mRNA_H-paniculata_contig3113.8420.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3113.8420.1
Unique NamemRNA_H-paniculata_contig3113.8420.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: D8LET8_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LET8_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.390e-104
Identity = 155/172 (90.12%), Postives = 164/172 (95.35%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQLS 516
            MANPVVFFDI IGG  AGRIEMTLR DVVPRTAENFRCLCTGE+G G+SGK LHFKGS+FHRVIT+FMCQGGDFTRGNGTGGESIYGEKFADENFQLKH++PGVLSMANAG NTNGSQFFLCTVVTSWLDGKHVVFG VTKGM+VVKAVEAVGSS+GKTSSPVVIADCGQ+S
Sbjct:    1 MANPVVFFDITIGGQTAGRIEMTLRQDVVPRTAENFRCLCTGEKGTGRSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEAVGSSSGKTSSPVVIADCGQIS 172
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: A0A7S2UXP3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP3_9STRA)

HSP 1 Score: 308 bits (790), Expect = 3.490e-99
Identity = 143/171 (83.63%), Postives = 160/171 (93.57%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQL 513
            MANPVVFFD+ IGG  AGR+EMTLRADVVPRTAENFRCLCTGE+G G+SGK LHFKGS+FHRVI +FMCQGGDFTRGNGTGGESIYGEKFADENFQL+H+ PG+LSMANAGPNTNGSQFFLCT  T+WLDGKHVVFG+VT GM+VVKAVE+VGS +G+TS+PV+IADCGQL
Sbjct:    1 MANPVVFFDLTIGGQAAGRVEMTLRADVVPRTAENFRCLCTGEKGTGRSGKPLHFKGSSFHRVIPDFMCQGGDFTRGNGTGGESIYGEKFADENFQLRHTGPGILSMANAGPNTNGSQFFLCTTETAWLDGKHVVFGSVTNGMDVVKAVESVGSGSGRTSAPVIIADCGQL 171
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: F0Y4J8_AURAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4J8_AURAN)

HSP 1 Score: 304 bits (778), Expect = 2.110e-97
Identity = 143/171 (83.63%), Postives = 158/171 (92.40%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQL 513
            MANPVV+FD+ IGGA  GRIEMTLRADVVP+TAENFR LCTGE+G G SGK LHFKGS+FHRVITEFMCQGGDFT+GNGTGGESIYG KFADENF+LKH+ PG+LSMANAGPNTNGSQFFLCTV T WLDGKHVVFG+VTKGME+VKA+EAVGSS+GKTS PV++AD GQL
Sbjct:    1 MANPVVYFDMAIGGADVGRIEMTLRADVVPKTAENFRALCTGEKGTGPSGKPLHFKGSSFHRVITEFMCQGGDFTKGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEIVKAIEAVGSSSGKTSKPVMVADSGQL 171
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: A0A835YSF2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF2_9STRA)

HSP 1 Score: 303 bits (776), Expect = 4.360e-97
Identity = 144/172 (83.72%), Postives = 157/172 (91.28%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQLS 516
            MANPVV+FD+ IGG  AGRIEMTLR DVVP TAENFR LCTGE+GVG+ GK LHFKGS+FHRVIT+FMCQGGDFT+GNGTGGESIYGEKF DENF LKH+ PG+LSMANAGPNTNGSQFFLCTV T WLDGKH VFG+VTKGMEVV+A+EAVGSS+GKTS PVVIADCGQLS
