mRNA_H-paniculata_contig3108.8405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3108.8405.1
Unique NamemRNA_H-paniculata_contig3108.8405.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: A0A6H5JYK5_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK5_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.050e-56
Identity = 192/271 (70.85%), Postives = 209/271 (77.12%), Query Frame = 2 
Query:  182 MGRXXXXXXXXXXXXXGRQHFVSSLEELESRNDRDEAWAARRKAERDADNSEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGIGEMELERKPAKPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAELTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAE-KXXXXXXXXXXXXXXXXXXAVKSAAVAAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWEKSNQA 991
            MGR             GRQHFVSSLEELESRNDRDEAWAARRKAER+ D+ E  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A        +E K  K KGV++LIE           RMMKAKDMDMAAAP EL+RRE+EA+EAQRKKD+YMKLHAEGKT EA+VDM RLA VRKRREEAE +  XXXXXXXXXXXXXXXX     A + GP+KLNPLEVK      LKELLKER++SLQGSKKDLIARLL WEK+NQ+
Sbjct:    1 MGRGRGKGKRGGRGGGGRQHFVSSLEELESRNDRDEAWAARRKAERE-DSGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGA--------VEMKQPKAKGVSSLIEVANPNAKPKAGRMMKAKDMDMAAAPVELSRREKEAVEAQRKKDHYMKLHAEGKTQEAQVDMARLALVRKRREEAEARKAXXXXXXXXXXXXXXXXXXXXXAGSGGPQKLNPLEVKKMNPTRLKELLKERDESLQGSKKDLIARLLAWEKTNQS 262
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: D7FHS2_ECTSI (Similar to PDGF associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS2_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.920e-44
Identity = 118/166 (71.08%), Postives = 130/166 (78.31%), Query Frame = 2 
Query:  497 KPAKPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAELTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAE-KXXXXXXXXXXXXXXXXXXAVKSAAVAAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWEKSNQA 991
            K  K KGV++LIE           RMMKAKDMDMAAAP EL+RREREA+EAQRKKD+YMKLHAEGKT EA+VDM RLA VRKRREEAE +XXXXXXXXXXXXXXXXXX         GP+KLNPLEVK      LKELLKER++SL GSKKDLIARLL WEK+NQ+
Sbjct:    2 KQPKAKGVSSLIEVANPNAKPKAGRMMKAKDMDMAAAPVELSRREREAVEAQRKKDHYMKLHAEGKTQEAQVDMARLALVRKRREEAEARXXXXXXXXXXXXXXXXXXXXXXXXXXGGPQKLNPLEVKKMNPTRLKELLKERDESLHGSKKDLIARLLAWEKTNQS 167
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: A0A7S2SP28_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP28_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.040e-16
Identity = 74/178 (41.57%), Postives = 91/178 (51.12%), Query Frame = 2 
Query:  479 EMELERKPAKPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAE----------LTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEKXXXXXXXXXXXXXXXXXXAVKSAAVAAGP-----KKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLL 967
            E + E +  KPKG A +I            R +K KD+   AA  E          LTRR+RE +EAQRKK+ Y +LHA+GKTDE K DM RL   RKRREEAE+                  A + AAV         +KL+P E+K      LK+ LK R  S QG KKDL+ARLL
Sbjct:   85 ESDEEGRQPKPKGPAGVIATANPNDVKP--RNIKIKDLGKLAAAEEGSAGGNPEERLTRRQREELEAQRKKEAYQRLHAQGKTDEYKKDMERLQEARKRREEAEQKSKDNEDARAAEEK----AARKAAVDVDEDEEDVEKLDPREIKKMNPKQLKDQLKSRGLSTQGQKKDLMARLL 256
