mRNA_H-paniculata_contig31101.8413.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31101.8413.1
Unique NamemRNA_H-paniculata_contig31101.8413.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: D7FHZ5_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ5_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.160e-29
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNLR 319
            WGHDFRPEYCKLGILKRQ+ HVPVLAVTATCTDFIRDDV+ ILN+   DVVCFKSSFNR NLR
Sbjct:  124 WGHDFRPEYCKLGILKRQFAHVPVLAVTATCTDFIRDDVLKILNLAPADVVCFKSSFNRANLR 186
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: A0A399XAX0_9BACT (DNA helicase n=2 Tax=Candidatus Brocadia TaxID=380240 RepID=A0A399XAX0_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 1.010e-15
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNL 316
            WGHDFRPEY +L +LK ++PHVPV+A+TAT T  ++DD++  LN++R  V  FK+SFNR NL
Sbjct:  142 WGHDFRPEYRQLKVLKEKFPHVPVMALTATATQVVQDDIIRQLNLSRNKV--FKASFNRKNL 201
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: A0A7M5X026_9CNID (ATP-dependent DNA helicase n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X026_9CNID)

HSP 1 Score: 79.3 bits (194), Expect = 4.780e-15
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  128 HWGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNL 316
            HWGHDFRP+Y  LGILKRQ+P +P+L +TAT T  + DDV  +LN+ R  +V F++SFNR NL
Sbjct:  223 HWGHDFRPDYKVLGILKRQFPKLPILGLTATATKKVLDDVKEMLNLDRTCMV-FRASFNRPNL 284
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: Q54DM3_DICDI (DNA helicase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54DM3_DICDI)

HSP 1 Score: 79.3 bits (194), Expect = 4.970e-15
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNL 316
            WGHDFRP+Y +L IL+R++P VP+LA+TAT T+ +R+DV  I N++  + VCFK SFNR NL
Sbjct:  662 WGHDFRPDYKELSILRRKFPKVPILALTATATERVRNDV--IYNLSMRNPVCFKQSFNRPNL 721
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: A0A836IRA8_9TRYP (DNA helicase n=4 Tax=Mundinia TaxID=2249475 RepID=A0A836IRA8_9TRYP)

HSP 1 Score: 79.3 bits (194), Expect = 5.050e-15
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNLR 319
            WGHDFRP+Y KL +LKRQ+P  P+ A+TAT TD ++ DV+  L +   D + FK SFNR NL+
Sbjct:  699 WGHDFRPDYRKLSVLKRQFPRTPITALTATATDLVQQDVIKTLGLR--DAIIFKGSFNRANLK 759
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: T2MFQ4_HYDVU (ATP-dependent DNA helicase (Fragment) n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2MFQ4_HYDVU)

HSP 1 Score: 79.0 bits (193), Expect = 6.480e-15
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  128 HWGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNL 316
            HWGHDFRP+Y  LGILKRQ+P +P+L +TAT +  + DD+ +ILN+ + D + F+ SFNR NL
Sbjct:  221 HWGHDFRPDYKYLGILKRQFPLLPILGLTATASKKVLDDIKDILNL-KSDCLLFRGSFNRPNL 282
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: A0A3D0NZG0_9BACT (DNA helicase n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A3D0NZG0_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 6.570e-15
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNLR 319
            WGHDFRPEY +L +LKR++PHVP++A+TAT    +R+D++  L+I   DV  F SSFNR N+R
Sbjct:  149 WGHDFRPEYQRLSVLKREFPHVPLIALTATADHLVRNDILRHLSIPDADV--FVSSFNRPNIR 209
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: A0A0N0DUX8_9TRYP (DNA helicase n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0N0DUX8_9TRYP)

HSP 1 Score: 79.0 bits (193), Expect = 6.870e-15
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNLR 319
            WGHDFRP+Y KL +LK Q+P +P+ A+TAT TDF++ DV+  L +   D + FK SFNR NL+
Sbjct:  501 WGHDFRPDYRKLSVLKSQFPSIPITALTATATDFVQQDVIKTLALR--DAIIFKGSFNRSNLK 561
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: A2DYY2_TRIVA (DNA helicase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DYY2_TRIVA)

HSP 1 Score: 78.6 bits (192), Expect = 9.300e-15
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNL 316
            WGHDFRP+Y +LG+LK  YP +P++A+TAT TD ++ D+  ILNI    V  FKSSFNR N+
Sbjct:  500 WGHDFRPDYTQLGVLKTMYPDIPIMALTATATDAVQRDIKEILNIRNCHV--FKSSFNRPNI 559
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BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Match: E9AWZ8_LEIMU (DNA helicase n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9AWZ8_LEIMU)