Sbjct:    1 MANPVVYFDMTIGGQPAGRIEMTLRKDVVPNTAENFRALCTGEKGVGRMGKALHFKGSSFHRVITDFMCQGGDFTKGNGTGGESIYGEKFRDENFTLKHTGPGILSMANAGPNTNGSQFFLCTVPTPWLDGKHCVFGSVTKGMEVVRAIEAVGSSSGKTSKPVVIADCGQLS 172
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: A0A7R9W3L4_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3L4_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.000e-95
Identity = 141/167 (84.43%), Postives = 155/167 (92.81%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIAD 501
            MANPVVFFDI IGGA AGRIEMTLRAD+VPRTAENFRCLCTGE+G G+SGK LHFKGSTFHRVI +FMCQGGDFTRGNGTGGESIYGEKFADENF L+H+ PG+LSMANAGPNTNGSQFFLCTV T WLDGKHVVFG+VT GM+VVKA+E VGS++G+TS PVV+AD
Sbjct:    7 MANPVVFFDITIGGAPAGRIEMTLRADIVPRTAENFRCLCTGEKGRGRSGKPLHFKGSTFHRVIDDFMCQGGDFTRGNGTGGESIYGEKFADENFTLRHTGPGILSMANAGPNTNGSQFFLCTVATPWLDGKHVVFGSVTGGMDVVKAIEKVGSASGRTSKPVVVAD 173
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: R1FGE2_EMIHU (Peptidyl-prolyl cis-trans isomerase n=14 Tax=Eukaryota TaxID=2759 RepID=R1FGE2_EMIHU)

HSP 1 Score: 299 bits (765), Expect = 1.930e-95
Identity = 143/172 (83.14%), Postives = 156/172 (90.70%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQLS 516
            M+ PVVFFD+ IGGA AGRIEMTLRADVVP+TAENFR LCTGE+G+GKSGK LHFKGS FHRVIT FMCQGGDFT GNGTGGESIYG KFADENFQLKH+ PG+LSMANAGP TNGSQFFLCTV T WLDGKHVVFG+VTKGMEVVKA+EAVGS +G+T+  VVIADCGQ+S
Sbjct:    1 MSCPVVFFDMTIGGAPAGRIEMTLRADVVPKTAENFRALCTGEKGMGKSGKPLHFKGSAFHRVITNFMCQGGDFTAGNGTGGESIYGAKFADENFQLKHTGPGILSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEVVKAIEAVGSQSGQTAKKVVIADCGQIS 172
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: A0A7S0I674_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I674_9EUKA)

HSP 1 Score: 296 bits (759), Expect = 1.520e-94
Identity = 141/172 (81.98%), Postives = 154/172 (89.53%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQLS 516
            M  P+V+FD+ IGGA AGRIEMTLRADVVP+TAENFR LCTGE+G+G SGK LHFKGS FHRVI++FMCQGGDFTRGNGTGGESIYG KFADENF LKH+ PG LSMANAGP TNGSQFFLCTV T WLDGKHVVFG+VT GM+VVKA+EAVGS +GKTS PVVIADCGQLS
Sbjct:    1 MGTPIVYFDMTIGGAPAGRIEMTLRADVVPKTAENFRALCTGEKGMGGSGKPLHFKGSAFHRVISQFMCQGGDFTRGNGTGGESIYGAKFADENFSLKHTGPGTLSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTGGMDVVKAIEAVGSQSGKTSKPVVIADCGQLS 172
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: A0A5J4Y3C2_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3C2_9CHLO)

HSP 1 Score: 294 bits (753), Expect = 1.200e-93
Identity = 138/172 (80.23%), Postives = 155/172 (90.12%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQLS 516
