mRNA_H-paniculata_contig31013.8387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31013.8387.1
Unique NamemRNA_H-paniculata_contig31013.8387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A6H5JH19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 7.640e-38
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    4 WLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            WLYGMVML+EYFALIFVR+R SIVFFSR A LSF+AFH+YFYHFQ G+F LAA S F GMF+V++YVLQ++ELPA+ SGE+S D PRAH+VELP
Sbjct:  525 WLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFFGLAAWSSFLGMFSVKLYVLQAIELPAYTSGEVSQDAPRAHFVELP 618          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A7S3Y6C3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6C3_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 3.520e-21
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    4 WLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            WL+G +MLWEY+ ++F+RSRG  +FF R   L F+ +H+YFY F  GYF+L A + F  M    ++ LQ LE PA + GE+S   PRA Y ELP
Sbjct:  176 WLFGSMMLWEYYGMLFLRSRGGSLFFPRLCGLYFVGYHLYFYSFNYGYFDLLALAHFCLMLHAMLFTLQHLEAPALLRGEVSPAAPRAVYTELP 269          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A7S4DCY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCY7_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 1.450e-20
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    4 WLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            WL+G +MLWEY+ ++F+RSRG  +FF R   L F+ +H+YFY F  GYF+L A + F  M    ++ LQ LE PA + GE+S   PRA Y ELP
Sbjct:  364 WLFGSMMLWEYYGMLFLRSRGGSLFFPRLCGLYFVGYHLYFYSFNYGYFDLLALAHFCLMLHAMLFTLQHLEAPALLRGEVSPAAPRAVYTELP 457          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A835YR56_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR56_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.000e-20
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    7 LYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            L+GM++LWEY+ L+FVRS   I FF R  ML F A+H+YF+    GYF LAA S F  +    +Y +  LE+PA   GEIS + PRA +VELP
Sbjct:  123 LFGMMLLWEYYCLVFVRSAAGIAFFPRVTMLYFTAYHMYFFMNPMGYFGLAALSTFLLVLHAMLYTVTDLEVPALTRGEISAEHPRACFVELP 215          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A7S2AJJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJJ9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-15
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 MWLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            +W+YG+VM+WEY+++I++RS  +I F  R  ++ F+AFH Y Y    G++ +A  + F  M    ++ L  LE+PA    E+S DQPRA Y  LP
Sbjct:  168 LWIYGIVMIWEYYSMIYLRSAAAIYFLPRFTLVYFIAFHFYLYGTAYGFYPVALLTMFLAMCHSLVFCLTRLEVPASSRLEVSFDQPRALYTALP 262          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A7S2SN08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SN08_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.210e-13
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    7 LYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            ++G+VM+ EYF++IF RS  +I FF R  M  ++AFH+YFY    G+  +A  + +A      +Y L+  E+ AF  G +S +QPR+ Y E+P
Sbjct:  370 IFGLVMICEYFSMIFARSLLTIQFFPRVMMFYYIAFHLYFYLVPYGFTSMATITWYAACLHAMVYCLRYHEVKAFQRGRVSFEQPRSLYSEIP 462          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A7S0XCD7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCD7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.580e-11
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 MWLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            +W++ ++ML EY+++I++RSRGSI+ F R  + +++ +HIY Y    G+  LA    F  M    I+ ++  ELPA+ SG +S D PR  +  +P
Sbjct:  255 LWIFAIMMLLEYYSMIYLRSRGSIILFPRVILSTYMIYHIYVYLHPNGFHLLALLVMFMFMAWNMIFCVRKFELPAYSSGHVSIDAPRVLHNRVP 349          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A7S1UFL8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFL8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.440e-11
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 MWLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            +WL+ ++M+ EY++++F+RS+ +I F  R  MLS L +H+Y Y F  G++        +    V +Y    LE  A +SGE+S +QPR  +V LP
Sbjct:  256 LWLFALIMVLEYYSMVFLRSKAAIGFAPRMLMLSLLCYHLYIYSFPFGFYRPVLLLLTSVCVNVCLYCCVHLERQAVISGEVSFEQPRGAFVRLP 350          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A7R9YBE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBE7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.650e-10