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: A0A7S2BBI4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BBI4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.270e-13
Identity = 91/173 (52.60%), Postives = 109/173 (63.01%), Query Frame = 2 
Query:  497 KPAKPKGVAALIEXXXXXXXXXXXRMMKAKDMD-MAAAPAE----LTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRR--EEAEKXXXXXXXXXXXXXXXXXXAVKSAAV------AAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWE 976
            KP K KG A +++           R MK KDM  MAAA  E    LTR+ER+A EA+RKK  Y KLHAEGKTDE + DM RL AV+ RR  +EA  XXXXXXXXXXXXXXXXXX +++A +        G  KL+P EVK      LK+ LKER   + G KKDLIARLL ++
Sbjct:   96 KPKKNKGAAGVLKTANPNDQRQD-RGMKIKDMGKMAAAEEEAEPRLTRKERDAQEAERKKAAYDKLHAEGKTDEYQKDMERLKAVQARRAEQEAAXXXXXXXXXXXXXXXXXXXXMENANLDDXXXXXXGFDKLDPREVKKMNGKQLKDALKERGLGIAGQKKDLIARLLAFQ 267
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: A0A484E654_BRELC (SAP domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E654_BRELC)

HSP 1 Score: 82.0 bits (201), Expect = 1.980e-13
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 2 
Query:  506 KPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAELTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEKXXXXXXXXXXXXXXXXXXAVKSAAVAAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWE 976
            K  G AA+ +           ++MKAKDMD  AAP EL+RREREA+E +R    Y+K H  G+T+EAK D+ RLA V++R      XXXXXXXXXXXXXX      K        + L+   +K      LK+ LKER+ S+QG KK+L+ RL+++E
Sbjct:  102 KKVGFAAVAKAQNPNSKKTANKVMKAKDMDANAAPQELSRREREALEKERSAAYYLKKHLAGETEEAKKDLARLAEVKRRX----XXXXXXXXXXXXXXXERDMGKKKVTAKNDDEPLDARAIKALKPAVLKDKLKERDLSIQGQKKELVQRLIDYE 254
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: A0A3R7IIB6_9STRA (SAP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IIB6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.070e-13
Identity = 76/157 (48.41%), Postives = 97/157 (61.78%), Query Frame = 2 
Query:  506 KPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAELTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEKXXXXXXXXXXXXXXXXXXAVKSAAVAAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWE 976
            K  G AA+ +           ++MKAKDMD  AAP +L+RREREAIE +R +  Y+K H  G+TDEAK D+ RL  V++       XXXXXXXXXXXXXXXXXX  K   V    + L+   +K      LKE LKER+ S QG KK+LI RL+++E
Sbjct:  104 KKVGFAAIAKTKNPNAKKSANKVMKAKDMDGDAAPQQLSRREREAIEKERSQAYYLKKHLAGETDEAKKDLARLKEVKR----XXXXXXXXXXXXXXXXXXXXXXKKKVEVKDNDEPLDARAIKALKPGVLKEKLKERKLSTQGQKKELIQRLIDYE 256
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: H3GIA2_PHYRM (SAP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIA2_PHYRM)

HSP 1 Score: 80.9 bits (198), Expect = 5.160e-13
Identity = 76/163 (46.63%), Postives = 99/163 (60.74%), Query Frame = 2 
Query:  488 LERKPAKPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAELTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEKXXXXXXXXXXXXXXXXXXAVKSAAVAAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWE 976
            L++  +K  G AA+ +           ++MKAKDMD  AAP EL+RREREAIE +R   +Y+K H  G+T+EAK D+ RL  V++       XXXXXXXXXXXXXXXXXX           + L+   +K      LKE LKER+ S QG KKDLI RL+++E
Sbjct:   99 LQQDKSKKSGFAAIAKTQNPNAKKNSNKVMKAKDMDGNAAPQELSRREREAIEKERAAAHYLKKHLAGETEEAKKDLARLKEVKR----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLDARAIKALKPAILKEKLKERDLSTQGQKKDLIQRLIDYE 257
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: G4ZRN8_PHYSP (SAP domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=G4ZRN8_PHYSP)

HSP 1 Score: 80.5 bits (197), Expect = 7.090e-13
Identity = 77/157 (49.04%), Postives = 96/157 (61.15%), Query Frame = 2 
Query:  506 KPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAELTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEKXXXXXXXXXXXXXXXXXXAVKSAAVAAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWE 976
            K  G AA+ +           ++MKAKDMD  AAP +L+RREREAIE +R    Y+K H  G+TDEAK D+ RLA V++       XXXXXXXXXXXXXXXXXX      V    + L+   +K      LKE LKER+ S QG KKDLI RL+++E
Sbjct:  106 KKVGFAAIAKTQNPNAKKKANKVMKAKDMDGNAAPQQLSRREREAIEKERAAAYYLKKHLAGETDEAKKDLARLAEVKR----XXXXXXXXXXXXXXXXXXXXXXXXXVEVKDDDEPLDARAIKALKPALLKEKLKERKLSTQGQKKDLIQRLIDYE 258
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BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: C3Y9A0_BRAFL (PP28 domain-containing protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Y9A0_BRAFL)

HSP 1 Score: 78.6 bits (192), Expect = 1.010e-12
Identity = 48/88 (54.55%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:  506 KPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAE--LTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEK 763
            KPKGV  LIE           ++ K  DMDM AA  E  L+R+ERE IE Q+ + NY+KLHAEGKTDEA+ D+ RLA +RK+REEA K
Sbjct:   93 KPKGVEHLIEVENPNRAKN--KLKKVTDMDMQAAEGEPRLSRKEREEIEKQKARANYLKLHAEGKTDEARADLARLALIRKQREEAAK 178
[Close]
BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Match: A0A225V344_9STRA (SAP domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=A0A225V344_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.020e-12
Identity = 76/157 (48.41%), Postives = 95/157 (60.51%), Query Frame = 2 
Query:  506 KPKGVAALIEXXXXXXXXXXXRMMKAKDMDMAAAPAELTRREREAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEKXXXXXXXXXXXXXXXXXXAVKSAAVAAGPKKLNPLEVKXXXXXXLKELLKEREQSLQGSKKDLIARLLEWE 976
            K  G AA+ +           ++MKAKDMD  AAP EL+RREREAIE +R    YMK H  G+TDEAK D+ RL  V++       XXXXXXXXXXXXXXXXXX      V    + L+   +K      LK+ LKER+ S QG KK+LI RL+++E
Sbjct:  102 KKVGFAAIAKTQNPNSKKKANKVMKAKDMDGNAAPQELSRREREAIEKERAAAYYMKKHLAGETDEAKKDLARLKEVKR----XXXXXXXXXXXXXXXXXXXXXXXXXVEVKDDEEPLDARAIKALKPAVLKDKLKERKLSTQGQKKELIQRLIDYE 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3108.8405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYK5_9PHAE1.050e-5670.85SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHS2_ECTSI2.920e-4471.08Similar to PDGF associated protein n=1 Tax=Ectocar... [more]
A0A7S2SP28_9STRA1.040e-1641.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BBI4_9STRA1.270e-1352.60Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A484E654_BRELC1.980e-1344.59SAP domain-containing protein n=1 Tax=Bremia lactu... [more]