            M+NPVVFFD+  GG+  GRIEMTLRADVVP+TAENFRCLCTGE+G G+SGK L FKGS+FHRVI +FMCQGGDFTRGNGTGGESIYGEKFADENF+LKH+ PG+LSMANAG NTNGSQFFLCTV T WLD KHVVFG+VTKGM+VV+ VE  GSS+GKTS PV++ADCGQLS
Sbjct:    1 MSNPVVFFDVTAGGSPVGRIEMTLRADVVPKTAENFRCLCTGEKGTGRSGKPLSFKGSSFHRVIPQFMCQGGDFTRGNGTGGESIYGEKFADENFKLKHTGPGILSMANAGANTNGSQFFLCTVQTQWLDDKHVVFGSVTKGMDVVQKVETFGSSSGKTSKPVLVADCGQLS 172
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: A0A7S2DW34_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DW34_9STRA)

HSP 1 Score: 294 bits (753), Expect = 1.340e-93
Identity = 139/170 (81.76%), Postives = 155/170 (91.18%), Query Frame = 1 
Query:    7 NPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQLS 516
            NPVV+FD+ I G  AGRIEMTLRADVVPRTAENFR LCTGE+GVG+SGK LHFKGS+FHRVIT+FMCQGGDFTRGNGTGGESIYGEKFADENF+LKH+ PG+LSMANAGPNTNGSQFFLCTV T WLDGKH VFG+VT GM+VV+ +E+VGS  G+TSS VVIADCGQ+S
Sbjct:    6 NPVVYFDMAIAGQPAGRIEMTLRADVVPRTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFRLKHTGPGILSMANAGPNTNGSQFFLCTVPTPWLDGKHCVFGSVTAGMDVVQNIESVGSGQGRTSSAVVIADCGQIS 175
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BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Match: A0A812VDW2_9DINO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812VDW2_9DINO)

HSP 1 Score: 292 bits (748), Expect = 4.620e-92
Identity = 139/171 (81.29%), Postives = 149/171 (87.13%), Query Frame = 1 
Query:    1 MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSGKKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHSQPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVEAVGSSNGKTSSPVVIADCGQL 513
            MA PVVFFD+ IGG  AGRI M LRADV P+TAENFR LCTGE+G GKSGK LHFKGS FHRVI +FMCQGGDFT GNGTGGESIYG KFADENF LKH+ PG+LSMANAGPNTNGSQFFLCTV T WLDGKHVVFG+VT GM+VVK +EAVGS +GKTS PVVIADCGQL
Sbjct:   57 MAKPVVFFDMSIGGTPAGRITMELRADVAPKTAENFRALCTGEKGTGKSGKPLHFKGSAFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFADENFTLKHTGPGILSMANAGPNTNGSQFFLCTVKTQWLDGKHVVFGSVTDGMDVVKKIEAVGSQSGKTSKPVVIADCGQL 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3113.8420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LET8_ECTSI1.390e-10490.12Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A7S2UXP3_9STRA3.490e-9983.63Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
F0Y4J8_AURAN2.110e-9783.63Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoc... [more]
A0A835YSF2_9STRA4.360e-9783.72Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7R9W3L4_9STRA1.000e-9584.43Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
