prot_H-paniculata_contig3079.8340.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3079.8340.1
Unique Nameprot_H-paniculata_contig3079.8340.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length467
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3079.8340.1 vs. uniprot
Match: A0A6H5KRQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.060e-26
Identity = 147/416 (35.34%), Postives = 192/416 (46.15%), Query Frame = 0 
Query:   42 ALSHAGDCEYIASILSSLRRELRSHLQSAAGAAFAATLEGKFSGTFRRLASSXXXXXXXXXXXDALSAYVNALGAYLETEEACVRRLRERASSDESKLSAVADEMNQYEGLGMPSLAVGLRAEMEKISVNIREDRMAEHTMVEQARCEAIKLAESLSFNAAAASSSRASKGFRYEAPPVG-----RTSPFASGGGSG-AGSDRLR----GAXXXSENAVNDXXXXXXXXXXXXXXXXGAGVMELGMVEDRKLRRVWELFSFLGIGNKGEDIPIVVNVGASYGSNGDXXXXXXXXGVFVSEFSVATTAT---TAAVAAATSAAAPSXXXXXXXXXXXXTASDNATMAARESDPYSAPAGSVVEVAAGGPERTRGDEVTAPAKARKVPPSRIRGGVRLPSPSRDGGRSLGGHLNWLNN 444
            A+S+A +C+ I S+ S+LRR L S L SA        L G F G      S+            AL AY ++L AY ETE  CVRRLRERA +DE++++AV  E+ +YEGL MP+L  GLRA M+++   + EDR AEH ++ QAR +   L  +LS    A  S+R +      A   G          A+G GSG AG D  R     A    +                     GAG +E G      L RV ELF+ L +   GE+ P+ V           XXXXXXXX                 T   AA  +A  P+            T    A  +   + P+   AG + +    GP R +G+      + R   PSRIRGGVRLPSPSR GG SL G LNWL+N
Sbjct:  667 AVSYARECQNIPSVYSNLRRYLDSQLASA--------LNGVFPGGGGEAKSA-----------SALGAYTDSLQAYFETEAECVRRLRERARADEAEVAAVEKELVEYEGLDMPTLTTGLRARMQQLRNEVAEDREAEHAIMSQARHQFTVLESTLS----AYDSTRTTGCLVSAAEGCGGGGDXXXXXVAAGIGSGTAGLDYPRPPDVSAATVKKIPGTSAAASAAGGVSGANGRVGAGSLE-GSAAAAGLARVRELFALLEVVGSGEEEPLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGEAAGGAALPPAG-----------TRDSRAQSSGVAATPFGQ-AGELEDHQ--GPNRRQGNSHGNGGRPRNPAPSRIRGGVRLPSPSRGGGNSLQGRLNWLDN 1044
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3079.8340.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRQ1_9PHAE5.060e-2635.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3079contigH-paniculata_contig3079:13397..18120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3079.8340.1mRNA_H-paniculata_contig3079.8340.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3079 13397..18120 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3079.8340.1 ID=prot_H-paniculata_contig3079.8340.1|Name=mRNA_H-paniculata_contig3079.8340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=467bp
DSKIEAEQQRREQMLEQAKVTRAKYDAQRAAELDNLDRWENALSHAGDCE
YIASILSSLRRELRSHLQSAAGAAFAATLEGKFSGTFRRLASSSETTAAG
GGGGDALSAYVNALGAYLETEEACVRRLRERASSDESKLSAVADEMNQYE
GLGMPSLAVGLRAEMEKISVNIREDRMAEHTMVEQARCEAIKLAESLSFN
AAAASSSRASKGFRYEAPPVGRTSPFASGGGSGAGSDRLRGAGGGSENAV
NDGSGGGGVNGDVSGPNGGAGVMELGMVEDRKLRRVWELFSFLGIGNKGE
DIPIVVNVGASYGSNGDGGGGGGGRGVFVSEFSVATTATTAAVAAATSAA
APSAAAPTTAAPAAATASDNATMAARESDPYSAPAGSVVEVAAGGPERTR
GDEVTAPAKARKVPPSRIRGGVRLPSPSRDGGRSLGGHLNWLNNNNTSTT
NSTTSANTRSSSAGSAA
back to top