mRNA_H-paniculata_contig3073.8327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3073.8327.1
Unique NamemRNA_H-paniculata_contig3073.8327.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3073.8327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3073contigH-paniculata_contig3073:559..1495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size213
Cds size132
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3073.8327.1prot_H-paniculata_contig3073.8327.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3073 640..1495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.2832744-UTR-H-paniculata_contig3073:558..6391622929945.2832744-UTR-H-paniculata_contig3073:558..639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3073 559..639 +
1691481080.8310087-UTR-H-paniculata_contig3073:558..6391691481080.8310087-UTR-H-paniculata_contig3073:558..639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3073 559..639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929945.3120015-CDS-H-paniculata_contig3073:639..7071622929945.3120015-CDS-H-paniculata_contig3073:639..707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3073 640..707 +
1691481080.839929-CDS-H-paniculata_contig3073:639..7071691481080.839929-CDS-H-paniculata_contig3073:639..707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3073 640..707 +
1622929945.3437963-CDS-H-paniculata_contig3073:1431..14951622929945.3437963-CDS-H-paniculata_contig3073:1431..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3073 1432..1495 +
1691481080.8477423-CDS-H-paniculata_contig3073:1431..14951691481080.8477423-CDS-H-paniculata_contig3073:1431..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3073 1432..1495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3073.8327.1

>prot_H-paniculata_contig3073.8327.1 ID=prot_H-paniculata_contig3073.8327.1|Name=mRNA_H-paniculata_contig3073.8327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MTESTLKAEGNPDYCQQASSRTSERRCRGQVRVHRERREREAKD
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mRNA from alignment at H-paniculata_contig3073:559..1495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3073.8327.1 ID=mRNA_H-paniculata_contig3073.8327.1|Name=mRNA_H-paniculata_contig3073.8327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at H-paniculata_contig3073:559..1495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCAGGGAGGTTGGAACGAACGGCGCGCTTTGGAGAATGACACGAAGG
TTAGAAAGCGTAGCCCGAGAGTGTGGAGGAAATGACGGAGTCTACCCTGA
AAGCTGAAGGAAATCCAGACTATTGCCAGCAAGCTTCGAGCAGAACAAGG
TGAGATGGCGAGTGCCAGTCAGCTGTGGTCATATTGCGGGAATAGTTGTA
TATTTTTTTCTAGGATTAGCTCTGTCGATAAATCAGATATACATGATTTT
TTGGTTGACGCGCTGAGAGGTAATATTTGTAGCCGGTTGTGGAGTTTCAT
GGTGCTCCTCGCTGTCCCATTAACTGCGTTCCATTTTCATACCATACCCT
CAAGCTCGTGGTCTCGGCGTGTGTCTTGGGGGAGGTAAGTAGTAGACAGG
ACATGACGCCATTTGTTTAGTTTTATATGAATACAATGATGGCGATTGTT
AGGCACTTTCTTGACTACAAATTGCGCTTTCTAGCTCCCGTAGGGAGTAG
GGAGGGAAGCCAGCGATCGTGCAGGAGAAGATAGGGACTCCAGCAGAACA
CCACCAGCAGCGACGAAGTGTCATACAAAACGGTACCCTAGTGCAGATGG
TGTTTCGTTTGCGGTGGTGTGTCTTGTTTTGGCCAAAGTTAGGGAGCAAG
CTTTCCGACTAGAGCATGGGGTGGATAGGCCATGTTTGGAGGGCAGGGCA
TATTCGGTTTCGAGAGTGGGCGGGTGTTCGATACAATTGTTGGCGGAATG
TCAATCGTTTATTTTTGCTTGTTTGCAGCCCATTTAAGCTGTGTTGGAAG
TATTGGATACGCCCGATCAACACAGGGCATCGTTTTTTGTGTTGTTGCCT
TGTGGTTGTTGTTCCTTTTACAGCGAAAGGCGCTGTCGCGGACAGGTACG
GGTGCACAGGGAACGACGAGAGCGAGAAGCGAAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig3073:559..1495+

>mRNA_H-paniculata_contig3073.8327.1 ID=mRNA_H-paniculata_contig3073.8327.1|Name=mRNA_H-paniculata_contig3073.8327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig3073:559..1495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGAGTCTACCCTGAAAGCTGAAGGAAATCCAGACTATTGCCAGCA
AGCTTCGAGCAGAACAAGATGACGGAGTCTACCCTGAAAGCTGAAGGAAA
TCCAGACTATTGCCAGCAAGCTTCGAGCAGAACAAGCGAAAGGCGCTGTC
GCGGACAGGTACGGGTGCACAGGGAACGACGAGAGCGAGAAGCGAAGGAT
CGAAAGGCGCTGTCGCGGACAGGTACGGGTGCACAGGGAACGACGAGAGC
GAGAAGCGAAGGAT
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