R1FGE2_EMIHU1.930e-9583.14Peptidyl-prolyl cis-trans isomerase n=14 Tax=Eukar... [more]
A0A7S0I674_9EUKA1.520e-9481.98Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeoc... [more]
A0A5J4Y3C2_9CHLO1.200e-9380.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Trebou... [more]
A0A7S2DW34_9STRA1.340e-9381.76Peptidyl-prolyl cis-trans isomerase n=2 Tax=Dictyo... [more]
A0A812VDW2_9DINO4.620e-9281.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Symbio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3113contigH-paniculata_contig3113:9909..16988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue2.6e-86
Seed eggNOG ortholog2880.D8LET8
Preferred nameppia
KEGG koko:K01802,ko:K03767,ko:K09565
KEGG Pathwayko01503,ko04020,ko04022,ko04217,ko05012,ko05016,ko05145,map01503,map04020,map04022,map04217,map05012,map05016,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
Ec32 ortholog descriptionpeptidyl-prolyl cis-trans isomerase, cyclophilin-type
Ec32 orthologEc-21_005550.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04147
Exons4
Model size1852
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3113.8420.1prot_H-paniculata_contig3113.8420.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3113 9909..15655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.619312-CDS-H-paniculata_contig3113:9908..99771622929957.619312-CDS-H-paniculata_contig3113:9908..9977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 9909..9977 +
1691481086.4315925-CDS-H-paniculata_contig3113:9908..99771691481086.4315925-CDS-H-paniculata_contig3113:9908..9977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 9909..9977 +
1622929957.6328745-CDS-H-paniculata_contig3113:10945..111171622929957.6328745-CDS-H-paniculata_contig3113:10945..11117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 10946..11117 +
1691481086.4431-CDS-H-paniculata_contig3113:10945..111171691481086.4431-CDS-H-paniculata_contig3113:10945..11117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 10946..11117 +
1622929957.6442425-CDS-H-paniculata_contig3113:14721..148341622929957.6442425-CDS-H-paniculata_contig3113:14721..14834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 14722..14834 +
1691481086.4519799-CDS-H-paniculata_contig3113:14721..148341691481086.4519799-CDS-H-paniculata_contig3113:14721..14834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 14722..14834 +
1622929957.663113-CDS-H-paniculata_contig3113:15490..156551622929957.663113-CDS-H-paniculata_contig3113:15490..15655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 15491..15655 +