HSP 1 Score: 78.6 bits (192), Expect = 9.350e-15
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  131 WGHDFRPEYCKLGILKRQYPHVPVLAVTATCTDFIRDDVMNILNITRGDVVCFKSSFNRCNLR 319
            WGHDFRP+Y KL +LKRQ+P  P+ A+TAT TD ++ DV+  L +   D + FK SFNR NL+
Sbjct:  410 WGHDFRPDYRKLSVLKRQFPRTPITALTATATDLVQQDVIKTLALR--DAIIFKGSFNRANLK 470
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31101.8413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHZ5_ECTSI1.160e-2985.71ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A399XAX0_9BACT1.010e-1558.06DNA helicase n=2 Tax=Candidatus Brocadia TaxID=380... [more]
A0A7M5X026_9CNID4.780e-1558.73ATP-dependent DNA helicase n=1 Tax=Clytia hemispha... [more]
Q54DM3_DICDI4.970e-1558.06DNA helicase n=1 Tax=Dictyostelium discoideum TaxI... [more]
A0A836IRA8_9TRYP5.050e-1553.97DNA helicase n=4 Tax=Mundinia TaxID=2249475 RepID=... [more]
T2MFQ4_HYDVU6.480e-1555.56ATP-dependent DNA helicase (Fragment) n=3 Tax=Hydr... [more]
A0A3D0NZG0_9BACT6.570e-1555.56DNA helicase n=1 Tax=Blastocatellia bacterium TaxI... [more]
A0A0N0DUX8_9TRYP6.870e-1553.97DNA helicase n=1 Tax=Leptomonas pyrrhocoris TaxID=... [more]
A2DYY2_TRIVA9.300e-1556.45DNA helicase n=1 Tax=Trichomonas vaginalis TaxID=5... [more]
E9AWZ8_LEIMU9.350e-1553.97DNA helicase n=1 Tax=Leishmania mexicana (strain M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31101contigH-paniculata_contig31101:634..2608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue3.5e-25
Seed eggNOG ortholog2880.D7FHZ5
Preferred nameRECQL
KEGG koko:K10899
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0000733,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016592,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0036310,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097617,GO:0140097,GO:1901360,GO:1901363
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0353@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons3
Model size319
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31101.8413.1prot_H-paniculata_contig31101.8413.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31101 634..2529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.9077284-CDS-H-paniculata_contig31101:633..7081622929956.9077284-CDS-H-paniculata_contig31101:633..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31101 634..708 -
1691481086.1445937-CDS-H-paniculata_contig31101:633..7081691481086.1445937-CDS-H-paniculata_contig31101:633..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31101 634..708 -
1622929956.9214272-CDS-H-paniculata_contig31101:1715..18291622929956.9214272-CDS-H-paniculata_contig31101:1715..1829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31101 1716..1829 -
1691481086.156154-CDS-H-paniculata_contig31101:1715..18291691481086.156154-CDS-H-paniculata_contig31101:1715..1829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31101 1716..1829 -
1622929956.939301-CDS-H-paniculata_contig31101:2478..25291622929956.939301-CDS-H-paniculata_contig31101:2478..2529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31101 2479..2529 -
1691481086.1651263-CDS-H-paniculata_contig31101:2478..25291691481086.1651263-CDS-H-paniculata_contig31101:2478..2529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31101 2479..2529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.9612584-UTR-H-paniculata_contig31101:2529..26081622929956.9612584-UTR-H-paniculata_contig31101:2529..2608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31101 2530..2608 -
1691481086.1753242-UTR-H-paniculata_contig31101:2529..26081691481086.1753242-UTR-H-paniculata_contig31101:2529..2608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31101 2530..2608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31101.8413.1

