mRNA_H-paniculata_contig30698.8313.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI001CDB8C50 (uncharacterized protein LOC122853856 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDB8C50) HSP 1 Score: 63.9 bits (154), Expect = 4.880e-10 Identity = 31/84 (36.90%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 KWRSDSGATYHMTCFFEYMSNL-RPSSGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
KW DSGA+YHM+ E+ +N+ + +RVG G++L+ YGT+ I + + V + L +V ++P+L+ NLFS+ +A +G
Sbjct: 288 KWLFDSGASYHMSGRKEWFTNMVKKEKSLIRVGDGKVLETNLYGTINISVFNGESWVKMSLNNVLFIPELKYNLFSMSSAADKG 371
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A0B1PCE4_UNCNE (Uncharacterized protein n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1PCE4_UNCNE) HSP 1 Score: 54.7 bits (130), Expect = 9.070e-7 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 4 WRSDSGATYHMTCFFEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQ-SEGGNVTVMLRDVAYVPQLRS-NLFS 225
W DSG HMT E +S L G V + GR + +E G L++ L+ S GG ++V +R+V YVP+L+ NL S
Sbjct: 322 WILDSGCFAHMTSRKELLSPLNHHKGVVTIANGRQIPVEGKGNLSLNLRTSTGGEISVTIRNVLYVPELKGGNLIS 397
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI000CD9675F (uncharacterized protein LOC111894786 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9675F) HSP 1 Score: 53.1 bits (126), Expect = 3.200e-6 Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSL 228
W D+GA+ HMT + Y S L + +G+VR G G + I+ G+ I+ + + G +M +D+ Y+P LRSN+ SL
Sbjct: 352 WYLDNGASNHMTGNYSYFSELNKNITGRVRFGDGSCVSIKGKGS--ILFEGKSGEQKLM-KDIYYIPSLRSNVISL 424
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A4C1U0D8_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1U0D8_EUMVA) HSP 1 Score: 53.1 bits (126), Expect = 3.280e-6 Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query: 1 KWRSDSGATYHMTCFFEYMSNLRPSSGK-VRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
KW DSGA+ HM C +S+ S K V VG G ++ + G + + + + V + +V +VP+L++NLFS+ A RG
Sbjct: 19 KWLVDSGASEHMCCDRSLLSSFSSVSQKSVIVGNGAIISVLGSGKMVVQVYNGSEWVDTTIDNVLFVPELKTNLFSVNRAADRG 102
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI0006A74794 (uncharacterized protein LOC106308606 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74794) HSP 1 Score: 52.4 bits (124), Expect = 4.390e-6 Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
W D+GA+ HM+ EY S L +GKVR G +DI+ G +IV + G + L +V Y+P+LRSN+ SL+ A K G
Sbjct: 62 WYLDNGASNHMSGNIEYFSLLDEKVTGKVRFGDDSRIDIK--GKCSIVFINNEGKKKI-LANVYYIPELRSNIISLRQAIKSG 141
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A1Y1IY27_KLENI (CCHC-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IY27_KLENI) HSP 1 Score: 52.4 bits (124), Expect = 5.790e-6 Identity = 28/86 (32.56%), Postives = 44/86 (51.16%), Query Frame = 1
Query: 1 KWRSDSGATYHMTCF---FEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
+W DSGA+ HM F + L P + ++ G L++ GT+ + ++ G L++VAYVP + NLFS+K A G
Sbjct: 248 RWIVDSGASQHMAGIKKLFSTLKMLEPGTRAIKFGNKGFLEVAGVGTVELRCETSTGERLNFLQEVAYVPDVTENLFSVKKATAVG 333
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: UPI000CD859E9 (uncharacterized protein LOC111905051 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD859E9) HSP 1 Score: 52.4 bits (124), Expect = 5.950e-6 Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSL 228
W D+GA+ HMT + Y S L +G+VR G G + E G+ I+ + + G VM +D+ Y+P LRSN+ SL
Sbjct: 312 WYLDNGASNHMTGKYSYFSELNKRITGRVRFGDGSCVRTEEKGS--ILFEGKNGEQKVM-KDIYYIPSLRSNVISL 384
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A0L7KS65_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KS65_9NEOP) HSP 1 Score: 51.2 bits (121), Expect = 1.450e-5 Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 1 KWRSDSGATYHMTCFFEYMSNLRPSSGK-VRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLK 231
KW DSGA+ HMT ++ +++P G V V G + G ++I + NV ++DVAYVP+L SNL S+K
Sbjct: 159 KWFIDSGASKHMTPRRDWFKDIKPLEGSTVTVANGEKIVCGGIGDISI---NTACNVVDSIKDVAYVPELTSNLISVK 233
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: A0A177VZF9_BATDL (Integrase catalytic domain-containing protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177VZF9_BATDL) HSP 1 Score: 51.2 bits (121), Expect = 1.590e-5 Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 1
Query: 13 DSGATYHMTCFFEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFS 225
DSGAT HM C +++++L P + ++ G GTLTI + G T+ L DV YVP + NL S
Sbjct: 342 DSGATAHMICHKDWLTDLVPITREIHCSGAEKHVATAKGTLTIESEYNGRKSTIHLADVLYVPTFKVNLLS 412
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Match: K4FWF5_ARAHA (Uncharacterized protein n=1 Tax=Arabidopsis halleri TaxID=81970 RepID=K4FWF5_ARAHA) HSP 1 Score: 50.8 bits (120), Expect = 2.170e-5 Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 4 WRSDSGATYHMTCFFEYMSNLRPS-SGKVRVGGGRLLDIENYGTLTIVLQSEGGNVTVMLRDVAYVPQLRSNLFSLKAAQKRG 249
W D+GA+ HMT + S L GKV+ G G +DI G++ ++E +++D+ Y+P+L+SN+ SL A + G
Sbjct: 325 WYLDNGASNHMTGNKTFFSELNEKIKGKVKFGDGSCIDIGGKGSILFQSKTEEQR---LVKDIYYIPELKSNILSLGQATEAG 404 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30698.8313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30698.8313.1 >prot_H-paniculata_contig30698.8313.1 ID=prot_H-paniculata_contig30698.8313.1|Name=mRNA_H-paniculata_contig30698.8313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp KWRSDSGATYHMTCFFEYMSNLRPSSGKVRVGGGRLLDIENYGTLTIVLQback to top mRNA from alignment at H-paniculata_contig30698:257..505- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30698.8313.1 ID=mRNA_H-paniculata_contig30698.8313.1|Name=mRNA_H-paniculata_contig30698.8313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig30698:257..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30698:257..505- >mRNA_H-paniculata_contig30698.8313.1 ID=mRNA_H-paniculata_contig30698.8313.1|Name=mRNA_H-paniculata_contig30698.8313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig30698:257..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |