prot_H-paniculata_contig3081.8348.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3081.8348.1
Unique Nameprot_H-paniculata_contig3081.8348.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length345
Homology
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BLAST of mRNA_H-paniculata_contig3081.8348.1 vs. uniprot
Match: D7FM67_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM67_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.160e-19
Identity = 117/356 (32.87%), Postives = 159/356 (44.66%), Query Frame = 0 
Query:    8 SLPLVAVVLAMCTHCDHAFVVPVGRATTRHLARTRS------SLSRVEAHPGERTQGILKRERMARRASMMASPAEETAATTGVGTARGAGEPVTRLGRISKRLRKMIRKAIMGYLPEEEAXXXXXXXXXXAA--RRLAQTQVRDQRLIKDAARARAAAEEVVAAA---------HGEP---VAAPDMVQLEIGGTSPLEAEDVTASLRKRMEEMNQSPQGVVEGTALPEAVEEVDRPEETEMERTRREIQXXXXXXXXXXXXXXXXXXXXXXXXXXXLQSLRGQVPGGRPASFDGDTAVAELPNPKDRGIQSGSSRPSGSASPTPQKKADTPKLASSEQIQRLERMFGSSGGEIL 343
            S+  +AV++A+    D  FV PV   T   + R         S +RV+     R Q  L+R+     ASM A+P  +   + G+    GA +   RL RIS R+RK+IR+A+MGYLPEEE           AA  +   + ++ D+RL   +  A+AAA E V  +          GE    +A  D VQL IG  SP+E ED  ASLR R+E      QG+   TA  +A +                                         XXXX           RP SFDGDTAVAE P+       +  +R +      PQ   + PK+AS+E ++RL RMFGS GGE L
Sbjct:    7 SISFIAVLIAVFDGVD-GFVGPVPVGTRARVVRRAMATNGFHSTTRVQGRSLPRAQEPLRRQ-----ASMSAAP--DKMPSPGISGEEGAPQKGGRLSRISGRVRKIIRRAVMGYLPEEEVSYKQRAEEQEAAAAKLRGEPEIADERLRDASIAAKAAAIEAVEESFVQGSFTGNEGEEDDWLANNDFVQLNIGDESPMEIEDKLASLRNRLE------QGLPPDTAQEQAEK-----------------------------------------XXXXXXXXXXXXXXXRPPSFDGDTAVAERPS------SNLDARQANEGGMRPQAPKEAPKMASAEDVERLNRMFGSMGGEPL 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3081.8348.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM67_ECTSI1.160e-1932.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 244..267
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..344
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.683

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3081contigH-paniculata_contig3081:11722..17508 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3081.8348.1mRNA_H-paniculata_contig3081.8348.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3081 11503..18563 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3081.8348.1 ID=prot_H-paniculata_contig3081.8348.1|Name=mRNA_H-paniculata_contig3081.8348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=345bp
MVRVVGNSLPLVAVVLAMCTHCDHAFVVPVGRATTRHLARTRSSLSRVEA
HPGERTQGILKRERMARRASMMASPAEETAATTGVGTARGAGEPVTRLGR
ISKRLRKMIRKAIMGYLPEEEAASEAAKEAAAAARRLAQTQVRDQRLIKD
AARARAAAEEVVAAAHGEPVAAPDMVQLEIGGTSPLEAEDVTASLRKRME
EMNQSPQGVVEGTALPEAVEEVDRPEETEMERTRREIQARMQQRSLARRE
IQEKEALEKKAREERLQSLRGQVPGGRPASFDGDTAVAELPNPKDRGIQS
GSSRPSGSASPTPQKKADTPKLASSEQIQRLERMFGSSGGEILP*
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