1691481086.4608276-CDS-H-paniculata_contig3113:15490..156551691481086.4608276-CDS-H-paniculata_contig3113:15490..15655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3113 15491..15655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.6821575-UTR-H-paniculata_contig3113:15655..169881622929957.6821575-UTR-H-paniculata_contig3113:15655..16988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3113 15656..16988 +
1691481086.4701488-UTR-H-paniculata_contig3113:15655..169881691481086.4701488-UTR-H-paniculata_contig3113:15655..16988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3113 15656..16988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3113.8420.1

>prot_H-paniculata_contig3113.8420.1 ID=prot_H-paniculata_contig3113.8420.1|Name=mRNA_H-paniculata_contig3113.8420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MANPVVFFDIHIGGAHAGRIEMTLRADVVPRTAENFRCLCTGERGVGKSG
KKLHFKGSTFHRVITEFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHS
QPGVLSMANAGPNTNGSQFFLCTVVTSWLDGKHVVFGNVTKGMEVVKAVE
AVGSSNGKTSSPVVIADCGQLS*
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mRNA from alignment at H-paniculata_contig3113:9909..16988+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3113.8420.1 ID=mRNA_H-paniculata_contig3113.8420.1|Name=mRNA_H-paniculata_contig3113.8420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7080bp|location=Sequence derived from alignment at H-paniculata_contig3113:9909..16988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAACCCAGTTGTTTTCTTCGACATCCACATCGGTGGTGCCCATGC
CGGCCGCATCGAGATGACGGTGAGTTGTTGTGCGGTTGTCACAAGCCAAC
CGAGACAAAAGTCTCCGCTGCTCAAGTAGCCCTTCTCTTCGTAACTATTG
GTTGTCCCTTGAACTTAGATATTCAGGCGCCGAAACCATGTATTTTTCAC
CTTATATGCATTGCACATGGTTCCCCCCGCAATTATCTTGAGTACCGCGC
GGCCATCGAGTAGCTCTGGAGACTCAACGAACCGCTTGGTTATTTTTTTT
GTGTTGTTTGGGGGGCTAGTGTTTGGAAGCACCGTGCTGCTTTGCAACGA
CTCGTGGTTGTCTCCGTGTTCGTTGACGGATGGAAAGTCCGGATCGATTC
CTTCACCCATTTGTGGAAATCAAGAGGCAGGACCTAGTAGGGGATGCGTG
GTAGCCCCACGTGGTATCCCCGTCGGAACTATCACTGCACACGCAGAGCA
TGCACAACGATCTTCGCCAGGAGGGCCCTTATTCATGCATGCAGACGTGC
CCTAATGTCACAAACGCTGCGCGCCTTTGGAGATCGTCGACACACGTCAG
AACACGTTGTTTGTTGTAGTCACCAGCGTATTTTGTTCAACGGACAAACA
CGTATCACTTCCGCTGTCTTTCATAAAAACTTGAAGGTTCAACTAAATCC
ATGCTAGTGTCAGTGACCTCCCGACCTGCTTCCCGCCCTCCCTTCGAGCC
CCCCCCCGCCTCCAACCCTACAGTCCTTCCCCCCGCCGATTGCCCTGGTG
TACACCCCCCTCCTATGCAAATCTCTTAGCAGTGTAATGAACATTCCTTC
AGCGTATCCTTGTGAAATTTGTGCATGTGTAACCCCATCGTTAGCGGTGA
GAGTTTCTCCGTTTCTCACCCACCACGGGTGTTTTCGACGAACGTTGAAT
CATCGAACAAATCCCGCACACATGTCAAAACTTCGCCTTTGCGTGCCCAC
