prot_H-paniculata_contig30682.8309.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig30682.8309.1
Unique Nameprot_H-paniculata_contig30682.8309.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A2Z6M6S6_TRISU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6M6S6_TRISU)

HSP 1 Score: 57.0 bits (136), Expect = 5.910e-8
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            +Y  K+G DGK++++K RLVA G  QI G+ Y    SP   +AS ++ LS AAIQ W L
Sbjct:  737 VYTVKVGPDGKIDRFKARLVAKGYTQIFGLDYSDTFSPVAKMASVRLFLSIAAIQHWSL 795          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A2I0JPZ3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JPZ3_PUNGR)

HSP 1 Score: 56.2 bits (134), Expect = 8.990e-8
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            ++KRKIG DGKVE YK RLVA GNRQ + ++Y+   SP   + S +++L+  A  D+E+
Sbjct:  145 VFKRKIGADGKVETYKARLVAKGNRQRQEVNYKETFSPVAMLKSIRIMLAITAHYDYEV 203          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: UPI0008494023 (uncharacterized mitochondrial protein AtMg00810 n=1 Tax=Theobroma cacao TaxID=3641 RepID=UPI0008494023)

HSP 1 Score: 56.2 bits (134), Expect = 1.080e-7
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            +YK K+  DGKVE+YK RLVA G  QI+G  YQ   SP     + +M  + AA Q+W L
Sbjct:   31 VYKVKLNADGKVERYKARLVAKGYNQIEGFDYQKTFSPVVRQTTVRMFFALAATQNWRL 89          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A061F8M9_THECC (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061F8M9_THECC)

HSP 1 Score: 55.5 bits (132), Expect = 2.050e-7
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            +YK K+  DGKVE+YK RLVA G  QI+G  YQ   SP       +M  + AA Q+W L
Sbjct:  206 VYKVKLNADGKVERYKARLVAKGYNQIEGFDYQETFSPVARQTIVRMFFALAAAQNWRL 264          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A2K3JU66_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JU66_TRIPR)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-6
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 0
Query:    4 YKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQ 57
            Y  K+G DGK++++K RLVA G  QI G+ Y    SP   +AS ++ LS AAIQ
Sbjct:   54 YTVKVGSDGKIDRFKARLVAKGYTQIFGLDYSDTFSPVAKMASVRLFLSIAAIQ 107          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 52.4 bits (124), Expect = 2.540e-6
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            +++ K G DGK++KYK RLVA G  Q++G+ Y    +P    AS +M+L+FAA  D E+
Sbjct: 1013 VFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEV 1071          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 52.0 bits (123), Expect = 3.470e-6
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            I+  K+G DGK+++YK RLVA G  Q  GI Y+   +P   + S ++++S AA  DW+L
Sbjct:  898 IFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKL 956          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A2K3PL93_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PL93_TRIPR)

HSP 1 Score: 50.8 bits (120), Expect = 4.430e-6
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            +Y  KIG DGK++++K RLVA G  QI G+ Y     P   +A  ++++S AAIQ W L
Sbjct:  107 LYTLKIGLDGKIDRFKARLVAEGYTQIFGLDYNDTFLPVAKMAPVRLLVSIAAIQLWPL 165          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: UPI00090552C3 (uncharacterized protein LOC109208296 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI00090552C3)

HSP 1 Score: 49.7 bits (117), Expect = 5.180e-6
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            +YK K   +GKVE++K RLVA G  Q +G+ Y    SP   + + + +++ AA +DW+L
Sbjct:   50 VYKIKYNSNGKVERFKARLVAKGYNQQEGLDYHETFSPVSKMVTVRSVIAIAASKDWKL 108          
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Match: A0A540MBJ7_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MBJ7_MALBA)

HSP 1 Score: 51.2 bits (121), Expect = 5.900e-6
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMILSFAAIQDWEL 61
            +YK K  +DGKV +YK RLVAHG  Q +G+ Y    S      + +++LS AA++ WEL
Sbjct:  185 VYKIKKDQDGKVSRYKARLVAHGYSQEQGLDYDETFSLVVRHTTVRLVLSLAAMKGWEL 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30682.8309.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6M6S6_TRISU5.910e-847.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0JPZ3_PUNGR8.990e-847.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00084940231.080e-747.46uncharacterized mitochondrial protein AtMg00810 n=... [more]
A0A061F8M9_THECC2.050e-747.46Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
A0A2K3JU66_TRIPR1.350e-648.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SSE0_PYCCI2.540e-644.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T5R4_CAJCA3.470e-642.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3PL93_TRIPR4.430e-644.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00090552C35.180e-638.98uncharacterized protein LOC109208296 n=1 Tax=Nicot... [more]
A0A540MBJ7_MALBA5.900e-644.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..59
e-value: 2.0E-9
score: 37.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30682contigH-paniculata_contig30682:472..654 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30682.8309.1mRNA_H-paniculata_contig30682.8309.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig30682 472..798 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig30682.8309.1 ID=prot_H-paniculata_contig30682.8309.1|Name=mRNA_H-paniculata_contig30682.8309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MMIYKRKIGEDGKVEKYKRRLVAHGNRQIKGIHYQVASSPAPAVASTKMI
LSFAAIQDWEL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2