mRNA_H-paniculata_contig3077.8333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3077.8333.1
Unique NamemRNA_H-paniculata_contig3077.8333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 7.550e-80
Identity = 180/432 (41.67%), Postives = 230/432 (53.24%), Query Frame = 3
Query: 3087 PPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRAVVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAAFGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*---VCRKELYEAEGAEGSCDL*FPSTEDWKLFQFELELR*WCQQCRGSAGHSGVLSA*ISGKASGEC*DVDARSRVGFYLD-----------------------PIVHAHFSPDRNCSGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMKDMNE*VWKDKVMNSTMDAIE-VPDDQGFSAAGNKAIVEGDGVMLEESLDIAAE 4301
            PP +  RKA IRRFLVE   AL++E   +AVIV++DE F +QLHGSAYSYF TD+DGVVQDG G T+GKGL MIM+HAITK G L A++ N FPIPE +FKPK  GKG++G  ++ T+ TA MLWQAK +TGDYHDAMT+ MFMEWL+  LAPAF+A +G  KMILV         L      + Y  E     +  +G+         CRK   E E    +           K + F++       Q     G        +SG       +V   +R  F L                        P     F P           V+FNFKT R +A    Q RK WYG+ T E Q GGWK A CSKLV+HA +K+MN+ V  D V+   M A+E +P+     A G+  IV  DGV  +E L+++AE
Sbjct:  235 PPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEGWFKPKDKGKGRQGAGSMGTEETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILV---------LDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSA-------GVRSKKYTFQVPATGTFPQANSKCGKG------VSGP------EVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHA-VKEMNKWVASDPVLRGQMGALEEIPESYEDDAPGHNDIVHDDGVEAQEQLELSAE 637          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 5.480e-58
Identity = 105/167 (62.87%), Postives = 129/167 (77.25%), Query Frame = 3
Query: 3087 PPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRAVVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAAFGKNKMILV 3587
            PP +  RKA IRRFLVE   AL++E   +AVIV++DE F +QLHGSAYSYF TD++GVVQDG G T+GKGL MIM+HAITK G L A++ N FPIPE +FKPK  GKG++G  ++ T+ TA MLWQAK +TGDYHDAM + MFMEWL+  LAPAF+A +G  KMI V
Sbjct:  235 PPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEGWFKPKDKGKGRQGAGSMGTEETAEMLWQAKRATGDYHDAMKDKMFMEWLERRLAPAFKAKYGNKKMIFV 401          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.050e-52
Identity = 155/429 (36.13%), Postives = 204/429 (47.55%), Query Frame = 3
Query: 3087 PPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRA-----VVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAAFGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*VCRKELYEAEGAEGSCDL*FPSTEDWKLFQFELELR*WCQQCRGSAGHS----GVLSA*ISG------------KASGEC*DVDARSRVGFYLDPIVHAHFSPDRNCSGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMKDMNE*VWKDKV---MNSTMDAIEVPDDQGFSAAGNKAIVEGDGVMLEESLDIAAE 4301
            PP ++ RK  IR FLV+   A   E+AG AVIV+IDE F +Q HGSAYSYF +D+ GVVQDG G T GKGL MIM+HAITKHGPL  +   GFPI E +FK K N + KK K       +  + TA  LWQAK +TGDYH+AMT+GMFM+WLK+ L PAF+A F   KM LV              +++   DE+ K+         P    +K   E     G          + K  ++  E+       +GS  ++    GV    I+             K   +          G    P     F P           V+ +F+  RNI     Q R  WYG+   + Q GGWKAA C KLV HA  K M+E  W       ++ T+ ++E P  +   A     I +G     +E L   AE
Sbjct:  115 PPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYIDESFVHQAHGSAYSYFPSDDTGVVQDGIGRTTGKGLRMIMVHAITKHGPLAELQ-EGFPIREGWFKAKEN-RAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVL----------DNASYHHCFDEEVKV---------PETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEV-----PAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGK-MDE--WIGLYGGNLSGTIGSLEYPVAEYQEATAEDEIEDGVEEQTDEWLGEDAE 514          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.970e-51
Identity = 148/394 (37.56%), Postives = 195/394 (49.49%), Query Frame = 3
Query: 3084 NPPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRAVVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAA--FGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*VCRKELYEAEGAEGSCDL*FP-STEDWKLFQFELELR*WCQQCRGSAGHSGVLSA*ISGKASGEC*DVDARSRV-----------GFYL--DPIVHAHFSPDRNCSGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMKDMNE*VW-KDKVMNSTMDAIEVPD 4214
             PP +  R A IRRFLVE   A   E+AG AVIV++DE F +Q HGS YSYF +DEDGVVQDG G T GKGL MIM+HAITK GPL  +  +G PI E +FK   +GK     + +  + TA  LWQAK + GDYH AMT+ MFMEWL++ L+PA+ A   F   +MILV    +                +KH +            V RKE     G +G  +  F   TE    F               +    G +S      A+ E   ++   R+           G+ L   P     F P           V+ NF+  R +     Q RK WYG++    Q GGWKAA CSKLV HA + +MN+ V  +D V++ T+ ++E PD
Sbjct:  236 TPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKL-CDGLPIEEGWFKETGSGK-----KEMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKE-----GEQGVVEYNFEVPTEPGSSFP--------------AGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHA-IGEMNKWVKDRDGVLSGTIGSLEKPD 603          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.080e-51
Identity = 140/374 (37.43%), Postives = 182/374 (48.66%), Query Frame = 3
Query: 3087 PPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRA-----VVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAAFGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*VCRKELYEAEGAEGSCDL*FPSTEDWKLFQFELELR*WCQQCRGSAGHS----GVLSA*ISG------------KASGEC*DVDARSRVGFYLDPIVHAHFSPDRNCSGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMK 4145
            PP ++ RK  IR FLV+   A   E+AG AVIV++DE F +Q HGSAYSYF +D+ GVVQDG G T GKGL MIM+HAITKHGPL  +   GFPI E +FK K N + KK K       +  + TA  LWQAK +TGDYH+AMT+GMFM+WLK+ L PAF+A F   KM LV              +++   DE+ K+         P    +K   E     G          + K  ++  E+       +GS  ++    GV    I+             K   +          G    P     F P           V+ +F+  RN+     Q R  WYG+   + Q GGWKAA C KLV HA  K
Sbjct:  159 PPLNEERKNRIRLFLVKMDLAKGAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDTGVVQDGIGRTTGKGLRMIMVHAITKHGPLAELQ-EGFPIREGWFKAKEN-RAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVL----------DNASYHHCFDEEVKV---------PETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEV-----PAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGK 506          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 5.230e-50
Identity = 150/427 (35.13%), Postives = 203/427 (47.54%), Query Frame = 3
Query: 3087 PPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRA-----VVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAAFGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*VCRKELYEAEGAEGSCDL*FPSTEDWKLFQFELELR*WCQQCRGSAGHSGVLSA*ISG------------KASGEC*DVDARSRVGFYLDPIVHAHFSPDRNC--SGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMKDMNE*VWKDKV---MNSTMDAIEVPDDQGFSAAGNKAIVEGDGVMLEESLDIAAE 4301
            PP ++ RK  IR FLV+   A   E+AG AVIV++DE F +Q HGSAYSYF +D+ G+VQDG G T GKGL MIM+HAIT+HGPL  +   GFPI E +FK K N + KK K       +  + TA  LWQAK +TGDYH+AMT+GMFM+WLK+ L PAF+A F   KM LV              +++   DE+ K+         P    +K   E     G          + K  ++  E+    Q    +A  +GV    I+             K   +          G    P     F P       G     V+ +F+  RN+     + R  WYG+   + Q  GWKAA C KLV HA  K M+E  W       ++ T+ ++E P  +   A     I +G     +E L   AE
Sbjct:  236 PPLNEERKNRIRLFLVKMDLAKRAEDAGIAVIVYMDESFVHQAHGSAYSYFPSDDKGIVQDGIGRTTGKGLRMIMVHAITEHGPLAELQ-EGFPIREGWFKAKEN-RAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVL----------DNASYHHCFDEEVKV---------PETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVP--AQGSLPNANRNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYHYVSIHFEKGRNVLDVWKKIRLGWYGDPEWDGQERGWKAANCGKLVQHAIGK-MDE--WIGLYGGNLSGTIGSLEYPVAEYQEATAEDEIEDGVEEQTDEWLGEDAE 636          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.910e-49
Identity = 141/379 (37.20%), Postives = 186/379 (49.08%), Query Frame = 3
Query: 3084 NPPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRAVVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAA--FGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*VCRKELYEAEGAEGSCDL*FPSTEDWKLFQFELELR*WCQQCRGSAGHSGVLSA*ISGKASGEC*DVDARSRV-----------GFYL--DPIVHAHFSPDRNCSGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMKDMNE*VWKDK 4175
             PP +  R A IRRFLVE   A   E+AG AVIV++DE F +Q HGS YSYF +DEDGVVQDG G T GKGL MIM+HAITK GPL  +  +G PI E +FK   +GK     + +  + TA  LWQAK + GDYH AMT+ MFMEWL++ L+PA+ A   F   +MILV    +                +KH +            V RKE     G +G             + ++ LE+         +    G +S      A+ E   ++   R+           G+ L   P     F P           V+  F+  R +     Q RK WYG++    Q GGWKAA CSKLV HA + +MN+ V KD+
Sbjct:  119 TPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKL-CDGLPIEEGWFKETGSGK-----KEMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAKSIRVRRKE-----GEQG-------------VVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKAANCSKLVDHA-IGEMNKWV-KDR 471          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.170e-48
Identity = 147/394 (37.31%), Postives = 194/394 (49.24%), Query Frame = 3
Query: 3084 NPPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRAVVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAA--FGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*VCRKELYEAEGAEGSCDL*FP-STEDWKLFQFELELR*WCQQCRGSAGHSGVLSA*ISGKASGEC*DVDARSRV-----------GFYL--DPIVHAHFSPDRNCSGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMKDMNE*VW-KDKVMNSTMDAIEVPD 4214
             PP +  R A IRRFLV    A   E+AG AVIV++DE F +Q HGS YSYF +DEDGVVQDG G T GKGL MIM+HAITK GPL  +  +G PI E +FK   +GK     + +  + TA  LWQAK + GDYH AMT+ MFMEWL++ L+PA+ A   F   +MILV    +                +KH +            V RKE     G +G  +  F   TE    F               +    G +S      A+ E   ++   R+           G+ L   P     F P           V+ NF+  R +     Q RK WYG++    Q GGWKAA CSKLV HA + +MN+ V  +D V++ T+ ++E PD
Sbjct:  247 TPPLNAERLARIRRFLVMNM-AKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKL-CDGLPIEEGWFKETGSGK-----KEMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETNTKKHNVDLLRMFGAKSIRVRRKE-----GEQGVVEYNFEVPTEPGSSFP--------------AGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHA-IGEMNKWVKDRDGVLSGTIGSLEKPD 613          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 4.070e-48
Identity = 146/389 (37.53%), Postives = 192/389 (49.36%), Query Frame = 3
