CDS-H-paniculata_contig31181:2040..2157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31181 2041..2157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31181.8432.1prot_H-paniculata_contig31181.8432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31181 2041..2157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31181.8432.1

>prot_H-paniculata_contig31181.8432.1 ID=prot_H-paniculata_contig31181.8432.1|Name=mRNA_H-paniculata_contig31181.8432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
MHGLGLVHGDVKPHNLLVRKKQRHIWIADFGMSGGRLQ*
back to top

mRNA from alignment at H-paniculata_contig31181:2026..2157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31181.8432.1 ID=mRNA_H-paniculata_contig31181.8432.1|Name=mRNA_H-paniculata_contig31181.8432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig31181:2026..2157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCGGCTCTGTTATATGCACGGGCTGGGGTTGGTGCACGGCGACGTCAA GCCGCACAACCTGCTTGTAAGGAAGAAGCAGAGGCATATCTGGATTGCTG ACTTCGGCATGTCGGGAGGTAGGTTGCAGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31181:2026..2157+

>mRNA_H-paniculata_contig31181.8432.1 ID=mRNA_H-paniculata_contig31181.8432.1|Name=mRNA_H-paniculata_contig31181.8432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig31181:2026..2157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGGGCTGGGGTTGGTGCACGGCGACGTCAAGCCGCACAACCTGCT
TGTAAGGAAGAAGCAGAGGCATATCTGGATTGCTGACTTCGGCATGTCGG
GAGGTAGGTTGCAGTAAATGCACGGGCTGGGGTTGGTGCACGGCGACGTC
AAGCCGCACAACCTGCTTGTAAGGAAGAAGCAGAGGCATATCTGGATTGC
TGACTTCGGCATGTCGGGAGGTAGGTTGCAGTAA
back to top