mRNA_H-paniculata_contig31124.8417.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31124.8417.1
Unique NamemRNA_H-paniculata_contig31124.8417.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.440e-35
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    7 DISELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTD 195
            D+SELPLTLPEMESFEPGDDPQGCL RA DWR+FQ+DGKWFARETNTMPQWAGSCWYYLR+TD
Sbjct:  502 DVSELPLTLPEMESFEPGDDPQGCLTRAPDWRFFQRDGKWFARETNTMPQWAGSCWYYLRFTD 564
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S2SQV0_9STRA (Leucine--tRNA ligase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQV0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.210e-33
Identity = 51/61 (83.61%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:   13 SELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTD 195
            ++LPLTLP+M +FEPGDDPQGCLARAT+WRYFQ+DG+WFARETNTMPQWAGSCWYYLR+ D
Sbjct:    8 ADLPLTLPDMSNFEPGDDPQGCLARATEWRYFQQDGQWFARETNTMPQWAGSCWYYLRFID 68
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S2RFM0_9STRA (Leucine--tRNA ligase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFM0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.910e-33
Identity = 55/64 (85.94%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    7 DISELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTDN 198
            D SELPL LP ME F+PGDDP GCLARA DWRYFQKDGKWFARETNTMPQWAGSCWYY RY DN
Sbjct:  551 DESELPLELPHMEDFQPGDDPAGCLARAADWRYFQKDGKWFARETNTMPQWAGSCWYYFRYIDN 614
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S2XSK2_9STRA (Leucine--tRNA ligase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSK2_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.910e-33
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 DISELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTDNT 201
            D +ELPLTLPE++ F+PGDDP GCLARA DWRYFQKDGKWFARETNTMPQWAGSCWYYLRY D T
Sbjct:  551 DEAELPLTLPEIDDFKPGDDPAGCLARAKDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYLDPT 615
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S2YMF9_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMF9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.190e-33
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:   16 ELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTDN 198
            +LPL LP ME F+PGDDP GCLARA DWRYFQKDGKWFARETNTMPQWAGSCWYY R+TDN
Sbjct:   11 DLPLKLPLMEDFQPGDDPAGCLARAKDWRYFQKDGKWFARETNTMPQWAGSCWYYFRFTDN 71
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S2XZA7_9STRA (Leucine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZA7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.070e-32
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:   16 ELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTD 195
            +LPL LPEM+ FEPGDDPQGCLARA DWRYF+KDGKWFARETNTMPQWAGSCWYY+R+ D
Sbjct:   99 DLPLRLPEMDRFEPGDDPQGCLARAVDWRYFEKDGKWFARETNTMPQWAGSCWYYMRFAD 158
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S0DVS4_9EUKA (Leucine--tRNA ligase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DVS4_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 2.540e-32
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:   19 LPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTD 195
            +PL LP+ME FEPGDDPQGCLARA DWRYF+KDGKW+ARETNTMPQWAGSCWYYLR+ D
Sbjct:    1 MPLKLPDMERFEPGDDPQGCLARAADWRYFEKDGKWYARETNTMPQWAGSCWYYLRFID 59
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S1U728_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U728_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.530e-32
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    7 DISELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTD 195
            D ++LPLTLP+M++FEPGDDPQGCLARA DWR+F+KDGKWFARETNTMPQWAGSCWYY R+ D
Sbjct:  403 DEADLPLTLPDMDNFEPGDDPQGCLARAVDWRFFEKDGKWFARETNTMPQWAGSCWYYWRFCD 465
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7R9YFC1_9STRA (Leucine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFC1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.720e-32
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    7 DISELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTD 195
            D ++LPLTLP+M++FEPGDDPQGCLARA DWR+FQKDGKW+ARETNTMPQWAGSCWYY R+ D
Sbjct:  477 DEADLPLTLPDMDNFEPGDDPQGCLARAVDWRFFQKDGKWYARETNTMPQWAGSCWYYWRFCD 539
[Close]
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Match: A0A7S4DRP5_9EUKA (Leucine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DRP5_9EUKA)