Query: 3084 NPPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRAVVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAA--FGKNKMILVQRIITLRV*LGGRGAFN*YQDEKHKIVAYVRGWINPC*VCRKELYEAEGAEGSCDL*F--PSTEDWKLFQFELELR*WCQQCRGSAGHSGVLSA*-----ISGKASGEC*DVDARSRVGFYL--DPIVHAHFSPDRNCSGSTASSVNFNFKTTRNIA*FMGQFRKDWYGNET*EEQLGGWKAAACSKLVSHAAMKDMNE*VW-KDKVMNSTMDAIEVPD 4214
             PP +  R A IRRFLVE   A   E+AG AVIV++DE F +Q HGS YSYF +DE+GVVQDG G T GKGL MIM+HAITK GPL     +GFPI E +FK   +GK K     +  + TA  LWQAK + GDYH AMT+ MFMEWL++ L+PA+ A   F   KMILV    +                +KH +    +       V RKE     G +G  +  F  PS           E         G    + V +A      ++     E   V    + G+ L   P     F P           V+ NF+  R +     Q R+ WYG++    Q GGWKAA CSKLV HA + +MN+ V  +D  ++  +  ++ PD
Sbjct:  270 TPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKF-CDGFPIEEGWFKETGSGKKK-----MEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKE-----GEQGFVEHNFEVPSEPGSSFPAGNRE---------GGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHA-IGEMNKWVRDRDAGLSGKIGNLQKPD 637          
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.620e-46
Identity = 98/172 (56.98%), Postives = 120/172 (69.77%), Query Frame = 3
Query: 3087 PPSHQTRKACIRRFLVEFCGALSEENAGDAVIVHIDECFYYQLHGSAYSYFFTDEDGVVQDGTGCTAGKGL*MIMLHAITKHGPLTAINANGFPIPENFFKPKANGKGKKGKRA-----VVTKNTAGMLWQAKSSTGDYHDAMTEGMFMEWLKNCLAPAFEAAFGKNKMILV 3587
            PP ++ RK  IR FLV+   A   E+AG AVIV++DE F +Q HGSAYSYF +D+ GVVQDG G T GKGL M+M+HAITKHGPL  +   GFPI E +FK K N + KK K       +  + TA  LWQAK +TGDYH+AMT+GMFM+WLK+ L PAF+A F  NKM LV
Sbjct:  115 PPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDKGVVQDGIGRTTGKGLRMMMVHAITKHGPLAELQ-EGFPIREGWFKAKEN-RAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLNPAFDAQFKNNKMFLV 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3077.8333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI7.550e-8041.67Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KZM0_9PHAE5.480e-5862.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE1.050e-5236.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIM5_9PHAE1.970e-5137.56DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KP14_9PHAE3.080e-5137.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX2_9PHAE5.230e-5035.13Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX7_9PHAE3.910e-4937.20DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE1.170e-4837.31DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
D8LNM6_ECTSI4.070e-4837.53DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KKV8_9PHAE2.620e-4656.98Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3077contigH-paniculata_contig3077:7557..15741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog2880.D8LCS5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size4412
Cds size738
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.8104446-UTR-H-paniculata_contig3077:7556..91291622929945.8104446-UTR-H-paniculata_contig3077:7556..9129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 7557..9129 -
1691481080.9825134-UTR-H-paniculata_contig3077:7556..91291691481080.9825134-UTR-H-paniculata_contig3077:7556..9129Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 7557..9129 -
1622929945.8241558-UTR-H-paniculata_contig3077:9854..104481622929945.8241558-UTR-H-paniculata_contig3077:9854..10448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 9855..10448 -
