mRNA_H-paniculata_contig3070.8321.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3070.8321.1
Unique NamemRNA_H-paniculata_contig3070.8321.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3070.8321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3070contigH-paniculata_contig3070:6238..6607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size218
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3070.8321.1prot_H-paniculata_contig3070.8321.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3070 6270..6580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.5814598-UTR-H-paniculata_contig3070:6237..62691622929944.5814598-UTR-H-paniculata_contig3070:6237..6269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3070 6238..6269 -
1691481080.5695646-UTR-H-paniculata_contig3070:6237..62691691481080.5695646-UTR-H-paniculata_contig3070:6237..6269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3070 6238..6269 -
1622929944.642488-UTR-H-paniculata_contig3070:6580..66071622929944.642488-UTR-H-paniculata_contig3070:6580..6607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3070 6581..6607 -
1691481080.6063442-UTR-H-paniculata_contig3070:6580..66071691481080.6063442-UTR-H-paniculata_contig3070:6580..6607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3070 6581..6607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929944.5995648-CDS-H-paniculata_contig3070:6269..64171622929944.5995648-CDS-H-paniculata_contig3070:6269..6417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3070 6270..6417 -
1691481080.5824509-CDS-H-paniculata_contig3070:6269..64171691481080.5824509-CDS-H-paniculata_contig3070:6269..6417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3070 6270..6417 -
1622929944.6225107-CDS-H-paniculata_contig3070:6569..65801622929944.6225107-CDS-H-paniculata_contig3070:6569..6580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3070 6570..6580 -
1691481080.5982106-CDS-H-paniculata_contig3070:6569..65801691481080.5982106-CDS-H-paniculata_contig3070:6569..6580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3070 6570..6580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3070.8321.1

>prot_H-paniculata_contig3070.8321.1 ID=prot_H-paniculata_contig3070.8321.1|Name=mRNA_H-paniculata_contig3070.8321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MLQRRRANCRPVDEVTCEEVASGGHLEVLQWCTANGCPWDARTCLRPKDP
VM*
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mRNA from alignment at H-paniculata_contig3070:6238..6607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3070.8321.1 ID=mRNA_H-paniculata_contig3070.8321.1|Name=mRNA_H-paniculata_contig3070.8321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=370bp|location=Sequence derived from alignment at H-paniculata_contig3070:6238..6607- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCCGCTGGAGGGGGTCATCTGGATATGCTGCAACGGTGGGCATCGAA
CTTCTTTCCTTGGAGTAACGCAATACTTTCCTCGGCTGCTGGAGTTGGGT
ATCTAGCAGGTGCTCCAATAGAGCCAAGCCAAGCGCTGTCGTCTAGATTA
TGGACTGGGTTGGGCGGTCGCTGTAGGGGAGCATCAGGAGACGCAGAGCG
AACTGCCGTCCTGTAGATGAAGTCACCTGTGAGGAGGTTGCCTCGGGTGG
GCATCTGGAGGTGCTACAGTGGTGCACAGCCAATGGGTGTCCTTGGGATG
CTCGGACATGTTTACGGCCCAAGGATCCGGTCATGTGAATCTGGCGCAGT
GGTGCAGGGTTAACGGCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3070:6238..6607-

>mRNA_H-paniculata_contig3070.8321.1 ID=mRNA_H-paniculata_contig3070.8321.1|Name=mRNA_H-paniculata_contig3070.8321.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig3070:6238..6607- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCAACGATGCTGCAACGACGCAGAGCGAACTGCCGTCCTGTAGAT
GAAGTCACCTGTGAGGAGGTTGCCTCGGGTGGGCATCTGGAGGTGCTACA
GTGGTGCACAGCCAATGGGTGTCCTTGGGATGCTCGGACATGTTTACGGC
CCAAGGATCCGGTCATGTGAACGCAGAGCGAACTGCCGTCCTGTAGATGA
AGTCACCTGTGAGGAGGTTGCCTCGGGTGGGCATCTGGAGGTGCTACAGT
GGTGCACAGCCAATGGGTGTCCTTGGGATGCTCGGACATGTTTACGGCCC
AAGGATCCGGTCATGTGA
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