mRNA_H-paniculata_contig30940.8367.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30940.8367.1
Unique NamemRNA_H-paniculata_contig30940.8367.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30940.8367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30940contigH-paniculata_contig30940:279..1336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size393
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30940.8367.1prot_H-paniculata_contig30940.8367.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30940 279..1336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.4838855-CDS-H-paniculata_contig30940:278..4621622929950.4838855-CDS-H-paniculata_contig30940:278..462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30940 279..462 +
1691481082.9858491-CDS-H-paniculata_contig30940:278..4621691481082.9858491-CDS-H-paniculata_contig30940:278..462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30940 279..462 +
1622929950.496289-CDS-H-paniculata_contig30940:753..8291622929950.496289-CDS-H-paniculata_contig30940:753..829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30940 754..829 +
1691481082.9966104-CDS-H-paniculata_contig30940:753..8291691481082.9966104-CDS-H-paniculata_contig30940:753..829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30940 754..829 +
1622929950.5105364-CDS-H-paniculata_contig30940:1203..13361622929950.5105364-CDS-H-paniculata_contig30940:1203..1336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30940 1204..1336 +
1691481083.0146933-CDS-H-paniculata_contig30940:1203..13361691481083.0146933-CDS-H-paniculata_contig30940:1203..1336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30940 1204..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30940.8367.1

>prot_H-paniculata_contig30940.8367.1 ID=prot_H-paniculata_contig30940.8367.1|Name=mRNA_H-paniculata_contig30940.8367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
SGTSSTPSLSSTGDRKRANVGPKADDHRTASEVGEGLQSATPLTTTPATA
SSTSMTSPSPPEPFPEIPPHLRKYCVRHETLPARPPSGTSSTPSHSSTGD
RKRANVGPKADGHRTSSEVGEGLQSATPLTT
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mRNA from alignment at H-paniculata_contig30940:279..1336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30940.8367.1 ID=mRNA_H-paniculata_contig30940.8367.1|Name=mRNA_H-paniculata_contig30940.8367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-paniculata_contig30940:279..1336+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGACCTCGTCGACTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCG
GGCAAATGTTGGTCCCAAGGCCGACGATCACCGGACGGCGAGCGAGGTCG
GCGAGGGTCTCCAGTCGGCGACTCCTCTCACCACCACGCCGGCAACCGCG
AGCAGCACCTCCATGACCTCTCCATCACCGCCAGGTGCGTAGGGAACCGC
CAGCGTTATTCGCAATCGACGCGTCAACAACGTGCAGCATATCCCGAACA
AAGATGTAGTAACAGTGTCGGGCCATCGTCGTGCAGTGGCTCTAGGCGTT
TGCGCTCCGACGTCGTTGCATGTATATACACGTAGAAACGTCGCACACAC
TCACGATATGCCTCAAGTCGTTATGATTAATAGTCGTATCCTCGCTTTTC
CCCCGCCGCCTCGCCGCCCCGCCCCCGTCGTCTCGCCCGTCTTTGGACAA
CTGACACGCCTCCACCTTTCTTTAGAGCCCTTCCCCGAGATTCCGCCTCA
CCTCCGCAAATACTGCGTGAGGCACGAGACCCTCCCAGCACGGCCACCTA
GGTAAGGTTACTCGGTGATGTAAGAACGGTGTGGTATAAGGCGAATTTCC
CGCTCGGACTCCGGTACATGCTGGTTCGTCGTGTCGCGTTCGAGCGGTGC
CGTCTAGTAGGGCGAAGATAGTGACAAATGCAGTATCTCTCCGACGAACG
AACAAGAGAGAGTGAACCCAATATCCTGTGTGGATTTACCGTCCGGACGT
CAGGTGGTAGGGAGTCCCGAAGCGAGACACGGCAGAATAATATAGGACGG
AAATCGCAGATACCGTGTGTCCCTCTAAATTCCCGGACGCAAGACCCAAT
ATCACCCGTATACCCCCGCTCTCGTTGCTGTCCGATTTTCCGTAAATGTT
TCATACACTCGCTATCCAACGTCAGCGGGACCTCGTCGACTCCGAGTCAC
TCGTCGACGGGGGACCGCAAGCGGGCAAATGTTGGTCCCAAGGCCGACGG
TCACCGGACGTCGAGCGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTC
TCACCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig30940:279..1336+

>mRNA_H-paniculata_contig30940.8367.1 ID=mRNA_H-paniculata_contig30940.8367.1|Name=mRNA_H-paniculata_contig30940.8367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig30940:279..1336+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGACCTCGTCGACTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCG
GGCAAATGTTGGTCCCAAGGCCGACGATCACCGGACGGCGAGCGAGGTCG
GCGAGGGTCTCCAGTCGGCGACTCCTCTCACCACCACGCCGGCAACCGCG
AGCAGCACCTCCATGACCTCTCCATCACCGCCAGAGCGGGACCTCGTCGA
CTCCGAGTCTTTCGTCGACGGGGGACCGCAAGCGGGCAAATGTTGGTCCC
AAGGCCGACGATCACCGGACGGCGAGCGAGGTCGGCGAGGGTCTCCAGTC
GGCGACTCCTCTCACCACCACGCCGGCAACCGCGAGCAGCACCTCCATGA
CCTCTCCATCACCGCCAGAGCCCTTCCCCGAGATTCCGCCTCACCTCCGC
AAATACTGCGTGAGGCACGAGACCCTCCCAGCACGGCCACCTAGAGCCCT
TCCCCGAGATTCCGCCTCACCTCCGCAAATACTGCGTGAGGCACGAGACC
CTCCCAGCACGGCCACCTAGCGGGACCTCGTCGACTCCGAGTCACTCGTC
GACGGGGGACCGCAAGCGGGCAAATGTTGGTCCCAAGGCCGACGGTCACC
GGACGTCGAGCGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACC
ACCCGGGACCTCGTCGACTCCGAGTCACTCGTCGACGGGGGACCGCAAGC
GGGCAAATGTTGGTCCCAAGGCCGACGGTCACCGGACGTCGAGCGAGGTC
GGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCACC
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