A0A3R7IIB6_9STRA5.070e-1348.41SAP domain-containing protein n=3 Tax=Phytophthora... [more]
H3GIA2_PHYRM5.160e-1346.63SAP domain-containing protein n=1 Tax=Phytophthora... [more]
G4ZRN8_PHYSP7.090e-1349.04SAP domain-containing protein n=8 Tax=Peronosporac... [more]
C3Y9A0_BRAFL1.010e-1254.55PP28 domain-containing protein n=4 Tax=Branchiosto... [more]
A0A225V344_9STRA4.020e-1248.41SAP domain-containing protein n=23 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3108contigH-paniculata_contig3108:3550..11640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue4.9e-39
Seed eggNOG ortholog2880.D7FHS2
Preferred namePDAP1
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008283,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0019838,GO:0023052,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048008,GO:0048407,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0065007,GO:0070013,GO:0071944,GO:0097159,GO:0097708,GO:0099503,GO:0101002,GO:1901363,GO:1904813
EggNOG free text desc.Casein kinase substrate phosphoprotein PP28
EggNOG OGsKOG3375@1,KOG3375@2759
Ec32 ortholog descriptionCasein kinase substrate, phosphoprotein PP28
Ec32 orthologEc-07_006570.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size3015
Cds size813
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.903511-UTR-H-paniculata_contig3108:3549..55701622929955.903511-UTR-H-paniculata_contig3108:3549..5570Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3108 3550..5570 -
1691481085.615627-UTR-H-paniculata_contig3108:3549..55701691481085.615627-UTR-H-paniculata_contig3108:3549..5570Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3108 3550..5570 -
1622929956.026168-UTR-H-paniculata_contig3108:11459..116401622929956.026168-UTR-H-paniculata_contig3108:11459..11640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3108 11460..11640 -
1691481085.7099273-UTR-H-paniculata_contig3108:11459..116401691481085.7099273-UTR-H-paniculata_contig3108:11459..11640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3108 11460..11640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.9192472-CDS-H-paniculata_contig3108:5570..56931622929955.9192472-CDS-H-paniculata_contig3108:5570..5693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 5571..5693 -
1691481085.6332242-CDS-H-paniculata_contig3108:5570..56931691481085.6332242-CDS-H-paniculata_contig3108:5570..5693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 5571..5693 -
1622929955.9514427-CDS-H-paniculata_contig3108:6526..66881622929955.9514427-CDS-H-paniculata_contig3108:6526..6688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 6527..6688 -
1691481085.6511834-CDS-H-paniculata_contig3108:6526..66881691481085.6511834-CDS-H-paniculata_contig3108:6526..6688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 6527..6688 -
1622929955.971785-CDS-H-paniculata_contig3108:7421..75441622929955.971785-CDS-H-paniculata_contig3108:7421..7544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 7422..7544 -