TGTGTGATGGATACAAAACTGTGTTTCATCGCGACAGCTGCGTGCTGACG
TGGTGCCGAGGACGGCTGAAAACTTCCGATGCTTGTGCACGGGAGAGAGG
GGTGTCGGGAAGTCAGGCAAGAAGCTGCACTTCAAGGGCTCCACCTTCCA
CCGCGTCATCACGGAATTCATGTGCCAGGGCGGCGACTTCACTCGTGGCA
ACGGTACTGGTGAGCTCATGAACTTGAACATACCGTCCTATATACTTGGC
AAAAGTTGGGTAGGGCTACTTCTCTGATGAAAATACCGTAGCTGCTTTAT
ACATCTGTTATGTTGAATTTGTCTCCTTGTGGGCACACCTTCGGGACGGC
AGCGGGTCAGAAGGGCAGGGGGGCCGGACTGGGCTGCATATCTTCGTTGA
TGGTTGGTTGTTGAGTTCGAACATTTCGAAGTCCTCCGGAAATGGGGGAA
CAAATGGCAGGTTCTATCCATGCCGCGCACGCGGCAAGTCCTACAAGGGT
ATGCTTTCTTAATAATCTGGGCGGACAGCGACGATCTTCTAACCACTATT
TGTCTCGTCTCCGGATCTTGGGTGCATTTTTATTACGAGGATGTGAATGC
AGTGATGTACTGATGCTCTTTATCCCTCGTGTATTCCCCGCGTGAAGATA
CAAGCGGAGGAAACTAGTGAACGGCGGAGCTCCGCGATTCGCTGTTGCGT
CGCGTTTTTCCACATGCAAGTGCATAATACCAGCTGGAGTTCCGCTTTTT
GTCATGAAAACCCGTAGGGTCACACATGCACGCATTGTTCAACTTGGATC
TGGTATCTCATTTCAACAATGAAGTTGACAAAACAGGAAATGTCTTGGTT
GTACTGGAAATATAGAAGATGAGACGCACACCCTGCTACACATGGCCCTC
TAAAGTACATGCGATATCCACCCCATATGTAAAACACCTCACATGGTTTG
TGTTTGAGGAATATAAGTATCTTGTGCATGATGGGCTAGCGTCTAGTCCA
TTATGCCCTCACTTCCGTTAACAAGATGTATTTGACCCCGTTACCTTTGC
CTGGGGTAGCCGTTATAGTTGGGTCGGGTTGAACTGGGTTAGGTCGAAAC
CACGTGGGTAGACTTCGGGGCCAACTGTAAGGTCATCGAGGTGGGTTGAA
GAGGTCGCTGGTACCACGAGAATGGCACCCAGCGTTTGTGCGTTCATTTC
TATGGGTCGTGAATATGTTCATACTTTCCCGTAATGAAATTTTTTTTCAG
TAACGGAATAACCCGTGACACAATCGGAATTGAGGCACTGTTTGAAATCA
GTGATTTCTCTCCACAGTCCCAGGTGAACAAAATGTTCGATTGCATAGGC
ACTCCTGAAGCAGGTTGGCTCTGGCTGTCTTCTATATTAGAAGAAAATGC
GTGATGTGGACTGCCCCAAATTGTTCGGTTTGTAATGCGGTTGTTGGTCT
TGATCAGTCCTTCGATCTATGATGTGTACATAATGCAATATATGCAATTC
AGTCTCATCCTCGAAGCCTCATTCCCGCTTCTTGACCTTGAACATTTATC
GAATAGTGTCTAGCATCATATTCTTCAATCGCATCAAATTCTCGATCAAA
TACCAGTATCGTATCATCTTGTACAAACACGTCTTCATTAGCATTTGTCT
TTGATTTTTATGTTGCGTACAGATAAGTTAGCATGCAAAAAATTTCGTGA
AAACAAACATGGCACCTAATCCCTACATCTTCCCGTCGATCCATGGATAA
TGACCTATGCAAAATATATTCTTACCGCCGTCGAACGTGAGCATTTTATG
GCGCGAGTATTTTTGGTCGTTGAATGTTTTGTAACATGGGTTTATCGGTA
AATGTATCGATGAGATGTATGTAGATCATTTTACATCATAATGAGAATAT
CCACGTATATTCCTCAAATTATACGAAACGGAAGTATACATTCGAAGCAA
AAACGATAGATTTCAACAAAAATGATAGCTTTCAACAAGGAAAACAAACT
GTTGACATTTATCGTAACACCGGACGTTGAAGAAACTAACACTACATGGT
AAATTTCCCTTCCGTAAGGAGAAGCGATCATGTGGCCCAAATGAGTGTAA
ATAGTAGGTACTTATTTTTTAGTGCGGATAGTGGAAGAATATTCTATCAA
GACGAAAGGAAAGGTCGAGCGTGCCCGTTTATTCAGTCGATGGGCAACAA
TGGACTCATGGCTTCCCACTAAGCCAGCCGAGTTGATTTAGGGCTATAAA
ACCTCTTCACCGTTCCATTGGAGTTGGTCATATTTTTGACGGCGAGCAAT
AGAAATCGCATTCTCGTGAAAGGGAGACGCAGCTCACGGGCATGTCTTAG
CGCAATCGTGGGAATGCTAGATGCGATAGGCTGATTCGAGCTTTGATACG
GATAGTCATGCCCCAAATGCGTCACGCATGCGATCGTGATCATCATGCGA
TTGTGATGAAAGAATATCGCTATGAATTAATCCTCGGCGAGTAAGTGGTT
