mRNA_H-paniculata_contig30942.8368.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30942.8368.1
Unique NamemRNA_H-paniculata_contig30942.8368.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.630e-29
Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
            GCSTAK     +P  T  RA    +R++VDL G  RV SL G  Y +I+ +DY+R+  V F+K K DA    + Y+AE        ++   R+DNGGEF +G+F     ++ I  E  P   P+Y+GVAE  LGL+++  +A  +Q  T          LWAEA+ ++C+  N + T+S     +  E W+G         PF +   + K+   H   P+ +KC  L    N      R+LN     I  R
Sbjct:  710 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 960          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.640e-29
Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
            GCSTAK     +P  T  RA    +R++VDL G  RV SL G  Y +I+ +DY+R+  V F+K K DA    + Y+AE        ++   R+DNGGEF +G+F     ++ I  E  P   P+Y+GVAE  LGL+++  +A  +Q  T          LWAEA+ ++C+  N + T+S     +  E W+G         PF +   + K+   H   P+ +KC  L    N      R+LN     I  R
Sbjct:  545 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 795          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.650e-29
Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
            GCSTAK     +P  T  RA    +R++VDL G  RV SL G  Y +I+ +DY+R+  V F+K K DA    + Y+AE        ++   R+DNGGEF +G+F     ++ I  E  P   P+Y+GVAE  LGL+++  +A  +Q  T          LWAEA+ ++C+  N + T+S     +  E W+G         PF +   + K+   H   P+ +KC  L    N      R+LN     I  R
Sbjct:  558 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 808          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.250e-29
Identity = 84/252 (33.33%), Postives = 124/252 (49.21%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
            GCSTAK     +P  T  RA    +R++VDL G  RV SL G  Y +I+ +DY+R+  V F+K K DA    + Y+AE        ++   R+DNGGEF +G+F     ++ I  E  P   P+Y+GVAE  LGL+++  +A  +Q  T          LWAEA+ ++C+  N + T+S     +  E W+G         PF +   + K+   H   P+ +KC  L    N      R+LN     I  R
Sbjct:  701 GCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNDKRRAITTR 951          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.090e-27
Identity = 82/252 (32.54%), Postives = 120/252 (47.62%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKG-LNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
            GCSTAK     +P  T  RA    +R +V+L G  R  SL G  Y +I+ +DY+R+  V F+K K DA    + Y+ E        ++   R+DNGGEF +G+F     ++ I  E  P   P+Y+GVAE  LGL+++  IA  +Q  T          LWAEA+ ++C+  N + T+S     +  E W+G         PF +   + K+   H   P  +KC  L    N      R+LN     I  R
Sbjct:  343 GCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPTAQKCFYLGPGINTNRDCVRILNEKRRAITTR 593          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.860e-27
Identity = 81/252 (32.14%), Postives = 122/252 (48.41%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
            GCSTAK     +P  T  RA    +R+++DL G  RV SL G  Y +I+ + Y+R+  V F+K K DA    + Y+AE        ++   R+DNGGEF +G+F     ++ I  E  P   P+Y+GVAE  LGL+++  +A  +Q  T           WAEA+ + C+  N + T+S     +  E W+G         PF +   + K+   H   P+ +KC  L    N      R+LN   + I  R
Sbjct:  571 GCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRQAITTR 821          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 119 bits (299), Expect = 5.330e-27
Identity = 76/250 (30.40%), Postives = 131/250 (52.40%), Query Frame = 1
Query:    7 CSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKGLNIGATRTDNGGEFD-GDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIALMQNQTEGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVERQHVSW 753
            C   K  +   PK    RAT   + ++ D+ G M  TSL+GS Y ++ ++DY+R   V F+KKK D  A    +        GL +   R+DNG E+  G+F    ++ GI H+L  P  PQ +GV+E +   + E    L+  +  G  +  WAEA+N +  + N+  T +++GN T  E W+G T  +EHL+ FG V Y      + + + + K  + + + ++  S+ +R+ N  T++I+  ++V +
Sbjct:  433 CQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEK--GLPKTFWAEAVNTSVYLLNLLPTKALKGN-TPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQ-KSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKF 678          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.310e-26