1691481085.6706316-CDS-H-paniculata_contig3108:7421..75441691481085.6706316-CDS-H-paniculata_contig3108:7421..7544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 7422..7544 -
1622929955.9898245-CDS-H-paniculata_contig3108:8827..90481622929955.9898245-CDS-H-paniculata_contig3108:8827..9048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 8828..9048 -
1691481085.6813395-CDS-H-paniculata_contig3108:8827..90481691481085.6813395-CDS-H-paniculata_contig3108:8827..9048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 8828..9048 -
1622929956.006358-CDS-H-paniculata_contig3108:11275..114591622929956.006358-CDS-H-paniculata_contig3108:11275..11459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 11276..11459 -
1691481085.6936517-CDS-H-paniculata_contig3108:11275..114591691481085.6936517-CDS-H-paniculata_contig3108:11275..11459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3108 11276..11459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3108.8405.1prot_H-paniculata_contig3108.8405.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3108 5571..11459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3108.8405.1

>prot_H-paniculata_contig3108.8405.1 ID=prot_H-paniculata_contig3108.8405.1|Name=mRNA_H-paniculata_contig3108.8405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
MGRGRGKGKRGGRGGGGRQHFVSSLEELESRNDRDEAWAARRKAERDADN
SEEGSSSSGGEGEEDDGSGSDAETPGAGVKESQGSDSAADVAGATAGIGE
MELERKPAKPKGVAALIEVENPNAKPKAVRMMKAKDMDMAAAPAELTRRE
REAIEAQRKKDNYMKLHAEGKTDEAKVDMVRLAAVRKRREEAEKRKAEEQ
AEEAATKEKMEKAVKSAAVAAGPKKLNPLEVKKMNPARLKELLKEREQSL
QGSKKDLIARLLEWEKSNQA*
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mRNA from alignment at H-paniculata_contig3108:3550..11640-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3108.8405.1 ID=mRNA_H-paniculata_contig3108.8405.1|Name=mRNA_H-paniculata_contig3108.8405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8091bp|location=Sequence derived from alignment at H-paniculata_contig3108:3550..11640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGTCGTGGTCGAGTAGCGACATTAGGCACTTCTACTTCGGATAACGG
GTCTGAGCAACTATCGAATAACATAGAGTGCTGATATTCTACGCAAAATT
GGTCATTTTCCCACCACCCCAGCACCATGCAAGAGCACTACGTACAGAAT
ACACAGAGGTGCAGCAACGCAAAGCATCTCCATGGGTAGGGGCAGGGGTA
AGGGTAAGCGCGGTGGGCGAGGAGGTGGGGGGAGACAGCACTTTGTTTCG
TCTCTCGAAGAGCTTGAGTCTCGCAATGATCGGGATGAAGCATGGGCGGC
GCGGCGAAAGGCCGAACGCGATGCCGACAACTCTGAAGAGGGGAGCAGCA
GCAGCGGCGGCGAAGGTAAGTGTGTTTGGTTCGTAACACAGGCAGGGGGG
CACGGGAGGTGGCTGGGTGTGATTGCATTGAAGGTAGTGTTGTTGTGTGA
GCACGTGGACACTGTGCTGGTGCAGCGCAGATCAGATTAGATTAGCAGTC
TGTCATTTGCATTCAATCAAGGAAAGTTGCGATAATTCTCATGGCAGCCG
CAATATCAAAAGTAGCCAGCCATGATATATGTTTACAGTAGTATCAACAG
TACAACAGAGCTATTTACGAGGTCAGTGCAGACATTTGTTCCGCTTTATG
TGTTTTGTTGTGTTTATTCCGGTACATCTTCATTCCTGTTTCCTTTATAT
ACAGTAGTAGTATATTTCCTTCTGAGACAAGGAAGACACCGAAAATGATG
CCGTTGGAAAACATCTCTAGACATGACGATAATGATCTCATTTGGGTTTC
ATGTTTCACCATACATGACGTTTTTAAATTTTTTAATAGATGAACATAGA
GAGAACGTACAGTCAGCACAGTACAGTACCAACTCACTTGTAAGACCCTG
ACGATTATTGTGCACGAGGCTCCAAACGCAACTATTTTCTGCGCAGAGCA
GGCTTCACCTGCTATACTGAATATGGGTATTTTGCGTTTAATGTACAGGT
ATTAATAGAGGGGCACCACTTCAGCACAATTAAGTACCTGCACTAGCGGT