TGTGACACGAAAGGATATTTTATGTCTCACATATTCGAGACAGTGCTATG
GCGAAAGCTATTTTGCTGCTGAAAAGAACGCCCCGAAATCATTCGTGCCA
CAGAGTGGATGTACAAGCCATGTTTGTACACTTCTCACCTTCAAGTCAGT
GAGTCGAAAGTTTCAACATGCTGGTTTATTCGAGGAATTCCTGTCTTCCG
ACCGCGGATATGATCAATCAGATTGAAGTGCGGGGGATATATATCGGTGT
ATACGTATCATATTCAAGATTTCCCTTCGGGATATGGTGAACTGCAGCCC
GGAAGAGACGTCCAAATCTAACAACGATAACCCAGCCCCCCTGCTCATGA
TTCCGGTTATTTGATCATCTTATTGCATTGCTGGTCAAATATTTGGGAAG
TTGTCCGCTGCCGGGCGGAGCGCAGCCACTCCAAATGGAGGCGAAGATGA
CCGTTTTAGTAGTTCCCGTTCTCTCGAATTTTTTGGAATTATTTAGGAAC
ATGCAAGAATAAAATTACTATCGGAAGTTCGCGTTCATAGGTTCAATTCA
AGCCTTTCATGGCCAAGAAGCTCTTCATACTCGTAGAGAATCCTAACTTT
GCAGATTTGTGAGATGGAGGCAGTATGTACTTGGGGGTGTTTTTGCGTTG
TAATATTTGGTTGTTGCTTATGTTACGGATATCAATTTCTATGGGGTATA
GTGTGGGTCTCGCTTGGCTGGATTCAAGACAGTCGGATATTGTGGCGTTG
TTTTTCGCTGAGTGCTTCGCTTTGCAGGCGGCTTTTTTGTCACCGACTGG
ATTTATGACACCGTGATGGCATAAGCCCTTCAGCGGCCCTGGAGTATCCG
CTACCCCTCATAAGGCGAAGGGGGTTGCCGGGCCTGCGGCCGTTGATTGT
ACTTTCTATTTGTGGCGTGGCGGCGAATCGACGTTTGGACTTTGTCGCGT
ACCTTTTGTGCAGTTTGCTTTACTCCATCGAATATACCGCTGACAGCTGT
AATCCCTGTCCGCTAAATGCTGACTCCCCCATTGCCGGGGACTGGGGATA
AACCGAAGAAGTTTGTTAGTGTGTTCATATGTTCGCGTGTTAGTCCCAAG
CATGGTTCTTCTGGCTATCGCCCTCTAAGTGTGATCGTTGGCGCCGGAGG
GTGAGGCACACCTCATGCAGTCAACTGCTTACCCAATCTCTCATGTTTTT
GTCATCTTGGCAAGGAAAGCCCTGTCTTCACTTGTCACTATTTTGGAGGG
CCTCGTGGGAAATTATCGGCACCTCTTTTTTTATCCTGTCTCGTGTATTT
TTTCGGTGCTAAGGTGGAGAGTCCATCTACGGTGAGAAGTTCGCAGACGA
GAACTTCCAGCTTAAGCACAGTCAGCCCGGCGTGCTCTCCATGGCCAACG
CCGGCCCCAACACCAACGGAAGCCAGGTCAGTCACTAGAGATATCAAGTA
CAACCACTCGCTACGTGGCAATAGTTGGTCACCGGTAACTGAAACTCGAC
AACGTCGGCGGAAGAGCCTCCTTATCCGAGAGCGGAAAATATAACGTACC
CATACGAAATGCAACGTTTTAATCATGTGAAGAGAAGGGAATCAAACCAA
GGTATTGTAGTACATGGCAAGGAAAACTCAGGCACCATGTCCGTAAGAAT
TTGAATGAACGAGTTTGTAGCAGACACCGAACGGATTGCATTGGGGTCGG
TACGCTTGAGTGCGGTTGGAGCACAGACTCGGTGGAGGCATGAAAAAATT
TCCTGTCACTGTCACAAAAGTTATCACGATGGCGCGTGCCGAATCCTCAA
CGCACCGACACGATCGTAAGTTGCCAGTCCTCAACACGAGGCTTCACCTA
TGATAATAAACAGGGTTGCTGAACGTTGTCCCATAGAATGAAAATTCATC
GTCGTGAGTAGATTGGATAACCGTTATCTGTGGAGTGCAAACATATCCCA
AGTTGTTCAGCTCGATGCCATGGTTGCCTGCGGAGAGAGAACGCATAATT
TCACTCTTTTCTCCCGCGGTCGGTGTGATTGTTGGTGGCTGTCGTCGTTG
CCTTGTGCTGGTGATGATTCTGCTTGTCCTAGTTTTTCCTATGCACCGTG
GTGACCTCCTGGTTGGACGGGAAGCACGTGGTTTTCGGCAACGTGACCAA
GGGCATGGAAGTGGTCAAGGCTGTCGAGGCCGTGGGTTCCAGTAACGGAA
AGACGAGCTCTCCTGTTGTCATCGCGGACTGCGGTCAGCTTTCCTAACCG
AACAGAAGATCTCGTTCATCTCGCGTGGATGGATCGTCGTGGTAGAATGG
GGCTTGTGGTTAGGCAGGAGATGTCATCGTTTCGCGGTCAAAGTGTAGAT
TGAGTCTTCAGACGAAGTTTGTGACCAGACTCACCTTGAACGCGTAGAGG
TGCTTGGCTTCGCTAAAAGCTAGATTATTGCGTAGGTTTTGGGAGGATGG
