mRNA_H-paniculata_contig31140.8423.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31140.8423.1
Unique NamemRNA_H-paniculata_contig31140.8423.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 250 bits (638), Expect = 1.030e-73
Identity = 140/364 (38.46%), Postives = 222/364 (60.99%), Query Frame = 1
Query:    1 ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVK-ISAPESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            +L ++  WE  +   LP  RKA+  KW+FK K   DGS+ R++ARLVAQ FSQ    D+ E  +PV R  +  TV +   +   +L  M+V AA+LN  +E+E+++K P  F    ++     +L KSLYGLKQS RCWN+ LDE L  IG  ++ +D C+Y   ++G     +VA+HVDD+++AG+  EK+ + K +I++RF++KD+G L  +LG++V ++  +  + I Q +Y   +++ Y ++ C+ V TPV+   K +SA E ++       N  E++   GSL+Y S+ TRPDI +AV+  A+ + +P  E ++  K IFRYL    ++G+ +   +N   + GF DADWA D+ DRKS
Sbjct:  171 SLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSEL-----FNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKS 520          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 247 bits (631), Expect = 2.270e-72
Identity = 142/364 (39.01%), Postives = 217/364 (59.62%), Query Frame = 1
Query:    1 ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVKIS-APESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            +L  N  W   +   LP  RKA+ +KW+F+ K   DG+V  ++ARLVAQ FSQ   +D+ E  +PVAR  +  TV +  A+H  +L  M+V  A+LN  ++EE+++K    F    ++   V RLR+S+YGLKQS RCWN+ LD  L  +G  ++T D C+Y  ++EGGE   ++AV+VDD+++AG+ + K++E K  ++++F+MKD+G L   LG++V     +  I I Q +Y + VL  + ++  +   TPV    K+  A + + +  + N     Y+   G L+Y ST+TRPDIAYAV   AR + DP  E +   K I RYL+   D G+ + G     S  G+ DADWA D++DRKS
Sbjct:    7 SLKTNEVWNLVE---LPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKE-HLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVN-----YQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKS 359          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 252 bits (643), Expect = 1.530e-71
Identity = 142/364 (39.01%), Postives = 222/364 (60.99%), Query Frame = 1
Query:    1 ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVK-ISAPESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            +L ++  WE  +   LP  RKA+  KW+FK K   DGS+ R++ARLVAQ FSQ    D+ E  +PV R     TV +   +   +L  M+V AA+LN  +E+E+++K P  F    ++   V +L KSLYGLKQS RCWN+ LDE L  IG  ++ +D C+Y   ++G     +VA+HVDD+++AG+  EK+ + K +I++RF++KD+G L  +LG++V ++  +  + I Q +Y   +++ Y ++ C+ V TPV+   K +SA E ++       N  EY+   GSL+Y S+ TRPDI +AV+  A+ + +P  E ++  K IFRYL    ++G+ +   +N   + GF DADWA D+ DRKS
Sbjct:  785 SLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSEL-----FNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKS 1134          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 243 bits (620), Expect = 3.290e-71
Identity = 140/364 (38.46%), Postives = 216/364 (59.34%), Query Frame = 1
Query:    1 ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVKIS-APESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            +L  N  W   +   LP  RKA+ +KW+F+ K   DG+V  ++ARLVAQ FSQ   +D+ E  +PVAR  +  TV +  A+H  +L  M+V  A+LN  ++EE+++K P  F    ++   V RLR+S+ GLKQS RCWN+ LD  L  +G  ++T D C+Y  ++EGGE   ++AV+VDD+++AG+ + K++E K  ++++F+MKD+G     LG++V +   +  I I Q +Y + VL  + ++  +   TPV    K+  A + + +  + N     Y+   G L+Y ST+TRPDIAYAV   AR +  P  E +   K I RYL+   D G+ + G     S  G+ DADWA D++DRKS
Sbjct:  155 SLKTNEVWNLVE---LPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKE-HLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVN-----YQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKS 507          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 234 bits (598), Expect = 4.600e-70
Identity = 140/365 (38.36%), Postives = 208/365 (56.99%), Query Frame = 1
Query:    1 ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVIA-GRREKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVKISAP--ESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            +L KN  WE      LP GRKAI +KW+FK K   +G + RY+ARLVA+ F Q    DF E  APVA+ ++   + S  A++   L  M+V  A+LN  +EEE+++K P  F   ++    V +L+++LYGLKQS R WN T+DEF+  IG  +  TD C+Y  RD+  +  + V ++VDDL++A    + +   K  +S+RF M DLG L   LG+EV RD  +G +++ Q+ ++  VL  + + +C+ V TP +  +K++    E   K  +       YR   G+++Y    TRPD+A AV   ++   DPC   +   K + RYL   P  GI F G  +G  L G+ DADWA DIE R+S
Sbjct:   19 SLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD-AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDD-TMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRS 375          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL)

HSP 1 Score: 230 bits (586), Expect = 1.300e-67
Identity = 138/350 (39.43%), Postives = 207/350 (59.14%), Query Frame = 1
Query:   46 LPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVI-AGRREKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPV--EGKVKISAPESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            LP GRKAI + W + +K  E+G VAR +ARLVA   SQ+   D+ E  APV R+ +     +  A  + E+  M++  AYLN  ++EE+F++ PP F   +     V RL+KSLYGL QSGR WN   D+ +  IGL ++  D+C+Y+ R+  GE  + V V VDDL+I A  +++ +  K  +   F MKDLG   +++GIEV RDR  GT+T+SQ  YI  +L  Y   +  GV TP+  +   K+        P+ P+  + EY+ M G L+YA+  TRPDIAYAV + ++   +P  E  +  K +F YLS   D+G+ +G + +    EG+ DA++A +++DRKS
Sbjct:   13 LPEGRKAIGSMWTYVKKSDENGLVARLKARLVALGNSQIPGIDYTETYAPVVRLESLRAAIALAAIENLEMIQMDIRGAYLNGELKEEVFMQQPPGFEDGTGR---VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYY-RERDGE-RVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARA-EYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFHYLSGTRDYGLVYGLQRDAVVFEGYCDANYAANLDDRKS 356          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME)

HSP 1 Score: 234 bits (597), Expect = 4.510e-67
Identity = 133/352 (37.78%), Postives = 211/352 (59.94%), Query Frame = 1
Query:   43 RLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDD-LVIAGRREKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVKIS---APESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            +LP G++AI TKW+FK K   +G++ RY+ARLV +  SQ    D+ E  +PV R ++   +F+  A+HD  +  ++   A+LN  ++EE+F+K P  +S  S     V RL KSLYGLKQ+ + WN+ L+E L+ +GL RS  D C+YF   E   + + VA++VDD LV +  ++     K+ +S + +MKD+GS S +LG+ V+RD     I + QS YI  VL+ + +D+C  V TP++   K++    P+S ++  E       Y    GSL+YA+  TRPDI++AV+  +R +++P +  +   K + RYL    + GI F  + +  SL G+ DADWA D++ R+S
Sbjct:  269 KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSDNSGR---VCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSE--YSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTLDMCPKSEEEKKEME--KVPYMEAVGSLLYAAQNTRPDISFAVNLLSRFSQNPGKGHWLALKRVMRYLKGTVNKGIVF--RKSAQSLTGYCDADWAGDLDQRRS 611          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A438FU81_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FU81_VITVI)

HSP 1 Score: 226 bits (576), Expect = 4.580e-67
Identity = 138/364 (37.91%), Postives = 212/364 (58.24%), Query Frame = 1