GCAAAAATATTGAGCCTTGGTTTCTTGTAACGTGACATCTTGAGATCAGA
CCGCCACTGACTAGAGTTATAACAATAAATAATAATGTGGTCCGGAATGA
TGGGCCTATTGATGTCTTTAGAAAACCGAGTTTTCAACGTGGTCAAGGTA
TACTCCGCGGATTTATGGCGTAGCACAAGCGACCCTCATGTATATTTGTT
GTGCCCAAGAACAAACAGAAAATCAAACGATCACGCTGGGTGCACGTAGC
CCCATATTCCCACCCATTTTTTCATCTGTGTTATGCGTCTCCTTTCAAGT
GGCTTCAAGCTTCACTGAACTCGTTTAGCGCGTCAAAAACATCACATTTT
TTCTAGTAGTTTGATCTCTCCGTACCTTGTAGTTAATTGAAGAACAAGAT
CATGCTGGGCCGGGTCTCCAGAAAAGTTAAACACTCAAATCATAACCCAA
CGATAGACCAGTTACGATACATGAAGAAGCGCGATTTGTGTCGGTCGATC
TCCCCAACTCGGTTTCTGTTCGCACTATTACGAGCTGATAGCTGTTCGAG
CAGTAGCGACTCTCAGGACCTCAGGACAAAAGGTAGTAGCTCCCATCCTT
ATCATGGGAAAACTGTTTGATCGTTAAGCATTACGTTCGTTGATCGGAAC
TTCTTCGTGAACAAGGCCATTGACACAGTCCACCTCCCGCGCGCGCGAAA
TTTAAAGTGCTGTGCGGTACTCGGGGCATTGTCACACCTGATGAGTATAC
AGCATTTGGTTACCCGAACCCCCATCGCAAAATCCGATCGGCTTACTAGG
GCAAGGATGGATGATGACCATTGATGTTAAACACAAGATCACCCTTGGAG
AACGCAGCCTAGAAGGCTAATATCCCTCATACTCCGTCCCGGCGTAGTTG
GGATGCAAGGTTGATTGTAGACACACTACGGACTGCTTTTCATGAGTGCC
CCCCCCCCTCCCCCCGAGTGTCACATGGTTTAAGTTTTTCTTGTCATCAA
TCATACGCGGTGTACACCCCCCCGTAATTCCTCTAATTTTGGTGATGAGT
ATGACATATATCTAGCCGCAAAAGATTTATTGTAGATCAAACGACCTTGG
GTATGCACAAATAAATTGTGACAAAGCAGCAAGCGGGTATCCTATTTAGA
AGGATCGCTATTGCCATTAATTATATAAAGCATCTTGCCCCTCTCTCCCT
CGTTTCACCTCTTCCGCCCTCTTCGAATATCACTCCTAGTGAAAACGGCC
AAACTGGCACTCTCCCCAAGTGTATTTCACCGTGAGTTACCATGCAGTAG
GTGGCCTTACAAAAGGTACAGGCAGAGAGGTACTGCGCTAAAAAAGATAA
CCGTTTTTTAGCGTGAATTGGCTCCTATATGAGGTATGTGCAGCACCGTA
CATATGAGGCACACGCGGTAAAATAAACAAGATGTACATTCCAGCCTATC
ACCACAGTGGTACACCATAAAAGCGTTCTCATCCCGTATGGAGCTCCACA
ATAGCGTCTAGTTATGTTTTTCCTGTCGAACTTGGGGCACAGGCGAGGAG
GATGATGGCAGTGGTAGCGACGCTGAAACCCCAGGGGCGGGTGTAAAGGA
AAGTCAAGGGAGCGACTCGGCAGCAGACGTAGCGGGAGCTACGGCGGGCA
TCGGTGAGATGGAGCTCGAGCGGAAGCCTGCGAAGCCGAAGGGTGTGGCG
GCGCTGATCGAGGTCGAAAACCCTAACGCAAAGCCTAAGGCGGTCAGGAT
GATGAAGGCGAAGGTGCGATATATCGAGATCACAGACAGCAGATCTGTTT
TTGCTGCCAGTGGTGTGTGTTCGTGACACTGTTCATTCATCTGGTTTTTA
AATTTCGATTTGATCCTGTATAGCTCTTGTTGTGAATAAGCCTGCACGTG
CAGGACACCCAGCCACACACACCTGCACTAAGTCGTCTCGCTACAACATA
AATGAGCGACTTTTTGCCATCCGCCACATTTCGTAAAACGCGCGAAATTT
GGTGCAGGTTATAACTAAATTTCGGGGTCTGGAGATGAACTAAAAAAGCC
ATTCAGGACGGACCAAATCAAAATTTACAGACATTCACATATTTGCGTAA
AAACTACATACATAGTGAGTGCATCTCACGTTTCCGACAATCATGGCTAA
CCATATAGAAATTCAGCATAGTTTACGAGAAAAAAAAATTTACCGGAACC
TGTTGACCTTCCGGGTTCCGTTTTAGGCAGTTCTGACGCGTGCGCGCAAC
ACGTCTCCTTGCTCAAATCGGCACCCCTTAATAGTTGCTGGATTACGTAC
TATTATCCTCAAACTGGAAAAAAAAACAAAAAACGAAGGGGTGCCCCTAT
GTTTTGCATGCCGCAGCTAGTTAGGTCATCGACGACGCTCTCGCTCTCTC
TCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTCTTGAAATAGTCACTAGAA
GGTCTCTGTTGCACGTATTGTTACTATTGTTCGCCGCAGTGAGTACTGAA
ACGCGTAAAATATTCCATTATCGAGTCAATCTGCCGGAAAGCCACTAATG
TTGAGGTAAAATGCCATTCTGTATTACTACTGATGAAGGCGGAGAAATAC
GAGGCACCTAGGGGGGGGTACGGACTCGAGAAATATGATAATATGCTGGT
GTGTATCAGCTCTTGTGTGCCGCAAATATGTTGCTACATGCAGTAATACC
TTCTGTACATTTTGTCGCCGGGCGCAACTCTACAGTATCATGCTCTTAGC
GCTGTGCAGCTGACTGCCAGCGCTCGAAGGACCCAATGTGTGTACTGCCG
TTTCCATTGCAAGGGTTCTTCTGTACGTACCAGTAGCTGGTGGTGAAGAG
GGTGGTTTAGTTGTAGATGGTACTGATTATATCTTCGTACACACCTCCCC
CTGACGTAGTCGTTTTTGTGAAATTGCACACTCGGTAGTACGGAATTGAC
TGGGCGTGCTTGTTCGCTACCTATACCTTCTGCGCGCTTCGTCCCGTTTC