1691481080.9923992-UTR-H-paniculata_contig3077:9854..104481691481080.9923992-UTR-H-paniculata_contig3077:9854..10448Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 9855..10448 -
1622929945.8389854-UTR-H-paniculata_contig3077:10819..120591622929945.8389854-UTR-H-paniculata_contig3077:10819..12059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 10820..12059 -
1691481081.0018508-UTR-H-paniculata_contig3077:10819..120591691481081.0018508-UTR-H-paniculata_contig3077:10819..12059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 10820..12059 -
1622929945.8973153-UTR-H-paniculata_contig3077:15474..157411622929945.8973153-UTR-H-paniculata_contig3077:15474..15741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 15475..15741 -
1691481081.0471308-UTR-H-paniculata_contig3077:15474..157411691481081.0471308-UTR-H-paniculata_contig3077:15474..15741Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3077 15475..15741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.8553605-CDS-H-paniculata_contig3077:12059..123831622929945.8553605-CDS-H-paniculata_contig3077:12059..12383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 12060..12383 -
1691481081.0129075-CDS-H-paniculata_contig3077:12059..123831691481081.0129075-CDS-H-paniculata_contig3077:12059..12383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 12060..12383 -
1622929945.8689554-CDS-H-paniculata_contig3077:13424..138131622929945.8689554-CDS-H-paniculata_contig3077:13424..13813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 13425..13813 -
1691481081.0289078-CDS-H-paniculata_contig3077:13424..138131691481081.0289078-CDS-H-paniculata_contig3077:13424..13813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 13425..13813 -
1622929945.881177-CDS-H-paniculata_contig3077:15449..154741622929945.881177-CDS-H-paniculata_contig3077:15449..15474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 15450..15474 -
1691481081.0388854-CDS-H-paniculata_contig3077:15449..154741691481081.0388854-CDS-H-paniculata_contig3077:15449..15474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3077 15450..15474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3077.8333.1prot_H-paniculata_contig3077.8333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3077 12060..15474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3077.8333.1

>prot_H-paniculata_contig3077.8333.1 ID=prot_H-paniculata_contig3077.8333.1|Name=mRNA_H-paniculata_contig3077.8333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MGTSSAKLAAKHYRVKNESRRSKSAGASHPVWKFYSCHVNSLFRKLAICL
LCGEAKYYKPAEVNIKDGSPTNLNTQLPRHKEAHREVNAAKAGKNNGAAP
VMKSSDNEGSILRFLKPEIGDWNAALIRFIGMSNQPISIVENKHFQAMVH
ITKKGIKILTGRALLADMEAIRDDLQVSIAVAVMLKDQYVCMAADGWTSD
ANDTSVSLTVVSINGDWEVVKLVLNCAKSEGSTTGDRRAKKWRPY*
back to top

mRNA from alignment at H-paniculata_contig3077:7557..15741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3077.8333.1 ID=mRNA_H-paniculata_contig3077.8333.1|Name=mRNA_H-paniculata_contig3077.8333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8185bp|location=Sequence derived from alignment at H-paniculata_contig3077:7557..15741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAGTGTTGAAGGATTTATGAACATCTGTAATGCGACTGAAATACGAT TTTTTAAATTATCAGTACAATGAGTATTCACTATTCAATATTATGTCAGC GGCTTCAACTTCGGCTTCTCCCTCCTCCAGTGCAGCTACTACCGCCATTG