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    1 MWLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP 285
            +WL+ +VM+ EY++++F+RS+ +I F  R  M   L +H+Y Y F AG+F                     LE  A +SGE+S +QPR  +  LP
Sbjct:   24 LWLFALVMVLEYYSMVFLRSKAAIGFTPRMLMGCLLCYHLYIYSFPAGFFXXXXXXXXXXXXXXXXXSCFRLEKAALLSGEVSFEQPRGAFFRLP 118          
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Match: A0A482SMB9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMB9_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 MWLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYFEL-AACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPR 264
            ++LY ++MLWEYF++I++RS  SI  F R  +  FL FH+Y+Y +  G+  L  AC   A +  + +  ++  E  AF  G++S +QPR
Sbjct:   71 LYLYAIMMLWEYFSMIYMRSVSSIRLFPRITLAFFLVFHVYYYSYPMGFHMLFLACIALASVVCM-VQCIRVFETRAFRLGKVSIEQPR 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31013.8387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JH19_9PHAE7.640e-3874.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y6C3_HETAK3.520e-2148.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DCY7_HETAK1.450e-2048.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YR56_9STRA5.000e-2050.54Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2AJJ9_9STRA1.570e-1541.05Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2SN08_9STRA6.210e-1339.78Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S0XCD7_9STRA2.580e-1136.84Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A7S1UFL8_9STRA3.440e-1136.84Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YBE7_9STRA9.650e-1034.74Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A482SMB9_9ARCH1.170e-938.20Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31013contigH-paniculata_contig31013:466..750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.2e-12
Seed eggNOG ortholog35128.Thaps20868
Preferred nameTMEM259
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGs2XG4I@2836,KOG2092@1,KOG2092@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929953.853232-CDS-H-paniculata_contig31013:465..7501622929953.853232-CDS-H-paniculata_contig31013:465..750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31013 466..750 +
1691481084.7622695-CDS-H-paniculata_contig31013:465..7501691481084.7622695-CDS-H-paniculata_contig31013:465..750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31013 466..750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31013.8387.1prot_H-paniculata_contig31013.8387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31013 466..750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31013.8387.1

>prot_H-paniculata_contig31013.8387.1 ID=prot_H-paniculata_contig31013.8387.1|Name=mRNA_H-paniculata_contig31013.8387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MWLYGMVMLWEYFALIFVRSRGSIVFFSRAAMLSFLAFHIYFYHFQAGYF
ELAACSCFAGMFAVEIYVLQSLELPAFMSGEISHDQPRAHYVELP
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mRNA from alignment at H-paniculata_contig31013:466..750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31013.8387.1 ID=mRNA_H-paniculata_contig31013.8387.1|Name=mRNA_H-paniculata_contig31013.8387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig31013:466..750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTTGTACGGCATGGTGATGCTGTGGGAGTACTTCGCTCTGATCTT CGTGAGGTCAAGGGGCAGCATCGTTTTTTTTTCGCGAGCGGCCATGCTGT CCTTTCTCGCCTTCCACATCTATTTTTATCATTTCCAGGCCGGCTATTTC GAGCTCGCGGCCTGTTCCTGCTTCGCTGGCATGTTTGCCGTGGAGATTTA CGTGCTGCAGTCGCTTGAGCTGCCGGCGTTCATGAGCGGGGAAATATCGC ACGATCAGCCCCGCGCGCACTATGTCGAATTGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig31013:466..750+

>mRNA_H-paniculata_contig31013.8387.1 ID=mRNA_H-paniculata_contig31013.8387.1|Name=mRNA_H-paniculata_contig31013.8387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig31013:466..750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTTGTACGGCATGGTGATGCTGTGGGAGTACTTCGCTCTGATCTT
CGTGAGGTCAAGGGGCAGCATCGTTTTTTTTTCGCGAGCGGCCATGCTGT
CCTTTCTCGCCTTCCACATCTATTTTTATCATTTCCAGGCCGGCTATTTC
GAGCTCGCGGCCTGTTCCTGCTTCGCTGGCATGTTTGCCGTGGAGATTTA
CGTGCTGCAGTCGCTTGAGCTGCCGGCGTTCATGAGCGGGGAAATATCGC
ACGATCAGCCCCGCGCGCACTATGTCGAATTGCCCATGTGGTTGTACGGC
ATGGTGATGCTGTGGGAGTACTTCGCTCTGATCTTCGTGAGGTCAAGGGG
CAGCATCGTTTTTTTTTCGCGAGCGGCCATGCTGTCCTTTCTCGCCTTCC
ACATCTATTTTTATCATTTCCAGGCCGGCTATTTCGAGCTCGCGGCCTGT
TCCTGCTTCGCTGGCATGTTTGCCGTGGAGATTTACGTGCTGCAGTCGCT
TGAGCTGCCGGCGTTCATGAGCGGGGAAATATCGCACGATCAGCCCCGCG
CGCACTATGTCGAATTGCCC
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