GTCTCGTCGGATTTTGAAATATGGATGTCTGATGCGACGTGAGCAGGACA
TGGACATGGCTGCCGCTCCAGCAGAGCTGACGCGGCGTGAGCGCGAAGCG
ATAGAGGCTCAACGTAAGAAGGATAACTACATGAAGCTTCATGCCGAAGG
AAAAACAGATGAGGCAAAGGTGTGGTGCTGTATTCACCTACAGGAATTGC
AGGAAACCTACTTCCGGGTGGATGCAGGGGAGGAGGGGGGCTATAGTTAT
CGCCTGCAGGAATTGCACGAAATCTCCTTCGTAAACGGGAGGGGATTCAA
GTGGTTCTATCCTATGGTATCGTGCTACATACTGGTATTAACAGTTCTGT
ACTCATACGTGAATGAGCCAAGAATTGTCTTGCATGTCATCGAGTATAAC
ATGAAATAGGATGTGTCTGTGATATTCGATCTTGTACAGGGTGACTTGCA
CATGGTATCGGACGAGACGGACGAATAGGCGCGTCTACGGTTGCTCCCTC
GATAATCGCTCTTGCCTCAAAAGTAATTTCGGATCTATTGGCTACGTGAA
AGTGACAGCTGACCTTGATTGAGGTGGTCTGTGAGCGTGGACAGTAACGT
ACCCGGCCCATGGTTGCGCAGCAGCTACTATAGTTGGTGCGGTAAAGGGT
GTGATTGGTTCTTTGGAATGTGATTCTTTTGCTTGTGCTCACCTCTGACC
CCTCGACGCCCACTTGTACGATGTGCTCGTTTGTTCTTGTCGAAAGCCCC
AAAAAAGTGATTCATACTTATTTTTTACTCCTCGGAAGGGTACATAATGG
GTGAGGTTGGTGACCTCACTTCCGAGAATCATCTGCCAATTTTGAAGCGA
AGACACGGCCTTAGCGTCCTCTGTCGTTGCACGGCTTTTGCCGCCCCGCC
AGGTTGATATGGTGCGGCTCGCCGCGGTGCGGAAGCGTCGAGAGGAGGCC
GAGAAACGAAAGGCCGAAGAGCAAGCCGAAGAGGCCGCTACTAAGGAAAA
AATGGAAAAGGCAGTCAAGAGTGCTGCTGTGGCCGCAGGTCCAAAGAAGC
TCAACCCTTTGGAGGTGCGCGTGCGAGAGCTAGATATGGAAGGATTATGT
GACTGCAGCTGTTCTTGATAGACGAATTTTTGTTGGGCGCGTACAACCCT
CGAAATAATTGTGTGGCTGACTTTTATGTACTGGTGATGAAGGTTGAAAC
GCGCGTCTTTTTTGTGCGCATGGACAATGAAAAAGGGGTTGAATTTTATG
AGAGATACATGCGATTTATTCTTTTTAATATTTTCTAGATAAAAGACCCG
TCTTGGCTGTACAAACATTTGCGTCGGGATAACGTATGAAGAGGCTGTTT
CGGAACAGAAAATTGCCCCTGTGGGATGTATCTCGAGAGAGTGCTGCAGA
CGGCTCGTTTTGCCCAAAACCATAAACCATTTTGTCTTTTTGCACTACGT
GATAACTCACTGACTGTTTGTTGTGGAGTTACTCTCTGTACAGCAATGGT
TCCCTATCTCAGTGAATCAGGACGTGGGCGGTGATATTTTTGGTCGTTGT
TGTCGCGTTGCCTGCTGTTTTAGTCACGAGGGTCAAGAATTTCATTCCCC
GGACGTGTACGACAACTCGGGAGCTTTCATGACGAATTGTGCAAATTATT
CGCATGAGATTTCGAAATGTGCATGCTCATGAACGTATATATTTGCTGGT
TATTCGTCAACTATTACTCGGAGCGCTCGTGAATGGCCCAAGGGCATGGA
GAATAAACGCGCTCGAGTTTAAACGATTAGATGAAGACCTTGTATTTTCC
GTGGCGGATGCTTCAGGTGGTTTTTGTTGTTGTTGTTGTTCCTGGTGCCT
GCTTCGTGATGATGCTCCTCCCGTTTTTTTTTGTTTTTTTTTAACAGGTG
AAGAAGATGAATCCAGCGAGACTTAAGGAGCTACTCAAGGAGCGTGAGCA
GAGCTTGCAGGGAAGCAAGAAAGATCTCATCGCCCGACTATTGGAGTGGG
AAAAATCAAACCAAGCATAGTACATACTACCGTGGCCTACATAGCCTTGA
TGTAGTTTTTACAGGGTAAACCTTCGCGGTACACATGTACGAGCTGAACC
CACCCAAAAAATCTCAAATGTTCCACAGGCCAAATTTCATGATTTAAAGC
GAAAAACTAACACAAACGTGAGATTGCCTACCACTACGTAAGCACACACG
GAGTGCACCGCGCGCTCTGATCGTCCATCCGAGCACTTTCGGTGTTTCAA
AGTATATGACAATACGAAAGAAACATGAACTGCTAGCGGTTATTTTCCAA
ACGTGTTGGTACAGAAGTCAATTTATGTTACACTTGTGCTCGATTCATGC
CCCCATTATTCTCAAAATTGGTTTGCCGTTCGTATTGCTCACACGGACGA
AAACCGTGATACCGGTTTGGGCTCCCAACTCGCCACCGTTCCAAAGTTGT
GGCTGAAGCAAAATTTGGGTATACTATCTACGTTTTTGTATGGGATTGGG
ACGTATGTAATACCTTTATAAAATGAGAATTTTCACGTTTTTTTTTGTTT
TTGTTTGTTTAGATGTGAAATTTTCAACGTAAGTGCGTATCGAAATTTCG
GAGGCCTCGATTGAATAAACACTTGGATTTTTTTTCGTTCCGAAGATAAA
AACGGATTTTTGAATCCCAAAAGCATTCATGGGTCAATATATTTCGAGCA
AAAACATCTAATGGTGTCGTCAATGGAGGTCTCTGAAATTTTGATGCGCA
CCTACTCTCAAAATTTCAGGTCCAAACTCCAAAACACCAAGTGAGAAATG
CCCATGCGATGTTTTTGGTCTTTGTTGTTGGGCCCAAATTGTAGCACCCG
CCTGGCGTTAGCCTTGCACAGCGCTCCAGAGCTCGTTTAATTAGTGGCGA
TAAAACTTTCGATGTCTCTTGGAAAGATATCGGTGAGATGAGACACTGTT
ATTAGTAAAAAAATGTGGAGCAGTAACCGTGCCAGTTCTTGCAGGATGGA