AGTGTCGCTTGCTCACGGTCAGGCTGATGATCACTACCCTGTTCCTCACG CGGCGATGATATTGGCGCGGTTCGCGCAAACCGACCGCCCATTCAATTCT GCTTTCGTGGACATGCGATGGGTACGAGCTCAGCTAAACTAGGTACTGCC TGTACATGAACTGTGACCTGGATACTCTTTGGGTGTGCGCACGTTGGAGG ATTCCAATTCCTGTGTGCACATGCAATTGAAACATGGGCTACTTGTATCA AAATAGAACAGATTTCCACGGTCGGCAGGGCATATTTTGATCTGCATTTT CTCCATCCACAGAATTTTCCTCGCGAACGTAGTTGAAGATCGCCTGTTTT GCTTGCTGTGGCTCTTGTGTAGCATTTCGTTGTTCGCTGTGACAGTAGAT GGCAAAAGTGCAGTTACAAGTAGCAATAAGCGATAACCAATGGTCAATTA TCTCTACTCAAAGACTGTGAGTTGTGCGCAGTGTTTTTCTGTAAATACTC TGTATTCTGTAGCGCAGAATTGTTTTATGCATGTAGGAAATTCTCAATAT TGCTGCAGTTGAGCAGGTCACCGGTTCAATTTTTTTTCAGGGTTCTGCAC CTGCCCACCTGTCCCACTAGTCACCGAGGTGACTGCTGATCTATCTATGT CCAATCGGCCATGGACAGGTGTGCCGAACAGGTGCCCGGCTAGGTAGTCG TTTTCGCAACACGTGACGTTTGGGAGTAAGTTGTTTTGATTCGAGATATT GTGGTTACCGTTCGGAATATCGTGATTGCAGTTGTAGGCTTTGACACACG GTGAATCAATCAAGCAGGTGGAAGCCACCCGTACGATTCCCACCGGGGCA ACTAGCCTCCATGGTGGCTGTCGAAAATTTTCATTGGGCCAACCAGCAAT CTGGTGGCTACTGAAGATTCCAATCGGGCCGACTGGCCACCGCAGTGGCT AATGGTTTTTTGTCCTGCCAAATCTAAGCGGTTCACTGGTTCTCAATTCC TTGGCCAGGTGCGGAAGTTTATTGTCCACACTGACCGTGCTTAGAAGTTG ATTGAAAGTAGACTTTAAATGTTTCGAAACGACGACCGCCAGCACTAATC ACCTAACCGTATTAGGTGATACAAATATAGATTCCTTCCACTTTTAACTA TCGTCCATAACCTGTGTTGCTCACTACCCCATCGCAAGAGGTGATTGCTG CTTCACTACCTAAAAGATCGCTTTCTCGGGTTGAATTCCGCCCTGTACGC ATCCAAGTACAGAGTTACCACAAAACTCGCTCCCCCAATTTTGCCGCTCC TACTCTCTCGGTATACGAGATATATTTGTTTAGTACTCATAATATCAGAT TCGGGAAAAGCGCAAATTGGTAGAGTTGTGTGTCGGTATCGATATCGATC GAGATGTCGTCCGATACGATTTTATCTATTTATCGTTTTTGAGTGCCTAT CTATCGGCGACTGTCGTTACCAGCTGTATAGTTCTGCATATGTCATTATC CATTAACTGCACGATACATGGGTTATTATCCATTTGCCTCACCGTTAGCG CGTTTGCGTGTTGCGCGGACCACGAGGTCACCGGCAGCGCCATAAACTCA GAGAGCTGCCTATCTCCAGGTTCACAGTCCCTTTTAGGCTCACCGATCTC TCCAGACTTACAGTTTCCTCTAGACTCGTCTGCACCCGCTGGTTCATCTG GCTAGGCTGGCAGTCTCACATATACTGCGTTTGCCACACCGCAGCTTGAA TCTGCGTTGACGCGTGCGAACACTGCAGCTGCCAAACATTATCGGGTGAA GAACGAGTCACGACGAAGCAAGTCAGCGGGCGCGTCTCATCCTGTGTGGA AGTTTTACTCTTGCCACGTCAACAGTTTGTTCAGGAAGCTTGCAATTTGT CTTCTTTGCGGCGAAGCAAAATACTACAAGCCTGCAGAAGTGAACATCAA AGACGGCTCTCCAACTAACCTCAACACCCAGCTTCCCAGGCACAAGGAGG CGCATCGCGAAGTGAACGCTGCGAAAGCGGGCAAGAACAATGGTGCGGCT CCGGTGATGAAGTCGTCCGATAACGAAGGCTCGATTCTGCGCTTTCTTAA GCCTGAAATCGGGGATTGGAACGCCGCTCTCATTCGGTTCATCGGCATGA GCAACCAGCCTATCTCGGTGAGTCCACAATGTTGTATTTTTTTTTATTGT ACAATTGCGTACTCCTCTGTTACATGTTATTAGCTACCACTATCACATTT TGTATCATGGTGGTAGTACAGACAGTAGCAACGTATTGCGCTTCTGTCTT TCTCTCTGCACTGCTGACTGTGTTGTAGTGTTGTAAGTATCATAAACAAA CACTGGGTACCAAGCTTTTGTATGCTGTATGTTTTTGACACCACCTCCAT CTCTACTGCTACAGCTATAGTACAAAGTACAGCCAGAACTGACTGCCTGA ACAGCTACTGAGACTGACAACACTAGAAGCCGTCATTTTGCCACTAAATA TTTTGAACACTTTTGCTCACTGGCACGATGTACAGGGAAACTGACTGCCT TTACTGTTACTGACCGTAATTAAGCACGGGATAAAACTAAGCGTTTTTAA GTGCTATATTATATTGCTCACGACTACCTGTTCATAAGCGTACAGCAGTA CAAGAGCTTCAATTCAAATAATTCAAGTTACGTCGTGCGGAGCAGCACTA CTATACACCTCGCGTCTGTGATTCGCTGAAGTTGAAGTTCCCTGTGAAGC CGATACCAGGTGCTCGGTATCTGCGGTAGCAGCATTACTGTACGCCTCGC GTTTGTGATCTGCTGGAATTGAAGTGCCCTGTGAAGCCGATACCGGGTGC TCGGTGTCTGCGGTAGCTAGGGTGTTTCACTTTATGTGTTGTTATATATT ACGCTTGCTTCCACAAGCTCATCTGTGGCTATTGTTTTTTTCTATAGAGC TCTACTATTAAACCCGTGATATGATAGTTGTTGTGCTTGCGTTATTAGTT GCCTTTTGCTTCTTTATGTTCCCAGGCACATGTATGTATTACGACTTGAC AATATCGAGGACTTCCGTTAAATGTCTGCATGTGTGGTTTGTTTCACGTA TTCTCGTAACACGCAACCAATTGCGTTTTCGTAATTTTTGTCACTACTGT CAGCCAATCCTTCCGTTTGGTGTTGTGCACCTCACTTCGCGTTTTGTTTG CTCTTCAGATTGTGGAGAACAAGCACTTCCAAGCAATGGTGCATATCACG