>prot_H-paniculata_contig31101.8413.1 ID=prot_H-paniculata_contig31101.8413.1|Name=mRNA_H-paniculata_contig31101.8413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MRRTAAPRRDTLTDRRHWGHDFRPEYCKLGILKRQYPHVPVLAVTATCTD
FIRDDVMNILNITRGDVVCFKSSFNRCNLR
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mRNA from alignment at H-paniculata_contig31101:634..2608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31101.8413.1 ID=mRNA_H-paniculata_contig31101.8413.1|Name=mRNA_H-paniculata_contig31101.8413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-paniculata_contig31101:634..2608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGTGAAATCGAAGATGTTCATGGCAGCCCTGGAGACTACCTCGAA
GAATGGACGGTTAGCTAGGGTGGTTATTGATGAGGCGCACTGCTGCTCCC
AGGCGAGATACATTAACGGATAGACGCCATGTCACGTGGTGTCAAAAAAC
ACCTTATATGTAACCAAAGCTACGGTAGGTGAGAGCTGCTGCACTCGCTC
GGCTTGCCTTCCTTTCCTGAGAAAAGAAGAGCAAAGAAACGAAAAAAACA
GCGAAATCTGATGTTAAAAAAACGTGTGGGGGATGGGAAAATTTGATATC
TGAGGCCGTCGGTTTACACTTTAACTAGCTAATATTATTGACGCGTTCAA
AATTTCATGCATGTTTCCGAGACACAATTCGACACCCCATCAGAAACGGC
CTGGTAGGCAAATGTTTGATACAAAAACGGAGAAATTAAAAGTTGGACGG
ATCGACTGACCGACCGACCGACCGACCGACCGACCGACCAACCGACCAAC
CGATCGACCGACCAATGGATCATGTAAAGACGTAATTCGGCCATCAAAAA
TTCAGTTGGCTGTATTTTTGCCTCCATTGACCACTTACAGAAGACGGAAT
AAGTTAAAAGAAGAAAAAAAATGGCGATGGGCTCGTAAGATTCTCTTTTT
TTTTTTTTTTTTTCCTAATTTTATTGTTTTTCTTTTTTTTTTAACCTCCC
ACTCACTCACTCCCTGCGTGGATCTGTCGCTCTTTCACGATCTCTTTTTT
TAATTGAATTTGCTGGATAACCGTTTCAGTGGGGTCACGATTTCCGCCCA
GAATACTGCAAGCTAGGGATATTGAAGAGACAATATCCTCACGTTCCAGT
CCTCGCGGTGACGGCAACCTGTACCGATTTCATCAGAGACGACGTGAGTA
GAAAGGAGAACGGGTATGTCGATATATATATGATACATACATGGATATGC
TTTGTGATGAATTATGTGATCTGTTCGCTATAGATTCCCTACGGAGCATA
ATTCGTAATAAATTGTACCCCCCCCGGACGAAGACGGATACTTGGAATAT
GATTGGCATGTCGATATACACATGGATATGCTTTGTGATGAATTATGTGA
TCTGTTCGTTATAGATTCCCTACGGAGCATAATTCGTAACAAATTGTACC
CCCCCCGGACGAAGACGGATACTTGGAATATGACTTATACCATCGACGAA
ACTGTGAAAAAAAATTTCGCCTGATGAAAATCTTGAGCATGAATAAGCAC
GTTTATTCTGTTTATGTGCCCTGGACAAACTATCTACGACTGCGATTAGT
ACTATCATAGTTCATTTAAAACAATGAATAAACAGAGAGTGACTGTTTTA
ATTCTGTGTTCCCGCACAATTCTGAAACTCACATGAATTACTTGAAATTT
TGAAAAAAAAATCTGAAATTCACATGAATTACTTGAAAATTTGAAAAAAT
TCTGAAACTCACATGAATTACTTGAAATTTTGAAAAAATATGAAATTTAC
ATGAATTACTTGAAATTCTGAAACTTACATGAATTATTTGAAATTTTGAA
ACATTATTCGTTGAAACTATTGGAAGTGATCTAAATCTGTAATACTGAAC
TAAATACTGTCTGCTCTCCCGTGTATACTTTTTTTTTTTTTTTTTAACCT
GGTGCTATGAGAGGACGCCATCTATCTATCCCTATTCGTGTTACGGGTGA
CCAGCTGCCCTTACGACCAAATTCCGAAAACCCGTATATTATTGAAACAT
GTAATGCCCCCAAATAGGACGAACTACTTGGGTATTAGTATTAAATCTGG
CGGCACATTTTGTTGCCGCAGCAGGAGAACTGGCAAAAATGTGTGTGTAT
GTGTGTGTGTGTGTGCTTTGTCGGGGGGGGGTTGTTTTCTTTGTGTGCAG
GTGATGAACATTTTGAACATAACGCGGGGAGACGTGGTGTGCTTCAAGAG
CAGCTTCAACCGCTGCAACCTCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig31101:634..2608-

>mRNA_H-paniculata_contig31101.8413.1 ID=mRNA_H-paniculata_contig31101.8413.1|Name=mRNA_H-paniculata_contig31101.8413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig31101:634..2608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCGCACTGCTGCTCCCAGGCGAGATACATTAACGGATAGACGCCA
TATGAGGCGCACTGCTGCTCCCAGGCGAGATACATTAACGGATAGACGCC
ATTGGGGTCACGATTTCCGCCCAGAATACTGCAAGCTAGGGATATTGAAG
AGACAATATCCTCACGTTCCAGTCCTCGCGGTGACGGCAACCTGTACCGA
TTTCATCAGAGACGACTGGGGTCACGATTTCCGCCCAGAATACTGCAAGC
TAGGGATATTGAAGAGACAATATCCTCACGTTCCAGTCCTCGCGGTGACG
GCAACCTGTACCGATTTCATCAGAGACGACGTGATGAACATTTTGAACAT
AACGCGGGGAGACGTGGTGTGCTTCAAGAGCAGCTTCAACCGCTGCAACC
TCAGGGTGATGAACATTTTGAACATAACGCGGGGAGACGTGGTGTGCTTC
AAGAGCAGCTTCAACCGCTGCAACCTCAGG
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