TAGGCGGTTGGTGTGCGGATGGTCTCCTTGACACTGTCGATAAATCCTTT
TTTGCTAGACGAGTTGTGTGTGTGTTTCTTTTGGAACATTCATTATCGAC
GGAGAGAAAACTCGCCCGAGAAAAGGAAAAAAAATCGAGTAAGGCGTTTA
GCTATATCTGCTGTTCGTCAACGTGGTATATGTATACGACTACCCTGGTG
GATGGCAGGGTGGTCCGTATGCGTATTGTCAAACCACGGAGATCTTCAGA
GGCCACAGAAGTAGCTGGTATACCTTCACCTTTCCCCCCCCCATGTTTTT
GAGTTCGTGAATACATACAACCTCACCCACCAGTGTGATGCGTGATAACA
CCCCGGGTGCATGCTATTAGGGAGTGTGGAGACACAGTCAATGTCAGACT
ATTCAAGTAAATGGTTTTTGATGATCAATGCTCATATTGCAGGTATGAAA
AAGCGATTTCATGAATATCAATACAAGGTATGCTTCCACGTAAATGTACT
TGCTTACGCATGTACGTACGTGATACAGACAGGACAGGGATAGTCAGTCA
GTACAGTTAGCCGTGCTGGATAGCTAACTAACGGGTTCAAATGCACGGGG
TATAAAAATGAGGTCGGTGCGTGGGGGTGGGCGTCTTATGCTGAACACTT
GGCTTCAGCACTCAGTAGCCAAAAACACAAATAACACATGCGGGCCGCGC
TGAGGTTTACGTTGCCTCCATTTGCTAACCCATCAGCAAGCTTTGAAACA
GCACAAGACGGGCGTTCCGTGAATCTCTTTGCTGTGTCGGATTTTGTTTC
TTCCGTTCAACATGACATCCTTCGCAAATGATTGGAATCCGCCGATCTAA
AGGAACTCTGGGGTGAAAGGAAGATACCTTTTGTTTTTTGCAGAGGTTTT
GTGGCAACGCATGGCATCGACCTCGGTATTCGGTACACATTTTCAGCATG
ATCGGAAAACATGACCACCGCACACACGGACCTACCCCCGAACGGATAGG
GTAGCTCCTGAACTGAGCATGACTGGAAGTCTAGTCAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3108:3550..11640-

>mRNA_H-paniculata_contig3108.8405.1 ID=mRNA_H-paniculata_contig3108.8405.1|Name=mRNA_H-paniculata_contig3108.8405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig3108:3550..11640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTAGGGGCAGGGGTAAGGGTAAGCGCGGTGGGCGAGGAGGTGGGGG
GAGACAGCACTTTGTTTCGTCTCTCGAAGAGCTTGAGTCTCGCAATGATC
GGGATGAAGCATGGGCGGCGCGGCGAAAGGCCGAACGCGATGCCGACAAC
TCTGAAGAGGGGAGCAGCAGCAGCGGCGGCGAAGATGGGTAGGGGCAGGG
GTAAGGGTAAGCGCGGTGGGCGAGGAGGTGGGGGGAGACAGCACTTTGTT
TCGTCTCTCGAAGAGCTTGAGTCTCGCAATGATCGGGATGAAGCATGGGC
GGCGCGGCGAAAGGCCGAACGCGATGCCGACAACTCTGAAGAGGGGAGCA
GCAGCAGCGGCGGCGAAGGCGAGGAGGATGATGGCAGTGGTAGCGACGCT
GAAACCCCAGGGGCGGGTGTAAAGGAAAGTCAAGGGAGCGACTCGGCAGC
AGACGTAGCGGGAGCTACGGCGGGCATCGGTGAGATGGAGCTCGAGCGGA
AGCCTGCGAAGCCGAAGGGTGTGGCGGCGCTGATCGAGGTCGAAAACCCT
AACGCAAAGCCTAAGGCGGTCAGGATGATGAAGGCGAAGGCGAGGAGGAT
GATGGCAGTGGTAGCGACGCTGAAACCCCAGGGGCGGGTGTAAAGGAAAG
TCAAGGGAGCGACTCGGCAGCAGACGTAGCGGGAGCTACGGCGGGCATCG
GTGAGATGGAGCTCGAGCGGAAGCCTGCGAAGCCGAAGGGTGTGGCGGCG
CTGATCGAGGTCGAAAACCCTAACGCAAAGCCTAAGGCGGTCAGGATGAT
GAAGGCGAAGGACATGGACATGGCTGCCGCTCCAGCAGAGCTGACGCGGC
GTGAGCGCGAAGCGATAGAGGCTCAACGTAAGAAGGATAACTACATGAAG
CTTCATGCCGAAGGAAAAACAGATGAGGCAAAGGACATGGACATGGCTGC
CGCTCCAGCAGAGCTGACGCGGCGTGAGCGCGAAGCGATAGAGGCTCAAC
GTAAGAAGGATAACTACATGAAGCTTCATGCCGAAGGAAAAACAGATGAG
GCAAAGGTTGATATGGTGCGGCTCGCCGCGGTGCGGAAGCGTCGAGAGGA
GGCCGAGAAACGAAAGGCCGAAGAGCAAGCCGAAGAGGCCGCTACTAAGG
AAAAAATGGAAAAGGCAGTCAAGAGTGCTGCTGTGGCCGCAGGTCCAAAG
AAGCTCAACCCTTTGGAGGTTGATATGGTGCGGCTCGCCGCGGTGCGGAA
GCGTCGAGAGGAGGCCGAGAAACGAAAGGCCGAAGAGCAAGCCGAAGAGG
CCGCTACTAAGGAAAAAATGGAAAAGGCAGTCAAGAGTGCTGCTGTGGCC
GCAGGTCCAAAGAAGCTCAACCCTTTGGAGGTGAAGAAGATGAATCCAGC
GAGACTTAAGGAGCTACTCAAGGAGCGTGAGCAGAGCTTGCAGGGAAGCA
AGAAAGATCTCATCGCCCGACTATTGGAGTGGGAAAAATCAAACCAAGCA
TAGGTGAAGAAGATGAATCCAGCGAGACTTAAGGAGCTACTCAAGGAGCG
TGAGCAGAGCTTGCAGGGAAGCAAGAAAGATCTCATCGCCCGACTATTGG
AGTGGGAAAAATCAAACCAAGCATAG
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