AAGAAGGGCATCAAGATACTAACTGGACGTGCCCTTCTCGCGGATATGGA GGCGATTCGGGACGATCTGCAGGTCTCAATCGCCGTCGCCGTAATGCTGA AGGACCAGTATGTGTGCATGGCCGCAGACGGCTGGACGTCCGACGCCAAC GATACGTCCGTGTCCTTGACGGTCGTCAGTATAAATGGGGACTGGGAGGT CGTGAAACTCGTGCTGAACTGTGCGAAGTCCGAGGGGTCCACGACAGGAG ACAGACGGGCGAAGAAATGGAGGCCATACTAGGCTGCCACAAGCTCAATG GGCGCGTGACGGAAGGTGTCACGGACTGTGAGCCGTCTATGGTGACTGCC AGTCGACGGCTCACGAAAAAAAAGGTGTTGACGCACATCGGGTGCATCAG CCATCGTGTAGTGCACCACGTGGCTATTCTTCGACGGTCTGGGTAAAGAA GACGATGACTCCGACTCGTGCGTTGGTTACCCGCTACACGAAATCCAGCC AGGCGGCCGATCGGCTCGAGGAGTAAGTGCTACAAATTTAAGGGCATAAC AGTGTGGAAGGTGATGCAGGACGTGGAGACGCGGTGGTCGTCCACGCACG ACTGCATTGTCCGCGCCGTGGACCTGCAGTCAGCAATCAGTCTGCAAGAG AAAGGTGACGGCATCGCCGCTCTGCTGTCGTCCGTGGACTGGTGCGTCTT GAAGCAGTGAGTGACGGGAAGCTTGATCGTGCTATTTATGCAAGACCTTC GCCAGGGCATGGAATCATACGTAAATTTGCAGCAACCCAAGCCAATGGCG ACAGAAGACGAGGTGAACGTGCGTGCTATTCTCGTGCCCTGCGTGGCGGC CCTGATCGCGGTCCACGTCAACCGCGGGGGCAACGGGACCAACGTCGTGA TGTACAGGGAGGGACCGCGGCGACAGCCCCAGGGATTTCGCCTGGAGCAC TCATGCCTACTGCTCTCGACCCACGATGCAAGAGTTGCATGGGGTCCCGA ACGACAAGAAGGAGACCGTGTGCAGATCGTGGTGCAGCGGGCTGCAGCAG TCGCCGTGCAATAGCGGATGACCGACGACCGCACAGTGAAATCGACCCCG TCGCTAAGGGTGCTATCGGTGGCATCGACCTCATTCGCGCAAGCAAATGG CGGCTCTGCCAAGCGGTTTTGCGACAGGTTCGTGGCGGCTTCCAAGGCGC AGGCGGGCAAGGGTCCACCGGGACGCGCCGCGGCGTATCTATCGTTCGAA CACTTCGAGCACCTGGCGGACCTGGAGATCGACAAGTAACGGGAGATGAA CGGCATCAGCATGGAAGACGAGCACAAGGTACGACGGTCTATCCGTTGCC TCTCAAATGATAGCGGCAAAATGCCTGCAATCTGCTTCTCCGGGTAGTGC TTGCCAGGCGTGTGCTCGCCATCCCGGCTACACAAGCTCAATCGGAACGC GCGTTCTCGGCCGCCGGTCTAATTGCTACCAAGTTGTGCAACAGGATGGC GCCGGACAATCTCGATCTGCTGGTAACGCTGCGTAACATGTGGCCAGTGG TGAAGTGGTGGCGATCAAACCCGTGCGAGATTCTGTGTCCTTGATTGTGT ATCGTATGTGGTTGCGTGGTTGCCTAGTTTTACTCGTCGGTTACAGCAAA TAGTTCGGTTTCCATGTTTGTCGTTTCACATCCGCAAGCATTCGTTAGTC GTACGTTTGTTGCGCACCCGGGTGCGCTCGCGACTTGTGTTTTTTTAGCG ACCTTGGTGGATTAAGAGTCCGGTCTTCGCAACTTTCTGCCACAGGTGTT TCATTTGCGTTCAGTCTTAGCGGGCTTCAACACTGTACACATTTTTTTCC TGGTTGATGATTAGAGCAAATAATATCCCCTCTTGTTATACAGAATACCG AGCTGGGTCTGCGTGGGCACCATGGCTCAAAACAAGCGCACTACCAGAGA TTATCCGCGAGATGCTCCAAAGCGCAAAAAAAAACCCAAGGGCAGGCTTG ACACTACAAACTTGGTGAAGATGGTGGCCCCCAAGACGGAAACAGTTGAA GTGAGGGAGGCCGCATGCGACGATTATGCTGAAGCACGCAACGCGGCAGC ACATGAGGCAACCAGAGTTGAGGCAGAGACTGTTGCCATAGCTCGGGCAC AGCTTGACAAAGATCTGACAGACTTTGCCAGAGAAAATGCCAGATTTGAG GCAGAGACTGCCAAGCATATGACAGTGCTTACTACCGTGGCTGAGCGCGA GTCGAGAGTGGAGACACATGAGAAGAAACTCAGAGAACAAGAGCGTGTTC GTATCCATACAGAGGTGCAGCAGCGCGGGATCACCTCGCTCGTCGGCAGG GAGCGTTGTTGGACGAGTCGCAGTCTCGGGACATCGTATTGGTTTAGTTG AATTTCATCCAGTCGGGCATGGACCGAGACCCAGCCGTCAAGGAGGTTGC AAGGGTGATGCGCGTCGGCCCGAAGAAAGTGTATGAGGTAAGAATTGCGG TATAGTGAATATAGGATACATTGGAGTGGTGCTGTACAGACAGTACTATA TAGTCCGTGTTGTACAGACATGTGGGTGTACTCTCTGATGAGACAGTATA CTGTATTGCCGGTACTGTGTGTTGTACTGTCTCCTGTCTGTACAGACAAC ACGGTACATTGTACTGTCTGTTGCCTTTTGCGTAGTACTGTCTGTTGTCT CTTGTTGTATATTGTTTTGCTGCTATATTCGAGATCTTGAAAAATGTATC GGCGCATCCTCCGTGTTTACCATTTCACCCTGTCTGTCGGTGAAGAATGT TGGCTGTACTTCTGTATGTAGGCCGAAAAATGCTGTTGATGTTGCCCTCC CTGGGAAGTGATAGTGCTGGCTATTGATACTGATCATACCTCCAAAGTGC TGGCTGTTTTAAACTCTCCATGGGTTTTCTGTATCTTGATATGCTGAAGA TTCCGTGCACTCTGCAAAGCGAGAATGGTGCTGTTTTTTGTTGACCTTAC CTCAAACGGACTGTCCTAGTTGTCCTGTCAAAGTGTATACTGTACTCCCT TATCTTGAAAATTGCCCATGCTTGTCATAAAATAGAGTGAGAATGATAAG CATTTTTCAACTTGTTGAATGTATTGTATGCTGCACCTGTGTTTTGGGAT AATCATAATTGCACTTCCCCTTGCGCGGTAAACGAATTCGCACTTGGTAT GAGGACAAGAAGCTCATAACGACGTCAGAGAAGAAACGAGGCGCGACGAA AGGAGCGGACGGGTGGAAGATGCCACCGACCCCCAAGTAGCCACGCTTTT