HSP 1 Score: 123 bits (309), Expect = 3.040e-31
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:   16 ELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTMPQWAGSCWYYLRYTD 195
            ELPL LPEM++F+PGDDPQGCLARA DWRYF KDGKW+ARETNTMPQWAGSCWYYLR+ D
Sbjct:  565 ELPLQLPEMDNFQPGDDPQGCLARAADWRYFLKDGKWYARETNTMPQWAGSCWYYLRFID 624
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31124.8417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G858_ECTSI1.440e-3590.48Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2SQV0_9STRA3.210e-3383.61Leucine--tRNA ligase n=2 Tax=Rhizochromulina marin... [more]
A0A7S2RFM0_9STRA3.910e-3385.94Leucine--tRNA ligase n=1 Tax=Eucampia antarctica T... [more]
A0A7S2XSK2_9STRA3.910e-3384.62Leucine--tRNA ligase n=1 Tax=Attheya septentrional... [more]
A0A7S2YMF9_9STRA4.190e-3385.25Leucine--tRNA ligase (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2XZA7_9STRA2.070e-3285.00Leucine--tRNA ligase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0DVS4_9EUKA2.540e-3284.75Leucine--tRNA ligase n=1 Tax=Amorphochlora amoebif... [more]
A0A7S1U728_9STRA4.530e-3280.95Leucine--tRNA ligase (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9YFC1_9STRA8.720e-3280.95Leucine--tRNA ligase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4DRP5_9EUKA3.040e-3185.00Leucine--tRNA ligase n=1 Tax=Lotharella globosa Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31124contigH-paniculata_contig31124:560..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.7e-26
Seed eggNOG ortholog35128.Thaps261684
KEGG rclassRC00055,RC00523
KEGG koko:K01164,ko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,ko03008,ko03013,map00970,map03008,map03013
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000372,GO:0000375,GO:0000376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004823,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0097159,GO:0140053,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs2XBAF@2836,COG0495@1,KOG0435@2759
EC3.1.26.5,6.1.1.4
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009,ko03016,ko03029
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.4175942-CDS-H-paniculata_contig31124:559..7631622929957.4175942-CDS-H-paniculata_contig31124:559..763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31124 560..763 -
1691481086.3623612-CDS-H-paniculata_contig31124:559..7631691481086.3623612-CDS-H-paniculata_contig31124:559..763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31124 560..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31124.8417.1prot_H-paniculata_contig31124.8417.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31124 560..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31124.8417.1

>prot_H-paniculata_contig31124.8417.1 ID=prot_H-paniculata_contig31124.8417.1|Name=mRNA_H-paniculata_contig31124.8417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
DQDISELPLTLPEMESFEPGDDPQGCLARATDWRYFQKDGKWFARETNTM
PQWAGSCWYYLRYTDNT*
back to top

mRNA from alignment at H-paniculata_contig31124:560..763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31124.8417.1 ID=mRNA_H-paniculata_contig31124.8417.1|Name=mRNA_H-paniculata_contig31124.8417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig31124:560..763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCAGGACATTTCTGAGCTCCCTCTGACGTTGCCGGAGATGGAGAGCTT
CGAGCCTGGGGATGACCCACAGGGGTGCTTGGCCAGGGCCACGGATTGGC
GGTACTTTCAGAAGGACGGGAAGTGGTTTGCGCGCGAGACGAACACGATG
CCGCAATGGGCAGGGTCGTGCTGGTACTACCTTCGATACACGGATAACAC
GTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig31124:560..763-

>mRNA_H-paniculata_contig31124.8417.1 ID=mRNA_H-paniculata_contig31124.8417.1|Name=mRNA_H-paniculata_contig31124.8417.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig31124:560..763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCAGGACATTTCTGAGCTCCCTCTGACGTTGCCGGAGATGGAGAGCTT
CGAGCCTGGGGATGACCCACAGGGGTGCTTGGCCAGGGCCACGGATTGGC
GGTACTTTCAGAAGGACGGGAAGTGGTTTGCGCGCGAGACGAACACGATG
CCGCAATGGGCAGGGTCGTGCTGGTACTACCTTCGATACACGGATAACAC
GTGAGATCAGGACATTTCTGAGCTCCCTCTGACGTTGCCGGAGATGGAGA
GCTTCGAGCCTGGGGATGACCCACAGGGGTGCTTGGCCAGGGCCACGGAT
TGGCGGTACTTTCAGAAGGACGGGAAGTGGTTTGCGCGCGAGACGAACAC
GATGCCGCAATGGGCAGGGTCGTGCTGGTACTACCTTCGATACACGGATA
ACACGTGA
back to top