Query:    1 ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVKISAPESADKPSEPNGNS-TEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            +L+ N  WE  +   LPVG+KA+  KW++++K + DGS  RY+ARLV + F Q    D+ EI +PV +MS    V    A  +  LE ++V   +L+  +EE+L++  P  F    ++   V +LRKSLYGLKQ+ R W    D F+  IG  R   D C Y    +   + +++ ++VDD++I G   EK++  K  +S++F MKDLG+  ++LG+ + RD+ NGT+ +SQS Y+++VL  ++++E + V TP+ G  K+S  +S     E +  S   Y    GSL+YA   TRPDIA+AV   +R    P ++ +   K I RYL    D  + F G S    L+G+VDAD+A DI+ RKS
Sbjct:    3 SLLGNQTWELTE---LPVGKKALHNKWVYRKKNENDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSIIRLVLGMVATENLHLEQLDVKTTFLHGDLEEDLYMIQPEGFIVQGQE-NLVCKLRKSLYGLKQALRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDN--SYIILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSKFNMNEAKPVSTPLGGHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASL--KLQGYVDADFAGDIDSRKS 357          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 236 bits (601), Expect = 8.810e-67
Identity = 140/361 (38.78%), Postives = 211/361 (58.45%), Query Frame = 1
Query:   37 PGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVV-IGLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVKI-SAPESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKS--------NGHSLEGFVDADWAEDIEDRKS 1086
            P  LP GRK I  +W+++ K   DG + RY+ARLVAQ FSQ    D+FE  APV R  +   + +  AE + EL   +V  AYLNA ++EE++++ PP +   S   P VR LRK+LYGLKQ+G  WN+ +++ L   +G  R  +D C+Y  +   G T  +V +HVDD+  +A   + +D  +  +++ +++ DLG+   LLG E+ RDR   T++I QS YI+ VL  + + +C  V TP++  VK+   PE AD  SE  G    Y+ + GSL+YA+  TRPDI+YAV   ++ +  P    ++ +K + RYL    DFGI + GK         +   LEG+ DADW  + +DR+S
Sbjct:   49 PADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSS--PIVR-LRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLT--IVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNVKLCKEPEDADL-SEMKG--VPYQALIGSLMYAALGTRPDISYAVQALSQYSARPGITHWTAAKRVLRYLKGTQDFGILYSGKGETRIRAYYDNFRLEGYSDADWGANPDDRRS 401          
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 238 bits (608), Expect = 9.320e-67
Identity = 139/367 (37.87%), Postives = 221/367 (60.22%), Query Frame = 1
Query:    1 ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQEFSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPVEEELFVKLPPEFSPFSRDIP-FVRRLRKSLYGLKQSGRCWNNTLDEFLVVIGLDRSTTDSCLYFS--RDEGGETNLLV-AVHVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGVPTPVEGKVKISAPESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYAVHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVDADWAEDIEDRKS 1086
            AL++NG WE   P   P  +  + ++W+FK K K DGSV +++ARLVAQ +SQ    D+ E+ +PV R ++  ++ +     D+E+  M+V  A+L   + +E+++K P  +   S++ P  V +L+KSLYGLKQS RCWN+TLD FL   G  +   DSCLY    + + G+ N ++ ++HVDD++  +     ++E K  I  +F+++DLG +S +LG+ ++RDR + T+TISQS Y+  VL+ ++++EC+ V TP+E   +       ++P+    N  EY+ + G L Y +T TRPD+A AV   ++    P +E +   K I RY+    +FGITF  K     L G+ DADWA D E R+S
Sbjct:  858 ALMENGTWELVPP---PDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYR--SKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA----NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRS 1215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31140.8423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HZ03_PARCT1.030e-7338.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT2.270e-7239.01Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HEL0_PARCT1.530e-7139.01Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT3.290e-7138.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5D6YB57_9STRA4.600e-7038.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H3U8_MYCCL1.300e-6739.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C9RAA9_9HYME4.510e-6737.78POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