Identity = 80/252 (31.75%), Postives = 123/252 (48.81%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEY-ITPKGLNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIAL-MQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVER 738
            GCSTAK     +P  T   A    +R++VDL G +RV SL G  Y +I+ +DY+R+  V F+K K DA    + Y+AE        ++   R+DNGGEF +G+F     ++ I  E  P   P+++GVAE  LG +++  +A  +Q  T          LWA+A+ ++C+  N + T+S     +  E W+G         PF +   + K+   H   P+ +KC  L    N      R+LN     I  R
Sbjct:  546 GCSTAKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHIPEHNGVAERALGPIKDAALAARIQAPTLYPGAPNYPSLWAKAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTR 796          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A6H5K2B9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.130e-24
Identity = 81/259 (31.27%), Postives = 123/259 (47.49%), Query Frame = 1
Query:    4 GCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKG-LNIGATRTDNGGEF-DGDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLRE-KTIALMQNQT----EGGSEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVERQHVSWHP 759
            G STAK     +P  T  RA    +R++VDL G   V S  G  Y +I+ + Y+R+  V F+K K DA    + Y+AE        ++   R+DNGGEF +G+F     ++ I  E  P   P+Y+GVAE  LGL+++ + +A +   T          LWAEA+ ++C+  N + T+S     +  E W+G   +     PF +   + K    H   P  +KC  L    N      R+LN   + I  R   +W P
Sbjct:  317 GRSTAKGLSKPIPNETSTRAVKKLQRVFVDLSGKAGVQSFGGKWYTLIVKDGYTRWSHVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERVLGLIKDAELVARIHAPTLYSGPPNYPSLWAEAIAWSCNSLNCTSTTSNPEKKSPYEIWHGHPPLPGATYPF-LKPAVYKDKGTHKSEPTAQKCFYLGPGTNTNRDFVRILNEKRQAITTRN-FTWQP 573          
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA)

HSP 1 Score: 111 bits (278), Expect = 3.330e-24
Identity = 80/252 (31.75%), Postives = 129/252 (51.19%), Query Frame = 1
Query:    7 CSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMIIVNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKGLNIGATRTDNGGEFDGDFHLKL-DEHGISHELAPPDRPQYSGVAEMRLGLLREKTIALMQNQTEGGS--EKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMVGYMRKIITEHNMVPRGKKCITLSIF--HNHPSRTFRVLNVNTEQIVERQHV 747
            C+  K  R    K+ D ++T   + +++DL G M+V S+ G  YV ++V+DYSR+  V FI+ K D  A+ + +  + IT KG ++   R+D+GGEF      K  +E GI+H+ + P  PQ +GV E +   L+E   A++     GG+   K WAEA+N  C I N        G  T  E W G T  L + + FG   +   I+ + + + +        IF  ++  S  FRV N  ++ ++E  +V
Sbjct:  517 CNQGKQIRVQHKKVPDIQSTSVLDLVHMDLMGPMQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKG-SLKCIRSDHGGEFQNKVMTKFCNEQGIAHQFSAPRTPQMNGVVERKNRTLQEMAQAMIH----GGNIPVKFWAEAINTACYIINRVYMRKALGK-TPYELWKGKTPNLSYFRVFGCRCF---ILNDKDQLGKFDSRSDEGIFLGYSGNSSAFRVFNFQSKMVMESVNV 759          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30942.8368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTI6_9PHAE1.630e-2933.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.640e-2933.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.650e-2933.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.250e-2933.33Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K1N9_9PHAE2.090e-2732.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXF7_9PHAE2.860e-2732.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T355_CAJCA5.330e-2730.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5L3E0_9PHAE2.310e-2631.75Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2B9_9PHAE2.130e-2431.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A1J3ITQ9_NOCCA3.330e-2431.75Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30942contigH-paniculata_contig30942:1612..2373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score111.3
Seed ortholog evalue6.6e-22
Seed eggNOG ortholog28532.XP_010520710.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37SNQ@33090,3GHRQ@35493,3HVU8@3699,COG2801@1,KOG0017@2759,KOG1334@1,KOG1334@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.5615208-CDS-H-paniculata_contig30942:1611..23731622929950.5615208-CDS-H-paniculata_contig30942:1611..2373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30942 1612..2373 +