GGCCTTCATCGGCGGCAAGCACAAGGACGGGCAGCAAGTTTTCTGGCGGA CGGTGCGCGAATGGATCAAGGCCGAGTGTCATCATGAGATGTCAAACCGC GCGGTAGGAGGGTTGTTGTGTAGGCTTGACTTTAGACGCCGTCGAGGAAG GATTGAAATCCTCCCTCTCATCAAACGAGGAAAGCATGTATTCGCAGGTT TCTCGTAGAGTTTTGTGGTGCTCTTTCTGAAGAAAACGCAGGTGATGCAG TGATCGTGCACATCGATGAGTGTTTCTACTACCAACTGCATGGTTCTGCT TACTCGTACTTTTTCACGGATGAAGATGGAGTAGTGCAAGATGGGACGGG TTGTACTGCAGGCAAGGGCTTGTGAATGATCATGCTTCACGCAATCACCA AACACGGGCCGTTAACCGCTATTAATGCGAACGGTTTCCCTATCCCAGAG AATTTTTTCAAACCAAAAGCTAACGGCAAAGGTAAGAAGGGCAAGAGGGC GGTGGTTACAAAGAATACCGCAGGGATGCTTTGGCAGGCCAAAAGTTCCA CAGGCGATTACCACGATGCTATGACTGAGGGCATGTTCATGGAGTGGCTC AAGAATTGCCTTGCACCGGCTTTCGAAGCTGCTTTCGGAAAGAACAAGAT GATTCTTGTTCAACGCATCATAACACTACGGGTATGACTAGGAGGTCGGG GTGCCTTCAACTAATACCAAGATGAAAAACACAAAATTGTTGCGTACGTA CGGGGCTGGATCAATCCATGTTAAGTGTGTAGAAAAGAATTGTACGAGGC GGAGGGCGCGGAAGGGAGTTGTGACTTATAATTTCCAAGTACAGAAGACT GGAAACTTTTCCAATTCGAACTCGAACTGCGGTAATGGTGTCAGCAGTGC CGAGGTAGCGCTGGCCACTCGGGCGTTCTTTCAGCTTAGATTTCGGGAAA AGCTTCTGGAGAATGTTGAGATGTTGATGCACGGTCAAGGGTGGGATTTT ATCTTGATCCCATCGTACATGCCCACTTTTCACCCGATCGAAACTGTTCT GGCAGTACGGCAAGCAGTGTCAATTTCAACTTCAAGACTACCCGTAATAT AGCATAGTTTATGGGGCAATTTCGGAAGGATTGGTATGGAAATGAGACAT GAGAAGAGCAGTTGGGGGGTTGGAAGGCGGCAGCCTGTAGCAAACTCGTT TCGCACGCCGCCATGAAGGACATGAACGAGTAAGTTTGGAAAGACAAAGT AATGAACAGTACCATGGACGCCATTGAGGTGCCGGATGATCAAGGCTTCA GTGCCGCCGGGAACAAGGCTATCGTTGAGGGTGATGGGGTGATGCTCGAG GAGTCGCTTGATATCGCTGCGGAAGTTTGTGGGTATAGGAGAGAGCGTGA ACGGGGATGTGCTGGTCTAGCAGGCACAAATTGAGAGTTCCCAGATTATG TAAGTAGCAACTTGTAACAATAGCTTTGGGGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3077:7557..15741-

>mRNA_H-paniculata_contig3077.8333.1 ID=mRNA_H-paniculata_contig3077.8333.1|Name=mRNA_H-paniculata_contig3077.8333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig3077:7557..15741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTACGAGCTCAGCTAAACTAGATGGGTACGAGCTCAGCTAAACTAG
CTGCCAAACATTATCGGGTGAAGAACGAGTCACGACGAAGCAAGTCAGCG
GGCGCGTCTCATCCTGTGTGGAAGTTTTACTCTTGCCACGTCAACAGTTT
GTTCAGGAAGCTTGCAATTTGTCTTCTTTGCGGCGAAGCAAAATACTACA
AGCCTGCAGAAGTGAACATCAAAGACGGCTCTCCAACTAACCTCAACACC
CAGCTTCCCAGGCACAAGGAGGCGCATCGCGAAGTGAACGCTGCGAAAGC
GGGCAAGAACAATGGTGCGGCTCCGGTGATGAAGTCGTCCGATAACGAAG
GCTCGATTCTGCGCTTTCTTAAGCCTGAAATCGGGGATTGGAACGCCGCT
CTCATTCGGTTCATCGGCATGAGCAACCAGCCTATCTCGCTGCCAAACAT
TATCGGGTGAAGAACGAGTCACGACGAAGCAAGTCAGCGGGCGCGTCTCA
TCCTGTGTGGAAGTTTTACTCTTGCCACGTCAACAGTTTGTTCAGGAAGC
TTGCAATTTGTCTTCTTTGCGGCGAAGCAAAATACTACAAGCCTGCAGAA
GTGAACATCAAAGACGGCTCTCCAACTAACCTCAACACCCAGCTTCCCAG
GCACAAGGAGGCGCATCGCGAAGTGAACGCTGCGAAAGCGGGCAAGAACA
ATGGTGCGGCTCCGGTGATGAAGTCGTCCGATAACGAAGGCTCGATTCTG
CGCTTTCTTAAGCCTGAAATCGGGGATTGGAACGCCGCTCTCATTCGGTT
CATCGGCATGAGCAACCAGCCTATCTCGATTGTGGAGAACAAGCACTTCC
AAGCAATGGTGCATATCACGAAGAAGGGCATCAAGATACTAACTGGACGT
GCCCTTCTCGCGGATATGGAGGCGATTCGGGACGATCTGCAGGTCTCAAT
CGCCGTCGCCGTAATGCTGAAGGACCAGTATGTGTGCATGGCCGCAGACG
GCTGGACGTCCGACGCCAACGATACGTCCGTGTCCTTGACGGTCGTCAGT
ATAAATGGGGACTGGGAGGTCGTGAAACTCGTGCTGAACTGTGCGAAGTC
CGAGGGGTCCACGACAGGAGACAGACGGGCGAAGAAATGGAGGCCATACT
AGATTGTGGAGAACAAGCACTTCCAAGCAATGGTGCATATCACGAAGAAG
GGCATCAAGATACTAACTGGACGTGCCCTTCTCGCGGATATGGAGGCGAT
TCGGGACGATCTGCAGGTCTCAATCGCCGTCGCCGTAATGCTGAAGGACC
AGTATGTGTGCATGGCCGCAGACGGCTGGACGTCCGACGCCAACGATACG
TCCGTGTCCTTGACGGTCGTCAGTATAAATGGGGACTGGGAGGTCGTGAA
ACTCGTGCTGAACTGTGCGAAGTCCGAGGGGTCCACGACAGGAGACAGAC
GGGCGAAGAAATGGAGGCCATACTAG
back to top