AATGGGGGGGGTGATTGAATCTAGTTCAAATCGTGGAGTAACGAGACAGG
AGAGTGGTATCAAGTAGCAGTACGGGGAGGATATGGGGAGAAAGGACTGC
ATACAACGTGGGGAGCTAATTGTAAGGAAAAAATGAGTTTTATGAAAAGT
TTTCGGGGTGGGAGGGGGGTGGAATAGGCGTTGATACAGGACAGCCACGT
GGAAACAGACAATAGGAATGGGCATGCACATTTGTTTGGTGTGGCGTTTC
GTCAATGCCAGTCAGCTGGTATTCCGGCTCTGACGTTCCAGCCACATGCG
TAATGTCTACACTGTACTTACTGTGGTGTTGTTGGAAGGCACGGAAATGA
ATGGTACTGAGTCGGAATGGGGGAAGCTCGTGTTCGGTCATGTATCGCGT
ACGTTTTCCCACAACCATCGTTTTGTGTAGCCTCGGTGTTCAGGAGAAGG
TAGAAGATGGATTTTCGGGTTATGTCAGGTGGACACGAGGAAAAGGGTGA
GAAATGGTTCGACTCTTTTTGATGAGAATTTAGTGCGTTAAGGGTAATAG
AGCAGCTTACGGTGACCCACAAAATCTGTTGTATGGTAGCAGGCTGTCGG
CGGGTCGTGCGTTCGTCATCAGTGTGGGTGTGAAGTCACGTTTTGTTTGA
AAATGACATGGAGAATATGGAAAAGGTTTCGCTGCGGGTGATGAATCGTG
AGTGATCTTTTTCTTTAAACAGCAAGAGCAGGGTTGAAACTGAAACGGGG
TCACAAGGGCGACGAGCCGTTCTTTTTCATTCTTGGGAAATGAGTCATAT
TTTTTATACTCACATATTGAAATGGTATATATTACTCATCCCGAGTATTT
TCGTGTCTTTCCCGTCAGGTCTACATGAGCAAAATATCGATAACCTTCCC
ACCTCCTTGGTCAAATGTATCCTGAACCACGGAGAAGGGTAATCGCGGCT
ATAGCCCCGTCTCGAAAGAAGAAAATGGGGGTCTTCCCCTTCCATCTGTT
GGTTTGTGCGTTAACCGTCAGTGGCCATCTGGATACAGCCTCAGTCGCAC
CTCATCAAGGTCGTCAGCTATATTGCCGTTCCCGTCAATTGACTCGGGAC
CACCAACGCTGTTTCTCGATGAAAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3113:9909..16988+

>mRNA_H-paniculata_contig3113.8420.1 ID=mRNA_H-paniculata_contig3113.8420.1|Name=mRNA_H-paniculata_contig3113.8420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig3113:9909..16988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAACCCAGTTGTTTTCTTCGACATCCACATCGGTGGTGCCCATGC
CGGCCGCATCGAGATGACGATGGCGAACCCAGTTGTTTTCTTCGACATCC
ACATCGGTGGTGCCCATGCCGGCCGCATCGAGATGACGCTGCGTGCTGAC
GTGGTGCCGAGGACGGCTGAAAACTTCCGATGCTTGTGCACGGGAGAGAG
GGGTGTCGGGAAGTCAGGCAAGAAGCTGCACTTCAAGGGCTCCACCTTCC
ACCGCGTCATCACGGAATTCATGTGCCAGGGCGGCGACTTCACTCGTGGC
AACGGTACTGCTGCGTGCTGACGTGGTGCCGAGGACGGCTGAAAACTTCC
GATGCTTGTGCACGGGAGAGAGGGGTGTCGGGAAGTCAGGCAAGAAGCTG
CACTTCAAGGGCTCCACCTTCCACCGCGTCATCACGGAATTCATGTGCCA
GGGCGGCGACTTCACTCGTGGCAACGGTACTGGTGGAGAGTCCATCTACG
GTGAGAAGTTCGCAGACGAGAACTTCCAGCTTAAGCACAGTCAGCCCGGC
GTGCTCTCCATGGCCAACGCCGGCCCCAACACCAACGGAAGCCAGGTGGA
GAGTCCATCTACGGTGAGAAGTTCGCAGACGAGAACTTCCAGCTTAAGCA
CAGTCAGCCCGGCGTGCTCTCCATGGCCAACGCCGGCCCCAACACCAACG
GAAGCCAGTTTTTCCTATGCACCGTGGTGACCTCCTGGTTGGACGGGAAG
CACGTGGTTTTCGGCAACGTGACCAAGGGCATGGAAGTGGTCAAGGCTGT
CGAGGCCGTGGGTTCCAGTAACGGAAAGACGAGCTCTCCTGTTGTCATCG
CGGACTGCGGTCAGCTTTCCTAATTTTTCCTATGCACCGTGGTGACCTCC
TGGTTGGACGGGAAGCACGTGGTTTTCGGCAACGTGACCAAGGGCATGGA
AGTGGTCAAGGCTGTCGAGGCCGTGGGTTCCAGTAACGGAAAGACGAGCT
CTCCTGTTGTCATCGCGGACTGCGGTCAGCTTTCCTAA
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