1691481083.0283446-CDS-H-paniculata_contig30942:1611..23731691481083.0283446-CDS-H-paniculata_contig30942:1611..2373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30942 1612..2373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30942.8368.1prot_H-paniculata_contig30942.8368.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30942 1612..2373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30942.8368.1

>prot_H-paniculata_contig30942.8368.1 ID=prot_H-paniculata_contig30942.8368.1|Name=mRNA_H-paniculata_contig30942.8368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
KGCSTAKAHRFAVPKMTDKRATYAAERLYVDLGGLMRVTSLDGSSYVMII
VNDYSRFQAVEFIKKKIDATATIQSYIAEYITPKGLNIGATRTDNGGEFD
GDFHLKLDEHGISHELAPPDRPQYSGVAEMRLGLLREKTIALMQNQTEGG
SEKLWAEAMNYTCDITNISCTSSIEGNVTTCEKWYGTTTMLEHLQPFGMV
GYMRKIITEHNMVPRGKKCITLSIFHNHPSRTFRVLNVNTEQIVERQHVS
WHPE
back to top

mRNA from alignment at H-paniculata_contig30942:1612..2373+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30942.8368.1 ID=mRNA_H-paniculata_contig30942.8368.1|Name=mRNA_H-paniculata_contig30942.8368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at H-paniculata_contig30942:1612..2373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGATGCTCCACTGCCAAGGCTCACCGATTCGCCGTTCCAAAAATGAC CGACAAGCGAGCCACATATGCAGCGGAGCGCCTATACGTCGACCTGGGCG GACTCATGCGAGTAACTAGCTTGGACGGTAGCTCGTATGTGATGATCATC GTCAACGATTACTCGCGGTTCCAGGCCGTCGAGTTCATCAAGAAGAAGAT CGACGCCACTGCAACTATCCAGAGCTACATTGCCGAATACATCACGCCGA AGGGACTCAACATCGGCGCCACTCGCACGGACAACGGTGGGGAGTTCGAC GGCGATTTCCACCTCAAGCTAGACGAGCACGGCATTAGTCACGAGCTCGC ACCCCCAGACAGGCCGCAATACAGCGGCGTTGCCGAAATGCGGCTGGGTC TACTCCGCGAGAAAACGATCGCGTTGATGCAGAATCAGACGGAGGGGGGC AGCGAGAAACTATGGGCGGAGGCGATGAACTACACCTGCGACATCACCAA CATAAGCTGCACTTCGTCCATCGAAGGAAACGTCACCACGTGCGAGAAGT GGTACGGGACGACAACGATGCTGGAACACCTACAACCTTTTGGGATGGTG GGCTACATGCGCAAGATCATCACAGAGCACAATATGGTGCCACGCGGAAA AAAGTGCATCACGCTGAGTATCTTCCACAACCACCCCAGCAGAACTTTCC GCGTTCTTAACGTCAACACAGAACAGATCGTGGAACGTCAGCACGTGTCA TGGCACCCTGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30942:1612..2373+

>mRNA_H-paniculata_contig30942.8368.1 ID=mRNA_H-paniculata_contig30942.8368.1|Name=mRNA_H-paniculata_contig30942.8368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig30942:1612..2373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGATGCTCCACTGCCAAGGCTCACCGATTCGCCGTTCCAAAAATGAC
CGACAAGCGAGCCACATATGCAGCGGAGCGCCTATACGTCGACCTGGGCG
GACTCATGCGAGTAACTAGCTTGGACGGTAGCTCGTATGTGATGATCATC
GTCAACGATTACTCGCGGTTCCAGGCCGTCGAGTTCATCAAGAAGAAGAT
CGACGCCACTGCAACTATCCAGAGCTACATTGCCGAATACATCACGCCGA
AGGGACTCAACATCGGCGCCACTCGCACGGACAACGGTGGGGAGTTCGAC
GGCGATTTCCACCTCAAGCTAGACGAGCACGGCATTAGTCACGAGCTCGC
ACCCCCAGACAGGCCGCAATACAGCGGCGTTGCCGAAATGCGGCTGGGTC
TACTCCGCGAGAAAACGATCGCGTTGATGCAGAATCAGACGGAGGGGGGC
AGCGAGAAACTATGGGCGGAGGCGATGAACTACACCTGCGACATCACCAA
CATAAGCTGCACTTCGTCCATCGAAGGAAACGTCACCACGTGCGAGAAGT
GGTACGGGACGACAACGATGCTGGAACACCTACAACCTTTTGGGATGGTG
GGCTACATGCGCAAGATCATCACAGAGCACAATATGGTGCCACGCGGAAA
AAAGTGCATCACGCTGAGTATCTTCCACAACCACCCCAGCAGAACTTTCC
GCGTTCTTAACGTCAACACAGAACAGATCGTGGAACGTCAGCACGTGTCA
TGGCACCCTGAGAAAGGATGCTCCACTGCCAAGGCTCACCGATTCGCCGT
TCCAAAAATGACCGACAAGCGAGCCACATATGCAGCGGAGCGCCTATACG
TCGACCTGGGCGGACTCATGCGAGTAACTAGCTTGGACGGTAGCTCGTAT
GTGATGATCATCGTCAACGATTACTCGCGGTTCCAGGCCGTCGAGTTCAT
CAAGAAGAAGATCGACGCCACTGCAACTATCCAGAGCTACATTGCCGAAT
ACATCACGCCGAAGGGACTCAACATCGGCGCCACTCGCACGGACAACGGT
GGGGAGTTCGACGGCGATTTCCACCTCAAGCTAGACGAGCACGGCATTAG
TCACGAGCTCGCACCCCCAGACAGGCCGCAATACAGCGGCGTTGCCGAAA
TGCGGCTGGGTCTACTCCGCGAGAAAACGATCGCGTTGATGCAGAATCAG
ACGGAGGGGGGCAGCGAGAAACTATGGGCGGAGGCGATGAACTACACCTG
CGACATCACCAACATAAGCTGCACTTCGTCCATCGAAGGAAACGTCACCA
CGTGCGAGAAGTGGTACGGGACGACAACGATGCTGGAACACCTACAACCT
TTTGGGATGGTGGGCTACATGCGCAAGATCATCACAGAGCACAATATGGT
GCCACGCGGAAAAAAGTGCATCACGCTGAGTATCTTCCACAACCACCCCA
GCAGAACTTTCCGCGTTCTTAACGTCAACACAGAACAGATCGTGGAACGT
CAGCACGTGTCATGGCACCCTGAG
back to top