A0A438FU81_VITVI4.580e-6737.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V3W8_TRAPU8.810e-6738.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9IUY0_PARCT9.320e-6737.87Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31140contigH-paniculata_contig31140:12..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score239.6
Seed ortholog evalue2.3e-60
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1086
Cds size1086
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.846612-CDS-H-paniculata_contig31140:11..2791622929957.846612-CDS-H-paniculata_contig31140:11..279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31140 12..279 -
1691481086.517338-CDS-H-paniculata_contig31140:11..2791691481086.517338-CDS-H-paniculata_contig31140:11..279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31140 12..279 -
1622929957.8653955-CDS-H-paniculata_contig31140:342..11601622929957.8653955-CDS-H-paniculata_contig31140:342..1160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31140 343..1160 -
1691481086.5264535-CDS-H-paniculata_contig31140:342..11601691481086.5264535-CDS-H-paniculata_contig31140:342..1160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31140 343..1160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31140.8423.1prot_H-paniculata_contig31140.8423.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31140 12..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31140.8423.1

>prot_H-paniculata_contig31140.8423.1 ID=prot_H-paniculata_contig31140.8423.1|Name=mRNA_H-paniculata_contig31140.8423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
ALVKNGAWESEDPGRLPVGRKAIRTKWIFKRKLKEDGSVARYRARLVAQE
FSQVVDEDFFEISAPVARMSTSSTVFSQPAEHDFELEGMEVDAAYLNAPV
EEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRCWNNTLDEFLVVI
GLDRSTTDSCLYFSRDEGGETNLLVAVHVDDLVIAGRREKVDEFKHNISQ
RFRMKDLGSLSRLLGIEVRRDRPNGTITISQSSYIREVLRIYDLDECRGV
PTPVEGKVKISAPESADKPSEPNGNSTEYRGMAGSLIYASTRTRPDIAYA
VHQAARRTEDPCREDFSTSKLIFRYLSTVPDFGITFGGKSNGHSLEGFVD
ADWAEDIEDRKS
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mRNA from alignment at H-paniculata_contig31140:12..1160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31140.8423.1 ID=mRNA_H-paniculata_contig31140.8423.1|Name=mRNA_H-paniculata_contig31140.8423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-paniculata_contig31140:12..1160- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTGGTGAAAAATGGGGCATGGGAAAGCGAAGACCCGGGGAGGTTACC GGTAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGA AGGAGGACGGCAGCGTGGCACGCTACAGAGCGCGACTGGTGGCTCAAGAG TTTTCACAGGTGGTGGATGAAGATTTCTTTGAAATTAGTGCCCCCGTAGC TCGCATGTCGACGTCAAGTACTGTTTTTAGCCAGCCCGCCGAACATGATT TCGAATTAGAAGGCATGGAGGTAGATGCGGCGTATTTGAACGCCCCGGTC GAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCTCCTTTCTCCCG AGACATACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGC AGAGCGGCCGATGCTGGAATAACACTCTTGACGAATTTCTTGTTGTGATA GGACTCGACCGTTCCACTACCGACTCATGCCTTTACTTTTCCCGCGACGA AGGGGGAGAGACAAACCTTCTGGTGGCCGTGCATGTTGACGACCTGGTCA TTGCTGGTCGTCGTGAGAAAGTGGACGAGTTCAAGCATAACATAAGTCAG CGTTTTAGGATGAAAGATTTGGGCTCTCTCTCGCGCTTGTTGGGAATAGA AGTACGACGTGACCGCCCGAATGGTACCATAACCATCTCGCAGAGTAGCT ACATCCGTGAGGTACTAAGAATATACGACTTGGACGAATGTCGAGGAGTA CCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGAGTCAGCCGA CAAGCCCTCCGAACCGAAGTCGCTTGGAACTGTACTGTCGGACATAGGCG CAGGAGTACAAGAAAGCAGCAGAGGGAGAAGTGGCAATTCAACTGAATAC AGAGGCATGGCAGGATCACTCATATACGCCTCGACAAGAACTAGACCTGA TATAGCATACGCGGTACACCAAGCAGCACGTCGTACGGAGGACCCATGTC GAGAAGACTTCAGTACAAGCAAGCTCATTTTTCGTTATCTCAGTACTGTG CCTGATTTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACAGTCTGGA AGGATTCGTTGATGCCGATTGGGCGGAAGATATCGAGGACCGAAAGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig31140:12..1160-

>mRNA_H-paniculata_contig31140.8423.1 ID=mRNA_H-paniculata_contig31140.8423.1|Name=mRNA_H-paniculata_contig31140.8423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at H-paniculata_contig31140:12..1160- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTGGTGAAAAATGGGGCATGGGAAAGCGAAGACCCGGGGAGGTTACC
GGTAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGA
AGGAGGACGGCAGCGTGGCACGCTACAGAGCGCGACTGGTGGCTCAAGAG
TTTTCACAGGTGGTGGATGAAGATTTCTTTGAAATTAGTGCCCCCGTAGC
TCGCATGTCGACGTCAAGTACTGTTTTTAGCCAGCCCGCCGAACATGATT
TCGAATTAGAAGGCATGGAGGTAGATGCGGCGTATTTGAACGCCCCGGTC
GAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCTCCTTTCTCCCG
AGACATACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGC
AGAGCGGCCGATGCTGGAATAACACTCTTGACGAATTTCTTGTTGTGATA
GGACTCGACCGTTCCACTACCGACTCATGCCTTTACTTTTCCCGCGACGA
AGGGGGAGAGACAAACCTTCTGGTGGCCGTGCATGTTGACGACCTGGTCA
TTGCTGGTCGTCGTGAGAAAGTGGACGAGTTCAAGCATAACATAAGTCAG
CGTTTTAGGATGAAAGATTTGGGCTCTCTCTCGCGCTTGTTGGGAATAGA
AGTACGACGTGACCGCCCGAATGGTACCATAACCATCTCGCAGAGTAGCT
ACATCCGTGAGGTACTAAGAATATACGACTTGGACGAATGTCGAGGAGTA
CCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGAGTCAGCCGA
CAAGCCCTCCGAACCGAAGCGTTGGTGAAAAATGGGGCATGGGAAAGCGA
AGACCCGGGGAGGTTACCGGTAGGGCGGAAGGCGATTCGTACGAAATGGA
TTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACAGAGCG
CGACTGGTGGCTCAAGAGTTTTCACAGGTGGTGGATGAAGATTTCTTTGA
AATTAGTGCCCCCGTAGCTCGCATGTCGACGTCAAGTACTGTTTTTAGCC
AGCCCGCCGAACATGATTTCGAATTAGAAGGCATGGAGGTAGATGCGGCG
TATTTGAACGCCCCGGTCGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGA
GTTTTCTCCTTTCTCCCGAGACATACCATTTGTGCGCCGCCTGCGTAAAA
GCCTGTACGGCCTCAAGCAGAGCGGCCGATGCTGGAATAACACTCTTGAC
GAATTTCTTGTTGTGATAGGACTCGACCGTTCCACTACCGACTCATGCCT
TTACTTTTCCCGCGACGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGC
ATGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAAAGTGGACGAGTTC
AAGCATAACATAAGTCAGCGTTTTAGGATGAAAGATTTGGGCTCTCTCTC
GCGCTTGTTGGGAATAGAAGTACGACGTGACCGCCCGAATGGTACCATAA
CCATCTCGCAGAGTAGCTACATCCGTGAGGTACTAAGAATATACGACTTG
GACGAATGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTC
GGCACCCGAGTCAGCCGACAAGCCCTCCGAACCGAATGGCAATTCAACTG
AATACAGAGGCATGGCAGGATCACTCATATACGCCTCGACAAGAACTAGA
CCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGTACGGAGGACCC
ATGTCGAGAAGACTTCAGTACAAGCAAGCTCATTTTTCGTTATCTCAGTA
CTGTGCCTGATTTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACAGT
CTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATATCGAGGACCGAAA
GTCCTGGCAATTCAACTGAATACAGAGGCATGGCAGGATCACTCATATAC
GCCTCGACAAGAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGC
ACGTCGTACGGAGGACCCATGTCGAGAAGACTTCAGTACAAGCAAGCTCA
TTTTTCGTTATCTCAGTACTGTGCCTGATTTCGGCATTACGTTCGGCGGT
AAGAGTAATGGTCACAGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGA
AGATATCGAGGACCGAAAGTCC
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